Non-Coding RNA Search

Ss1.1-Spl1-SPL010019F01.5

Sequence:


               
               ATTTATTGGCCAAGAAGTTGGTGCTGCTAAGACCGAGAAGTTAAAAGAACCGGACAGATG
GACAGAGAACCAGAGGGCAGCGTGGGACCTTCTCTTGCCACAGCCTCAGGCCTTGAGGGG
AAGGCTCAGGCCTGGGTTTCTGGACTGCGGAGGGGGGCCCCCAGGTGGGAGGGGCAAGGA
GGCAGCTGGAGTGAGCCACTCACCCCTGGGTGCCCAGCTCAAGCCTCTGCAGTTGCGCCC
TGGGCCTCAACTGAGCAGAGGGATGTGGCAGCTACCGGGGCAGCCCAGGCTTCAGGAGAC
AAAACGAGAGGGGCCGGCAGGTCTGCAGGACCAAAGGGTGCAGCGTTGGGCTGGGCTGGG
CGCAGGCCCAGGGAAATGGGGTGGGGTGGGCTGGGTAAAACCTGGCACCCCCACTGCCCT
GAAGACCACCCCAGTCTACCTCGGTGCTGGCCAGGAAACCTATTGGCTACCTCTCCCACC
ATCCCAGACTATGGGCAGTGGGATGGGGAGGGAGTGGGCCTGGGGCTAGGACCCCCCCTT
TCCAGAATTTCCTCCAGATGGGGCAGTGCCCGAGAAGAGGTTATCTGTCTTCCCTGCCAT
GGAGGGGAACGCCCAGCCCAGGCCCTCGGTCCCTCGGCAGGGAAGGGATCCTCGGGGAGG
AGGGTCCCAGGAGCAGACCCTGCCCTCAGCCCCCACAGACACACCCCAATCTGAAAGCCA
TGCGTGTCCGTGTATATAGGAACCATGTACAGAGCCCGGAGAAGCCCCCCCTACGTCCCC
CGGGGGGAAAAAAAAAGAAAACTAGACAGAAACTCATCTATATATTCTGTATCTGGAGTT
CCGTTTTGAATATTAACTGTGTTATTTTTATACACTTTTTAAGCCTTAACTCGCCATTGA
TTTACCAGTTTAACGTCTCCTGGGGTTTCTTTTCCCACGGGGTTCTCTGCCCCGCCCCTG
CCCCTTTGTTTGACTTGCGTCTGATACTCAGTATTGTAGCTTTTCGTCCGCATGTTACTA
CCCTGTAAATACGCTGTTATACACACTGTTAACATCCCTTTGCTTTTTTCTATGGGACCT
CCAGGCCACCATATTTAGAACTAGTTACCTTATTAAAAAAGAGAAAACAGAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATTGGCCAAGAAGTTGGTGCTGCTAAGACCGAGAAGTTAAAAGAACCGGACAGATG
GACAGAGAACCAGAGGGCAGCGTGGGACCTTCTCTTGCCACAGCCTCAGGCCTTGAGGGG
AAGGCTCAGGCCTGGGTTTCTGGACTGCGGAGGGGGGCCCCCAGGTGGGAGGGGCAAGGA
GGCAGCTGGAGTGAGCCACTCACCCCTGGGTGCCCAGCTCAAGCCTCTGCAGTTGCGCCC
TGGGCCTCAACTGAGCAGAGGGATGTGGCAGCTACCGGGGCAGCCCAGGCTTCAGGAGAC
AAAACGAGAGGGGCCGGCAGGTCTGCAGGACCAAAGGGTGCAGCGTTGGGCTGGGCTGGG
CGCAGGCCCAGGGAAATGGGGTGGGGTGGGCTGGGTAAAACCTGGCACCCCCACTGCCCT
GAAGACCACCCCAGTCTACCTCGGTGCTGGCCAGGAAACCTATTGGCTACCTCTCCCACC
ATCCCAGACTATGGGCAGTGGGATGGGGAGGGAGTGGGCCTGGGGCTAGGACCCCCCCTT
TCCAGAATTTCCTCCAGATGGGGCAGTGCCCGAGAAGAGGTTATCTGTCTTCCCTGCCAT
GGAGGGGAACGCCCAGCCCAGGCCCTCGGTCCCTCGGCAGGGAAGGGATCCTCGGGGAGG
AGGGTCCCAGGAGCAGACCCTGCCCTCAGCCCCCACAGACACACCCCAATCTGAAAGCCA
TGCGTGTCCGTGTATATAGGAACCATGTACAGAGCCCGGAGAAGCCCCCCCTACGTCCCC
CGGGGGGAAAAAAAAAGAAAACTAGACAGAAACTCATCTATATATTCTGTATCTGGAGTT
CCGTTTTGAATATTAACTGTGTTATTTTTATACACTTTTTAAGCCTTAACTCGCCATTGA
TTTACCAGTTTAACGTCTCCTGGGGTTTCTTTTCCCACGGGGTTCTCTGCCCCGCCCCTG
CCCCTTTGTTTGACTTGCGTCTGATACTCAGTATTGTAGCTTTTCGTCCGCATGTTACTA
CCCTGTAAATACGCTGTTATACACACTGTTAACATCCCTTTGCTTTTTTCTATGGGACCT
CCAGGCCACCATATTTAGAACTAGTTACCTTATTAAAAAAGAGAAAACAGAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|21758336|dbj|BAC05287.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|21758336|dbj|BAC05287.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               229-738, + strand, RNAz p=0.999771

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-738, + strand, RNAz p=0.999771

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_152493, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_152493, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1130, gnl|bosTau2|chr2 (71811387-71812519)
               

               
               1-1130, gnl|Hg17|chr1 (33434085-33435189)
               

               
               1-1130, gnl|Mm7|chr4 (128218848-128217735)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1130, gnl|bosTau2|chr2 (71811387-71812519)
               

               
               1-1130, gnl|Hg17|chr1 (33434085-33435189)
               

               
               1-1130, gnl|Mm7|chr4 (128218848-128217735)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	1-1130, gnl\|bosTau2\|chr2 (71811387-71812519)
	1-1130, gnl\|Hg17\|chr1 (33434085-33435189)
	1-1130, gnl\|Mm7\|chr4 (128218848-128217735)

	cbe (0.239234)
	ece (0.229305)
	nlu (0.191681)
	eye (0.170503)
	fhi (0.169578)
	nca (0.136874)
	eru (0.120048)
	ecc (0.115035)