Ss1.1-Spl1-SPL010019D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAGCTTGTCGGTGAGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCTCGGCAGG CGGGTTCAGGCTTCGGGGGCCAGCCGCCGCCATGATCCTGCTGGAGGTGAACAACCGCAT CATCGAGGAGACGCTCGCGCTCAAGTTCGAGAACGCGGCCGCCGGAAATAAACCAGAAGC TGTAGAAGTAACATTTGCAGATTTTGATGGAGTCCTCTATCATATTTCAAATCCTAATGG AGACAAAACGAAAGTAATGGTCAGTATTTCTTTGAAATTCTACAAGGAACTTCAGGCACA TGGTGCTGATGAGTTATTAAAGAGAGTGTACGGGAGCTTCTTGGTTACTCCAGAATCAGG CTATAATGTCTCTTTGCTCTACGACCTTGAAAATCTTCCTGCGTCCAAGGATTCCATCGT GCATCAGGCTGGCATGTTGAAACGAAACTGTTTTGCCTCTGTCTTCGAGAAATACTTCCA ATTCCAAGAAGAGGGCAAGGAAGGAGAGAACAGAGCAGTTATCCATTATAGGGATGATGA GACCATGTATGTTGAGTCTAAAAAGGACAGAGTCACAGTAGTCTTCAGCACAGTGTTTAA GGATGACGACGATGTGGTCATTGGAAAGGTGTTCATGCAGGAGTTCAAAGAAGGCCGCAG AGCCAGCCACACAGCCCCACAGGTCCTTTTTAGCCACAGGGAACCGCCTCTGGAGCTAAA AGACACTGATGCCGCCGTGGGCGACAACATCGGCTACATTACCTTCGTGCTGTTCCCTCG CCACACCAATGCCAGTGCTCGGGACAATACCATCAACCTGATCCACACGTTCCGGGACTA CCTGCACTACCACATCAAGTGCTCGAAGGCCTATATTCACACACGTATGCGGGCAAAAAC ATCTGACTTCCTCAAGGTGCTGAACCGTGCACGCCCAGATGCCGAGAAAAAAGAAATGAA AACAATCACGGGGAAGACGTTTTCATCCCGCTAACTCTTGGGAACGGGAAGAGGAAGCGA CCGGCGGCTGAAGGCTGGAAGACTTGCTACTGGATAATCGTAGCTTTTAATGTTGCACCT CTTCAGGTTCTTAAGGGATTCTCCGTTTTGGTTCCATTTTGTACACGTTTGGAAAATAAT CTGCAAAAACGAGCTGTGCTTGCAAGGACTTCATGGTTCCCAAGAATTAAGAGGAAAAAA AGGAATTCCACTTGATCAACTTAATTCCTTTTCTTTATCTTCCCTCCCTCACTCCCCCTA CCCTCCCCCCTCTTTTCCAAGCTGTTTTGCTTTGCAATATGTTACTGGTAATGAGTTGCA GGTTAATGCAATCTTAACTTGTTTTCTCCTAAGTATTTGAGTTCAAAACTCCTGTATCTA AAGAAATACGGTTGGGGTCATTAATAAAGAAAATCTTTCTATCTTAAAAAAAAAAAAAAA GGGTTTCTAGACTGTGAGTCTGCAAACCTGCACCAGAAAAGCTGAGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAGCTTGTCGGTGAGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCTCGGCAGG CGGGTTCAGGCTTCGGGGGCCAGCCGCCGCCATGATCCTGCTGGAGGTGAACAACCGCAT CATCGAGGAGACGCTCGCGCTCAAGTTCGAGAACGCGGCCGCCGGAAATAAACCAGAAGC TGTAGAAGTAACATTTGCAGATTTTGATGGAGTCCTCTATCATATTTCAAATCCTAATGG AGACAAAACGAAAGTAATGGTCAGTATTTCTTTGAAATTCTACAAGGAACTTCAGGCACA TGGTGCTGATGAGTTATTAAAGAGAGTGTACGGGAGCTTCTTGGTTACTCCAGAATCAGG CTATAATGTCTCTTTGCTCTACGACCTTGAAAATCTTCCTGCGTCCAAGGATTCCATCGT GCATCAGGCTGGCATGTTGAAACGAAACTGTTTTGCCTCTGTCTTCGAGAAATACTTCCA ATTCCAAGAAGAGGGCAAGGAAGGAGAGAACAGAGCAGTTATCCATTATAGGGATGATGA GACCATGTATGTTGAGTCTAAAAAGGACAGAGTCACAGTAGTCTTCAGCACAGTGTTTAA GGATGACGACGATGTGGTCATTGGAAAGGTGTTCATGCAGGAGTTCAAAGAAGGCCGCAG AGCCAGCCACACAGCCCCACAGGTCCTTTTTAGCCACAGGGAACCGCCTCTGGAGCTAAA AGACACTGATGCCGCCGTGGGCGACAACATCGGCTACATTACCTTCGTGCTGTTCCCTCG CCACACCAATGCCAGTGCTCGGGACAATACCATCAACCTGATCCACACGTTCCGGGACTA CCTGCACTACCACATCAAGTGCTCGAAGGCCTATATTCACACACGTATGCGGGCAAAAAC ATCTGACTTCCTCAAGGTGCTGAACCGTGCACGCCCAGATGCCGAGAAAAAAGAAATGAA AACAATCACGGGGAAGACGTTTTCATCCCGCTAACTCTTGGGAACGGGAAGAGGAAGCGA CCGGCGGCTGAAGGCTGGAAGACTTGCTACTGGATAATCGTAGCTTTTAATGTTGCACCT CTTCAGGTTCTTAAGGGATTCTCCGTTTTGGTTCCATTTTGTACACGTTTGGAAAATAAT CTGCAAAAACGAGCTGTGCTTGCAAGGACTTCATGGTTCCCAAGAATTAAGAGGAAAAAA AGGAATTCCACTTGATCAACTTAATTCCTTTTCTTTATCTTCCCTCCCTCACTCCCCCTA CCCTCCCCCCTCTTTTCCAAGCTGTTTTGCTTTGCAATATGTTACTGGTAATGAGTTGCA GGTTAATGCAATCTTAACTTGTTTTCTCCTAAGTATTTGAGTTCAAAACTCCTGTATCTA AAGAAATACGGTTGGGGTCATTAATAAAGAAAATCTTTCTATCTTAAAAAAAAAAAAAAA GGGTTTCTAGACTGTGAGTCTGCAAACCTGCACCAGAAAAGCTGAGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 648-767, - strand, RNAz p=0.984115 | |
| 667-767, - strand, RNAz p=0.588697 | |
| 1286-1405, + strand, RNAz p=0.659016 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 648-767, - strand, RNAz p=0.984115 | |
| 667-767, - strand, RNAz p=0.588697 | |
| 1286-1405, + strand, RNAz p=0.659016 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of U50523, + |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 197-316, gnl|bosTau2|chr2 (64597631-64597750) | |
| 197-316, gnl|canFam2|chr37 (27916280-27916442) | |
| 197-316, gnl|danRer3|chr22 (33518777-33518910) | |
| 197-316, gnl|dasNov1|scaffold_121417 (1818-1939) | |
| 197-316, gnl|echTel1|scaffold_312474 (103338-103176) | |
| 197-316, gnl|fr1|chrUn (36137949-36138119) | |
| 197-316, gnl|galGal2|chr7 (23306369-23306235) | |
| 197-316, gnl|hg17|chr2 (218918927-218919092) | |
| 197-316, gnl|Hg17|chr2 (218918963-218919082) | |
| 197-316, gnl|loxAfr1|scaffold_108861 (4701-4863) | |
| 197-316, gnl|mm7|chr1 (74487769-74487931) | |
| 197-316, gnl|Mm7|chr1 (74487802-74487921) | |
| 197-316, gnl|monDom2|scaffold_39 (2442871-2442707) | |
| 197-316, gnl|oryCun1|scaffold_188521 (31334-31447) | |
| 197-316, gnl|panTro1|chr13 (109076902-109077067) | |
| 197-316, gnl|rheMac2|chr12 (82050146-82050311) | |
| 197-316, gnl|rn3|chr9 (73721900-73722063) | |
| 197-316, gnl|tetNig1|chr3 (2280581-2280714) | |
| 197-316, gnl|xenTro1|scaffold_471 (996037-996185) | |
| 357-548, gnl|bosTau2|chr2 (64604065-64604256) | |
| 357-548, gnl|canFam2|chr37 (27923505-27923718) | |
| 357-548, gnl|danRer3|chr22 (33527117-33527338) | |
| 357-548, gnl|dasNov1|scaffold_31282 (4303-4069) | |
| 357-548, gnl|echTel1|scaffold_149830 (693-893) | |
| 357-548, gnl|fr1|chrUn (36139148-36139348) | |
| 357-548, gnl|galGal2|chr7 (23303527-23303312) | |
| 357-548, gnl|hg17|chr2 (218928868-218929090) | |
| 357-548, gnl|Hg17|chr2 (218928890-218929081) | |
| 357-548, gnl|loxAfr1|scaffold_3475 (86017-85802) | |
| 357-548, gnl|mm7|chr1 (74494484-74494699) | |
| 357-548, gnl|Mm7|chr1 (74494498-74494690) | |
| 357-548, gnl|monDom2|scaffold_39 (2433297-2433087) | |
| 357-548, gnl|oryCun1|scaffold_211393 (55792-56006) | |
| 357-548, gnl|panTro1|chr13 (109086887-109087109) | |
| 357-548, gnl|rheMac2|chr12 (82059995-82060211) | |
| 357-548, gnl|rn3|chr9 (73727738-73727953) | |
| 357-548, gnl|tetNig1|chr3 (2281699-2281903) | |
| 357-548, gnl|xenTro1|scaffold_471 (999406-999627) | |
| 637-767, gnl|bosTau2|chr2 (64610389-64610519) | |
| 637-767, gnl|canFam2|chr37 (27930213-27930362) | |
| 637-767, gnl|danRer3|chr22 (33533036-33533185) | |
| 637-767, gnl|dasNov1|scaffold_121417 (2260-2389) | |
| 637-767, gnl|echTel1|scaffold_244568 (6483-6335) | |
| 637-767, gnl|fr1|chrUn (36139633-36139765) | |
| 637-767, gnl|galGal2|chr7 (23300792-23300647) | |
| 637-767, gnl|hg17|chr2 (218935646-218935795) | |
| 637-767, gnl|Hg17|chr2 (218935645-218935775) | |
| 637-767, gnl|loxAfr1|scaffold_3475 (79014-78866) | |
| 637-767, gnl|mm7|chr1 (74502130-74502260) | |
| 637-767, gnl|Mm7|chr1 (74502129-74502259) | |
| 637-767, gnl|monDom2|scaffold_39 (2417504-2417355) | |
| 637-767, gnl|oryCun1|scaffold_211393 (61947-62079) | |
| 637-767, gnl|panTro1|chr13 (109092040-109092189) | |
| 637-767, gnl|rheMac2|chr12 (82066720-82066869) | |
| 637-767, gnl|rn3|chr9 (73736199-73736332) | |
| 637-767, gnl|tetNig1|chr3 (2282146-2282281) | |
| 637-767, gnl|xenTro1|scaffold_471 (1001725-1001868) | |
| 970-1460, gnl|bosTau2|chr2 (64615131-64615618) | |
| 970-1460, gnl|Hg17|chr2 (218944120-218944611) | |
| 970-1460, gnl|Mm7|chr1 (74507445-74507918) | |
| 1339-1440, gnl|bosTau2|chr16 (30876962-30876862) | |
| 1339-1440, gnl|Hg17|chr2 (218944491-218944574) | |
| 1339-1440, gnl|Mm7|chr1 (74507797-74507883) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 197-316, gnl|bosTau2|chr2 (64597631-64597750) | |
| 197-316, gnl|canFam2|chr37 (27916280-27916442) | |
| 197-316, gnl|danRer3|chr22 (33518777-33518910) | |
| 197-316, gnl|dasNov1|scaffold_121417 (1818-1939) | |
| 197-316, gnl|echTel1|scaffold_312474 (103338-103176) | |
| 197-316, gnl|fr1|chrUn (36137949-36138119) | |
| 197-316, gnl|galGal2|chr7 (23306369-23306235) | |
| 197-316, gnl|hg17|chr2 (218918927-218919092) | |
| 197-316, gnl|Hg17|chr2 (218918963-218919082) | |
| 197-316, gnl|loxAfr1|scaffold_108861 (4701-4863) | |
| 197-316, gnl|mm7|chr1 (74487769-74487931) | |
| 197-316, gnl|Mm7|chr1 (74487802-74487921) | |
| 197-316, gnl|monDom2|scaffold_39 (2442871-2442707) | |
| 197-316, gnl|oryCun1|scaffold_188521 (31334-31447) | |
| 197-316, gnl|panTro1|chr13 (109076902-109077067) | |
| 197-316, gnl|rheMac2|chr12 (82050146-82050311) | |
| 197-316, gnl|rn3|chr9 (73721900-73722063) | |
| 197-316, gnl|tetNig1|chr3 (2280581-2280714) | |
| 197-316, gnl|xenTro1|scaffold_471 (996037-996185) | |
| 357-548, gnl|bosTau2|chr2 (64604065-64604256) | |
| 357-548, gnl|canFam2|chr37 (27923505-27923718) | |
| 357-548, gnl|danRer3|chr22 (33527117-33527338) | |
| 357-548, gnl|dasNov1|scaffold_31282 (4303-4069) | |
| 357-548, gnl|echTel1|scaffold_149830 (693-893) | |
| 357-548, gnl|fr1|chrUn (36139148-36139348) | |
| 357-548, gnl|galGal2|chr7 (23303527-23303312) | |
| 357-548, gnl|hg17|chr2 (218928868-218929090) | |
| 357-548, gnl|Hg17|chr2 (218928890-218929081) | |
| 357-548, gnl|loxAfr1|scaffold_3475 (86017-85802) | |
| 357-548, gnl|mm7|chr1 (74494484-74494699) | |
| 357-548, gnl|Mm7|chr1 (74494498-74494690) | |
| 357-548, gnl|monDom2|scaffold_39 (2433297-2433087) | |
| 357-548, gnl|oryCun1|scaffold_211393 (55792-56006) | |
| 357-548, gnl|panTro1|chr13 (109086887-109087109) | |
| 357-548, gnl|rheMac2|chr12 (82059995-82060211) | |
| 357-548, gnl|rn3|chr9 (73727738-73727953) | |
| 357-548, gnl|tetNig1|chr3 (2281699-2281903) | |
| 357-548, gnl|xenTro1|scaffold_471 (999406-999627) | |
| 637-767, gnl|bosTau2|chr2 (64610389-64610519) | |
| 637-767, gnl|canFam2|chr37 (27930213-27930362) | |
| 637-767, gnl|danRer3|chr22 (33533036-33533185) | |
| 637-767, gnl|dasNov1|scaffold_121417 (2260-2389) | |
| 637-767, gnl|echTel1|scaffold_244568 (6483-6335) | |
| 637-767, gnl|fr1|chrUn (36139633-36139765) | |
| 637-767, gnl|galGal2|chr7 (23300792-23300647) | |
| 637-767, gnl|hg17|chr2 (218935646-218935795) | |
| 637-767, gnl|Hg17|chr2 (218935645-218935775) | |
| 637-767, gnl|loxAfr1|scaffold_3475 (79014-78866) | |
| 637-767, gnl|mm7|chr1 (74502130-74502260) | |
| 637-767, gnl|Mm7|chr1 (74502129-74502259) | |
| 637-767, gnl|monDom2|scaffold_39 (2417504-2417355) | |
| 637-767, gnl|oryCun1|scaffold_211393 (61947-62079) | |
| 637-767, gnl|panTro1|chr13 (109092040-109092189) | |
| 637-767, gnl|rheMac2|chr12 (82066720-82066869) | |
| 637-767, gnl|rn3|chr9 (73736199-73736332) | |
| 637-767, gnl|tetNig1|chr3 (2282146-2282281) | |
| 637-767, gnl|xenTro1|scaffold_471 (1001725-1001868) | |
| 970-1460, gnl|bosTau2|chr2 (64615131-64615618) | |
| 970-1460, gnl|Hg17|chr2 (218944120-218944611) | |
| 970-1460, gnl|Mm7|chr1 (74507445-74507918) | |
| 1339-1440, gnl|bosTau2|chr16 (30876962-30876862) | |
| 1339-1440, gnl|Hg17|chr2 (218944491-218944574) | |
| 1339-1440, gnl|Mm7|chr1 (74507797-74507883) |
| Expressed library(ies): 48 entry(ies) | More info |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
| lnt (1.28077) | |
| csp (1.1283) | |
| ton (1.053) | |
| cbl (0.803582) | |
| med (0.697512) | |
| pla (0.66836) | |
| cag (0.604778) | |
| jej (0.593531) | |
| spl (0.572738) | |
| fty (0.527519) | |
| sin (0.524843) | |
| cly (0.482567) | |
| ctl (0.459207) | |
| jca (0.45584) | |
| amn (0.417711) | |
| fli (0.405762) | |
| col (0.390016) | |
| ebs (0.354904) | |
| duo (0.345602) | |
| ecc (0.345105) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| ski (0.29347) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| thg (0.253582) | |
| pan (0.23596) | |
| cty (0.20816) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| ill (0.175593) | |
| rec (0.17307) | |
| nco (0.161734) | |
| cli (0.152812) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| che (0.136314) | |
| ste (0.135208) | |
| cov (0.132153) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| clu (0.119646) |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (1.28077) | |
| csp (1.1283) | |
| ton (1.053) | |
| cbl (0.803582) | |
| med (0.697512) | |
| pla (0.66836) | |
| cag (0.604778) | |
| jej (0.593531) | |
| spl (0.572738) | |
| fty (0.527519) | |
| sin (0.524843) | |
| cly (0.482567) | |
| ctl (0.459207) | |
| jca (0.45584) | |
| amn (0.417711) | |
| fli (0.405762) | |
| col (0.390016) | |
| ebs (0.354904) | |
| duo (0.345602) | |
| ecc (0.345105) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| ski (0.29347) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| thg (0.253582) | |
| pan (0.23596) | |
| cty (0.20816) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| ill (0.175593) | |
| rec (0.17307) | |
| nco (0.161734) | |
| cli (0.152812) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| che (0.136314) | |
| ste (0.135208) | |
| cov (0.132153) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| clu (0.119646) |