Ss1.1-Spl1-SPL010019F09.5.5
|
CGCCTCACATTGGGATCCTGGACATAGCTCGAGCGGGAAACGGTGAGGAAACTGAGACCC
AGAGAGAGCGAATGAAATGCCCAAGTTCACAAAGGAATGTTGACTACCTGAGAAGGAGGT
TTATTCTGTCCTGTTCGCCATGGTAACCTCAGTATCCAAAACAGTGCCTTCCAGCAAGAT
GGCGGCGTCCAGGGCGTCCCTGCACCAAGTGGCCCGCAACAGTGCTACCAGCAGCATCCG
TGCCCTGAGCAGGGGAGTGGACCCAGAGGGCAGTCAGAGGAAGGGGAGGACACTGCTCCA
GTTCCTGGCTGACCACTTCTGTGACGTGGAGGCTGTCAGGGAGTATCTGCTACGGAAGCA
AGCGTTGAAGGTGCACCGAAAAAACCGGTCCTTCACCTACATCAAGGAGCGATACGGCCC
ATACGTCGCAGGCGCCTATTTCGTCCTGAAGCAGGGAGGTGCAGTCAAGTTTCAGGACAA
TGAGTGGATACAGTCAGGGCGCGGCCTCTCCTCTCTTGAGTTCCGGAAGTTCCGGGAGGT
GCCAGTACAAGCTGTCGATGCCAGTGGCTGTGCCATCAACTACCAAGGCCTGGACAACCT
CTTGGCCCTGAAGGAGCTCCAGTCCCTGTCGCTGCAGCGCTGTCCCCACGTGGACGACTG
GTGCCTCGGCCGCCTCCACCAGCTGGCCGACTCCTTGCAAGAGCTCTCACTGGCCGGTTG
CCCCCGAGTCTCTGAACGAGGCCTAGCCTGCCTCCACCACCTCCAGAACCTCCGCAGGCT
GGATATCTCCGACCTTCCTGCTGTGTCCAGTCCGGACCTCACTCAGATTTTGGTGGAGGA
GATGCTGCCCAACTGTGAGGTTCGGGGGTCTGACTGGGCCCAGGGCCTCAAGTTGGGGCT
GGAGGAGCAGTCCCGAGACCCAGCCAGCAGCCCGGTCCCTGCCTAGCCTCAGCCCCCTCT
CAGCAGGCTGACAGCTACTTGTGGCCTCCACCGACGTTCACTCAGCCGAAGGGTTGGGCT
GGGATGAGGGGCACTGGCAGGTCTATACCCTGGGCTGACGTTCACAGGCTGTCCACACAC
TCCTTTCTCAGTTCCAGGGACCTCCTTCTCCTGCCTCCTCAGGTCTAGGGCTTCTGGCTA
CAAGTAGCTCTCCCTTGTGGTTTCCCCACGCCACGCCCGCCTCTGTGTCAGGCAACTTCT
CTTAACTTGTGAGATTAACCCACCTGAGTGTGCTGCCTTTTCCTGCTAGGTGGTGCTACC
TGCATTGTTTGGGGTTTTTTTTGCTTTTTAGGGCCACACCTGCAGCATATGGAAGTTCCC
AGGGGTCATACCAGAGCTACAGCTGCTGACCTACACCACAGGTTCCCAGCAACGCTGGGT
CCTTAACCCGCTGAGCGGGGCCAGGGATCGAACCTCCAACCTCCTGGTTCCCAGTCAGAT
TCGTTCCCGCTGAGCCATGAGGGGAACTCCGGGAGCTAGCTGCATTTCATAGAGATAGGT
TCTTCACTATGCGGAATGACTCAGCTCCAGGTAGGCTACAGCATCCCTGACCCACACCCA
CCAAATGCTGGGAGCACCTCAAGTCCCACGGTGTCCCCCCACTGCCTCTTAACTGACTTA
CTGACTCACTGACTCAGCCTCAAATTCAGCTTTCTTGTTTGCTCCACTAAAAATTATCGG
AAAATTATCGGGGGAAAAAAAAAAAAAAAGGAGTTCCCGTCGTAGCGCAGTGGTTAACGA
ATCCGACTAGGAACCATGAGGTTGCGGGTTCGGTCCCTGCCCTTGCTCAGTGGGTTAACG
ATCCGGCATTGCCGTGAGCTGTGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCCTCACATTGGGATCCTGGACATAGCTCGAGCGGGAAACGGTGAGGAAACTGAGACCC
AGAGAGAGCGAATGAAATGCCCAAGTTCACAAAGGAATGTTGACTACCTGAGAAGGAGGT
TTATTCTGTCCTGTTCGCCATGGTAACCTCAGTATCCAAAACAGTGCCTTCCAGCAAGAT
GGCGGCGTCCAGGGCGTCCCTGCACCAAGTGGCCCGCAACAGTGCTACCAGCAGCATCCG
TGCCCTGAGCAGGGGAGTGGACCCAGAGGGCAGTCAGAGGAAGGGGAGGACACTGCTCCA
GTTCCTGGCTGACCACTTCTGTGACGTGGAGGCTGTCAGGGAGTATCTGCTACGGAAGCA
AGCGTTGAAGGTGCACCGAAAAAACCGGTCCTTCACCTACATCAAGGAGCGATACGGCCC
ATACGTCGCAGGCGCCTATTTCGTCCTGAAGCAGGGAGGTGCAGTCAAGTTTCAGGACAA
TGAGTGGATACAGTCAGGGCGCGGCCTCTCCTCTCTTGAGTTCCGGAAGTTCCGGGAGGT
GCCAGTACAAGCTGTCGATGCCAGTGGCTGTGCCATCAACTACCAAGGCCTGGACAACCT
CTTGGCCCTGAAGGAGCTCCAGTCCCTGTCGCTGCAGCGCTGTCCCCACGTGGACGACTG
GTGCCTCGGCCGCCTCCACCAGCTGGCCGACTCCTTGCAAGAGCTCTCACTGGCCGGTTG
CCCCCGAGTCTCTGAACGAGGCCTAGCCTGCCTCCACCACCTCCAGAACCTCCGCAGGCT
GGATATCTCCGACCTTCCTGCTGTGTCCAGTCCGGACCTCACTCAGATTTTGGTGGAGGA
GATGCTGCCCAACTGTGAGGTTCGGGGGTCTGACTGGGCCCAGGGCCTCAAGTTGGGGCT
GGAGGAGCAGTCCCGAGACCCAGCCAGCAGCCCGGTCCCTGCCTAGCCTCAGCCCCCTCT
CAGCAGGCTGACAGCTACTTGTGGCCTCCACCGACGTTCACTCAGCCGAAGGGTTGGGCT
GGGATGAGGGGCACTGGCAGGTCTATACCCTGGGCTGACGTTCACAGGCTGTCCACACAC
TCCTTTCTCAGTTCCAGGGACCTCCTTCTCCTGCCTCCTCAGGTCTAGGGCTTCTGGCTA
CAAGTAGCTCTCCCTTGTGGTTTCCCCACGCCACGCCCGCCTCTGTGTCAGGCAACTTCT
CTTAACTTGTGAGATTAACCCACCTGAGTGTGCTGCCTTTTCCTGCTAGGTGGTGCTACC
TGCATTGTTTGGGGTTTTTTTTGCTTTTTAGGGCCACACCTGCAGCATATGGAAGTTCCC
AGGGGTCATACCAGAGCTACAGCTGCTGACCTACACCACAGGTTCCCAGCAACGCTGGGT
CCTTAACCCGCTGAGCGGGGCCAGGGATCGAACCTCCAACCTCCTGGTTCCCAGTCAGAT
TCGTTCCCGCTGAGCCATGAGGGGAACTCCGGGAGCTAGCTGCATTTCATAGAGATAGGT
TCTTCACTATGCGGAATGACTCAGCTCCAGGTAGGCTACAGCATCCCTGACCCACACCCA
CCAAATGCTGGGAGCACCTCAAGTCCCACGGTGTCCCCCCACTGCCTCTTAACTGACTTA
CTGACTCACTGACTCAGCCTCAAATTCAGCTTTCTTGTTTGCTCCACTAAAAATTATCGG
AAAATTATCGGGGGAAAAAAAAAAAAAAAGGAGTTCCCGTCGTAGCGCAGTGGTTAACGA
ATCCGACTAGGAACCATGAGGTTGCGGGTTCGGTCCCTGCCCTTGCTCAGTGGGTTAACG
ATCCGGCATTGCCGTGAGCTGTGG
|
|
gi|61839039|ref|XP_609071.1| |
Protein identifier
|
gi|61839039|ref|XP_609071.1| |
|
196-389, gnl|bosTau2|chr18 (45884133-45883934) |
|
196-389, gnl|Hg17|chr19 (46636160-46635961) |
|
196-389, gnl|Mm7|chr7 (22394651-22394850) |
| |
|
466-602, gnl|bosTau2|chr18 (45881898-45881759) |
|
466-602, gnl|canFam2|chr1 (115480743-115480568) |
|
466-602, gnl|echTel1|scaffold_302065 (4557-4715) |
|
466-602, gnl|hg17|chr19 (46631278-46631455) |
|
466-602, gnl|Hg17|chr19 (46631421-46631282) |
|
466-602, gnl|mm7|chr7 (22397700-22397529) |
|
466-602, gnl|Mm7|chr7 (22397552-22397694) |
|
466-602, gnl|monDom2|scaffold_149 (909681-909856) |
|
466-602, gnl|panTro1|chr20_random (19159201-19159378) |
|
466-602, gnl|rheMac2|chr19 (47830793-47830970) |
|
466-602, gnl|rn3|chr1 (80909941-80909787) |
|
466-602, gnl|xenTro1|scaffold_679 (558813-558993) |
| |
|
603-782, gnl|bosTau2|chr18 (45881654-45881470) |
|
603-782, gnl|Hg17|chr19 (46631179-46630995) |
|
603-782, gnl|Mm7|chr7 (22397783-22397967) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
196-389, gnl|bosTau2|chr18 (45884133-45883934) |
|
196-389, gnl|Hg17|chr19 (46636160-46635961) |
|
196-389, gnl|Mm7|chr7 (22394651-22394850) |
| |
|
466-602, gnl|bosTau2|chr18 (45881898-45881759) |
|
466-602, gnl|canFam2|chr1 (115480743-115480568) |
|
466-602, gnl|echTel1|scaffold_302065 (4557-4715) |
|
466-602, gnl|hg17|chr19 (46631278-46631455) |
|
466-602, gnl|Hg17|chr19 (46631421-46631282) |
|
466-602, gnl|mm7|chr7 (22397700-22397529) |
|
466-602, gnl|Mm7|chr7 (22397552-22397694) |
|
466-602, gnl|monDom2|scaffold_149 (909681-909856) |
|
466-602, gnl|panTro1|chr20_random (19159201-19159378) |
|
466-602, gnl|rheMac2|chr19 (47830793-47830970) |
|
466-602, gnl|rn3|chr1 (80909941-80909787) |
|
466-602, gnl|xenTro1|scaffold_679 (558813-558993) |
| |
|
603-782, gnl|bosTau2|chr18 (45881654-45881470) |
|
603-782, gnl|Hg17|chr19 (46631179-46630995) |
|
603-782, gnl|Mm7|chr7 (22397783-22397967) |
|
mas (0.42061) |
|
ese (0.379507) |
|
ebs (0.354904) |
|
jca (0.34188) |
|
cty (0.31224) |
|
eep (0.245128) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
cov (0.132153) |
|
eru (0.120048) |
|
clu (0.119646) |
|
eje (0.0988338) |
|
mas (0.42061) |
|
ese (0.379507) |
|
ebs (0.354904) |
|
jca (0.34188) |
|
cty (0.31224) |
|
eep (0.245128) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
cov (0.132153) |
|
eru (0.120048) |
|
clu (0.119646) |
|
eje (0.0988338) |
