Ss1.1-Spl1-SPL010019G01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTGCCTCCGGGCGGCCGGGCTCACCCAAGATGGAAGGAGCAGGCAAGAAGGGGCTGGC CGCGCAGCAGCAGGCTGGCATGTCAGAAGGTAAAATCCCAGAGGTGGGGGCCTTGGGAGC AGCTGAGAAGAAAGTGAGGATGCTGGAGCAGCAGCGCACGGAGCTGCTGGAAGTGAACAA GCAATGGGACCAGCACTTCCGGTCCATGAAGCAGCAGTACGAGCAGAAGATCACTGAGCT GCGCCAGAAGCTGGCAGATGCGCAGAAGCAGGTGACTGACCTGGAGGCTGAGCGGGAGCA GAAGCAGCGTGACTTTGACCGCAAACTCCTCCTGGCCAAGTCCAAGATCGAAATGGAGGA GACCGACAAGGAGCAACTGACAGCAGAGGCCAAGGAGCTGCGCCAGAAGGTCAAGTACCT GCAGGATCAGCTGAGCCCGCTCACTCGGCAGCGGGAATACCAGGAAAAAGAGATCCAGAG GCTCAACAAGGCCCTGGAGGAAGCACTGAGCATCCAGGCCTCCCCATCCTCTCCACAGTC AGCCTTTGGAAGCTCAGAAGGTGCCGCAGGCCTGATCAGGAAACAAGAGCTGGTCACGCA GAACGAATTGCTGAAACAGCAGGTGAAGATCTTTGAGGAGGACTTCCAGAGGGAGCGCAG CGACCGCGAGCGCATGAACGAGGAGAAGGAGGAGCTGAAGAAGCAGGTGGAGAAGCTGCA GGCCCAGGTCAACCTGACGTGCGCCCAGCTGAAAGCCTTCAAAGATGAGGAGAAGGCCAG AAATGCCCTCAGACAGCAGAAGAGGAAGGCCAAGAGCTCAGCGGACCGCTACCACGTGGA GTCCCACCCGGAGCACCTCTGCGGGGCCTACCCCTACGCCTACCCGCCTGTGCCCGTCAT GCCGCACCACGGCTTCGAGGACTGGTCCCAGATCCGCTACCCCCCGCCCCCCACGGCCAT GGAGCACGCGCCTCCACTTCCCAGCTCGCGCCTCTTCCATCTGCCGGAATATACCTGGCG GCTGCCCTGCGGAGGGGTGCACAATCAGAGCTCGCAAGTGATGGACTCGCCCGCGGCCAG GCCCGAGGATCCAGAGTCCACCAAAAATGGCCGTGAGAGACCTCAGTGAAACCAGTCATT GGCACCACGCCTGCGTCTTGCAGAGCCAGCTGACTTCAGATCACTGAAAAACTCGAGGCC TCGTGCTCTGTGTGGCCAGAGCCTCGGCCATCCGGGATGCTGAGACGGATGGCCAGCTTG TGCCCCGGAACCAACCTGAACTGTTTGCAGACAGGGGAGGCTCCCTCCAGAAGGTGTCCA CCTGGGCCTCTCCTTTGAGTGACCAGGAAACACTCACTACGGTGCCACCGAGCGGAGAGA CGCATCATCGGCCTTGACCTTCCCTCCTCTGTAGAAGCTGCCGGGGGGTGTCAGTGTCGA GTGGGGTGCCGTCAAGACCCCTTCTTTTCAAAACTTCCCCAGAAGTGGTTCAGCAACCCC TCCGGGGACCACATTCAATTCATGCGTGTGTTTAAATGTTGCTTCGAGCTGTGCCGTAGC GGGGCCTGCCCCACTCCCATCCTTTCCCCCTTGAGGAGCTGCAGGAAGAGCAGGCTTGCG TCTGGGAGCAGGGAGGACAACAGGCTGTCCTGCCGCTGGGCCGTCCACTGCCACCCACGG CAGCCTCGCCAGTGCCACACAGCCTGGGACGAGGGCCATGCCGCCACCTCCGCAGAGGTG CCCCAGCCTGAAGCTGCCAGACCCTCAGCTGGAGGCTTGTGGTGCCAGAGGCCTGGAGTA GGGTGGCTGTCGATCCCCGGGCAGCCGTTTGCACAAATCTTGGACATAAATCCAAGTTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTGCCTCCGGGCGGCCGGGCTCACCCAAGATGGAAGGAGCAGGCAAGAAGGGGCTGGC CGCGCAGCAGCAGGCTGGCATGTCAGAAGGTAAAATCCCAGAGGTGGGGGCCTTGGGAGC AGCTGAGAAGAAAGTGAGGATGCTGGAGCAGCAGCGCACGGAGCTGCTGGAAGTGAACAA GCAATGGGACCAGCACTTCCGGTCCATGAAGCAGCAGTACGAGCAGAAGATCACTGAGCT GCGCCAGAAGCTGGCAGATGCGCAGAAGCAGGTGACTGACCTGGAGGCTGAGCGGGAGCA GAAGCAGCGTGACTTTGACCGCAAACTCCTCCTGGCCAAGTCCAAGATCGAAATGGAGGA GACCGACAAGGAGCAACTGACAGCAGAGGCCAAGGAGCTGCGCCAGAAGGTCAAGTACCT GCAGGATCAGCTGAGCCCGCTCACTCGGCAGCGGGAATACCAGGAAAAAGAGATCCAGAG GCTCAACAAGGCCCTGGAGGAAGCACTGAGCATCCAGGCCTCCCCATCCTCTCCACAGTC AGCCTTTGGAAGCTCAGAAGGTGCCGCAGGCCTGATCAGGAAACAAGAGCTGGTCACGCA GAACGAATTGCTGAAACAGCAGGTGAAGATCTTTGAGGAGGACTTCCAGAGGGAGCGCAG CGACCGCGAGCGCATGAACGAGGAGAAGGAGGAGCTGAAGAAGCAGGTGGAGAAGCTGCA GGCCCAGGTCAACCTGACGTGCGCCCAGCTGAAAGCCTTCAAAGATGAGGAGAAGGCCAG AAATGCCCTCAGACAGCAGAAGAGGAAGGCCAAGAGCTCAGCGGACCGCTACCACGTGGA GTCCCACCCGGAGCACCTCTGCGGGGCCTACCCCTACGCCTACCCGCCTGTGCCCGTCAT GCCGCACCACGGCTTCGAGGACTGGTCCCAGATCCGCTACCCCCCGCCCCCCACGGCCAT GGAGCACGCGCCTCCACTTCCCAGCTCGCGCCTCTTCCATCTGCCGGAATATACCTGGCG GCTGCCCTGCGGAGGGGTGCACAATCAGAGCTCGCAAGTGATGGACTCGCCCGCGGCCAG GCCCGAGGATCCAGAGTCCACCAAAAATGGCCGTGAGAGACCTCAGTGAAACCAGTCATT GGCACCACGCCTGCGTCTTGCAGAGCCAGCTGACTTCAGATCACTGAAAAACTCGAGGCC TCGTGCTCTGTGTGGCCAGAGCCTCGGCCATCCGGGATGCTGAGACGGATGGCCAGCTTG TGCCCCGGAACCAACCTGAACTGTTTGCAGACAGGGGAGGCTCCCTCCAGAAGGTGTCCA CCTGGGCCTCTCCTTTGAGTGACCAGGAAACACTCACTACGGTGCCACCGAGCGGAGAGA CGCATCATCGGCCTTGACCTTCCCTCCTCTGTAGAAGCTGCCGGGGGGTGTCAGTGTCGA GTGGGGTGCCGTCAAGACCCCTTCTTTTCAAAACTTCCCCAGAAGTGGTTCAGCAACCCC TCCGGGGACCACATTCAATTCATGCGTGTGTTTAAATGTTGCTTCGAGCTGTGCCGTAGC GGGGCCTGCCCCACTCCCATCCTTTCCCCCTTGAGGAGCTGCAGGAAGAGCAGGCTTGCG TCTGGGAGCAGGGAGGACAACAGGCTGTCCTGCCGCTGGGCCGTCCACTGCCACCCACGG CAGCCTCGCCAGTGCCACACAGCCTGGGACGAGGGCCATGCCGCCACCTCCGCAGAGGTG CCCCAGCCTGAAGCTGCCAGACCCTCAGCTGGAGGCTTGTGGTGCCAGAGGCCTGGAGTA GGGTGGCTGTCGATCCCCGGGCAGCCGTTTGCACAAATCTTGGACATAAATCCAAGTTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1203-1320, + strand, RNAz p=0.522215 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1203-1320, + strand, RNAz p=0.522215 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_006058, + |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 360-491, gnl|bosTau2|chr7 (42946520-42946389) | |
| 360-491, gnl|canFam2|chr4 (61395231-61395092) | |
| 360-491, gnl|danRer3|chrNA (225559026-225558895) | |
| 360-491, gnl|dasNov1|scaffold_55275 (2893-2754) | |
| 360-491, gnl|fr1|chrUn (109793768-109793636) | |
| 360-491, gnl|galGal2|chr13 (11999701-11999556) | |
| 360-491, gnl|hg17|chr5 (150398838-150398977) | |
| 360-491, gnl|Hg17|chr5 (150398981-150398850) | |
| 360-491, gnl|loxAfr1|scaffold_41103 (4236-4097) | |
| 360-491, gnl|mm7|chr11 (54877505-54877644) | |
| 360-491, gnl|Mm7|chr11 (54877648-54877517) | |
| 360-491, gnl|monDom2|scaffold_6 (55496490-55496351) | |
| 360-491, gnl|panTro1|chr4 (157350934-157351073) | |
| 360-491, gnl|rheMac2|chr6 (147452251-147452390) | |
| 360-491, gnl|rn3|chr10 (40339967-40340106) | |
| 360-491, gnl|tetNig1|chr1 (2495694-2495561) | |
| 621-752, gnl|bosTau2|chr7 (42942560-42942429) | |
| 621-752, gnl|canFam2|chr4 (61398912-61398800) | |
| 621-752, gnl|danRer3|chrNA (225563071-225562972) | |
| 621-752, gnl|dasNov1|scaffold_55275 (6491-6380) | |
| 621-752, gnl|echTel1|scaffold_316288 (114375-114263) | |
| 621-752, gnl|fr1|chrUn (109794202-109794102) | |
| 621-752, gnl|galGal2|chr13 (12000251-12000139) | |
| 621-752, gnl|hg17|chr5 (150395319-150395431) | |
| 621-752, gnl|Hg17|chr5 (150395463-150395332) | |
| 621-752, gnl|loxAfr1|scaffold_41103 (10141-10030) | |
| 621-752, gnl|mm7|chr11 (54874549-54874652) | |
| 621-752, gnl|Mm7|chr11 (54874684-54874553) | |
| 621-752, gnl|monDom2|scaffold_6 (55501993-55501890) | |
| 621-752, gnl|oryCun1|scaffold_206999 (20920-21032) | |
| 621-752, gnl|panTro1|chr4 (157347417-157347529) | |
| 621-752, gnl|rheMac2|chr6 (147448679-147448791) | |
| 621-752, gnl|rn3|chr10 (40337268-40337370) | |
| 621-752, gnl|tetNig1|chr1 (2496127-2496019) | |
| 621-752, gnl|xenTro1|scaffold_261 (667108-667217) | |
| 813-1003, gnl|bosTau2|chr7 (42941187-42940994) | |
| 813-1003, gnl|canFam2|chr4 (61400310-61399995) | |
| 813-1003, gnl|dasNov1|scaffold_55275 (7757-7445) | |
| 813-1003, gnl|echTel1|scaffold_316288 (115523-115243) | |
| 813-1003, gnl|galGal2|chr13 (12000968-12000703) | |
| 813-1003, gnl|hg17|chr5 (150393325-150393621) | |
| 813-1003, gnl|Hg17|chr5 (150393555-150393362) | |
| 813-1003, gnl|loxAfr1|scaffold_41103 (11383-11078) | |
| 813-1003, gnl|mm7|chr11 (54873527-54873809) | |
| 813-1003, gnl|Mm7|chr11 (54873746-54873553) | |
| 813-1003, gnl|monDom2|scaffold_6 (55503960-55503700) | |
| 813-1003, gnl|oryCun1|scaffold_206999 (19674-19981) | |
| 813-1003, gnl|panTro1|chr4 (157345485-157345781) | |
| 813-1003, gnl|rheMac2|chr6 (147446982-147447282) | |
| 813-1003, gnl|rn3|chr10 (40336271-40336552) | |
| 813-1003, gnl|xenTro1|scaffold_110 (790974-790665) | |
| 1093-1442, gnl|bosTau2|chr7 (42938931-42938583) | |
| 1093-1442, gnl|Hg17|chr5 (150390503-150390086) | |
| 1093-1442, gnl|Mm7|chr11 (54868330-54867728) | |
| 1729-1856, gnl|bosTau2|chr7 (42938569-42938443) | |
| 1729-1856, gnl|canFam2|chr4 (61403475-61403301) | |
| 1729-1856, gnl|dasNov1|scaffold_214896 (1226-1036) | |
| 1729-1856, gnl|echTel1|scaffold_316288 (119815-119665) | |
| 1729-1856, gnl|hg17|chr5 (150389677-150389868) | |
| 1729-1856, gnl|Hg17|chr5 (150389862-150389713) | |
| 1729-1856, gnl|loxAfr1|scaffold_41103 (18243-18047) | |
| 1729-1856, gnl|mm7|chr11 (54867518-54867691) | |
| 1729-1856, gnl|Mm7|chr11 (54867685-54867555) | |
| 1729-1856, gnl|oryCun1|scaffold_206999 (16228-16375) | |
| 1729-1856, gnl|panTro1|chr4 (157341597-157341788) | |
| 1729-1856, gnl|rheMac2|chr6 (147443250-147443438) | |
| 1729-1856, gnl|rn3|chr10 (40333337-40333505) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 360-491, gnl|bosTau2|chr7 (42946520-42946389) | |
| 360-491, gnl|canFam2|chr4 (61395231-61395092) | |
| 360-491, gnl|danRer3|chrNA (225559026-225558895) | |
| 360-491, gnl|dasNov1|scaffold_55275 (2893-2754) | |
| 360-491, gnl|fr1|chrUn (109793768-109793636) | |
| 360-491, gnl|galGal2|chr13 (11999701-11999556) | |
| 360-491, gnl|hg17|chr5 (150398838-150398977) | |
| 360-491, gnl|Hg17|chr5 (150398981-150398850) | |
| 360-491, gnl|loxAfr1|scaffold_41103 (4236-4097) | |
| 360-491, gnl|mm7|chr11 (54877505-54877644) | |
| 360-491, gnl|Mm7|chr11 (54877648-54877517) | |
| 360-491, gnl|monDom2|scaffold_6 (55496490-55496351) | |
| 360-491, gnl|panTro1|chr4 (157350934-157351073) | |
| 360-491, gnl|rheMac2|chr6 (147452251-147452390) | |
| 360-491, gnl|rn3|chr10 (40339967-40340106) | |
| 360-491, gnl|tetNig1|chr1 (2495694-2495561) | |
| 621-752, gnl|bosTau2|chr7 (42942560-42942429) | |
| 621-752, gnl|canFam2|chr4 (61398912-61398800) | |
| 621-752, gnl|danRer3|chrNA (225563071-225562972) | |
| 621-752, gnl|dasNov1|scaffold_55275 (6491-6380) | |
| 621-752, gnl|echTel1|scaffold_316288 (114375-114263) | |
| 621-752, gnl|fr1|chrUn (109794202-109794102) | |
| 621-752, gnl|galGal2|chr13 (12000251-12000139) | |
| 621-752, gnl|hg17|chr5 (150395319-150395431) | |
| 621-752, gnl|Hg17|chr5 (150395463-150395332) | |
| 621-752, gnl|loxAfr1|scaffold_41103 (10141-10030) | |
| 621-752, gnl|mm7|chr11 (54874549-54874652) | |
| 621-752, gnl|Mm7|chr11 (54874684-54874553) | |
| 621-752, gnl|monDom2|scaffold_6 (55501993-55501890) | |
| 621-752, gnl|oryCun1|scaffold_206999 (20920-21032) | |
| 621-752, gnl|panTro1|chr4 (157347417-157347529) | |
| 621-752, gnl|rheMac2|chr6 (147448679-147448791) | |
| 621-752, gnl|rn3|chr10 (40337268-40337370) | |
| 621-752, gnl|tetNig1|chr1 (2496127-2496019) | |
| 621-752, gnl|xenTro1|scaffold_261 (667108-667217) | |
| 813-1003, gnl|bosTau2|chr7 (42941187-42940994) | |
| 813-1003, gnl|canFam2|chr4 (61400310-61399995) | |
| 813-1003, gnl|dasNov1|scaffold_55275 (7757-7445) | |
| 813-1003, gnl|echTel1|scaffold_316288 (115523-115243) | |
| 813-1003, gnl|galGal2|chr13 (12000968-12000703) | |
| 813-1003, gnl|hg17|chr5 (150393325-150393621) | |
| 813-1003, gnl|Hg17|chr5 (150393555-150393362) | |
| 813-1003, gnl|loxAfr1|scaffold_41103 (11383-11078) | |
| 813-1003, gnl|mm7|chr11 (54873527-54873809) | |
| 813-1003, gnl|Mm7|chr11 (54873746-54873553) | |
| 813-1003, gnl|monDom2|scaffold_6 (55503960-55503700) | |
| 813-1003, gnl|oryCun1|scaffold_206999 (19674-19981) | |
| 813-1003, gnl|panTro1|chr4 (157345485-157345781) | |
| 813-1003, gnl|rheMac2|chr6 (147446982-147447282) | |
| 813-1003, gnl|rn3|chr10 (40336271-40336552) | |
| 813-1003, gnl|xenTro1|scaffold_110 (790974-790665) | |
| 1093-1442, gnl|bosTau2|chr7 (42938931-42938583) | |
| 1093-1442, gnl|Hg17|chr5 (150390503-150390086) | |
| 1093-1442, gnl|Mm7|chr11 (54868330-54867728) | |
| 1729-1856, gnl|bosTau2|chr7 (42938569-42938443) | |
| 1729-1856, gnl|canFam2|chr4 (61403475-61403301) | |
| 1729-1856, gnl|dasNov1|scaffold_214896 (1226-1036) | |
| 1729-1856, gnl|echTel1|scaffold_316288 (119815-119665) | |
| 1729-1856, gnl|hg17|chr5 (150389677-150389868) | |
| 1729-1856, gnl|Hg17|chr5 (150389862-150389713) | |
| 1729-1856, gnl|loxAfr1|scaffold_41103 (18243-18047) | |
| 1729-1856, gnl|mm7|chr11 (54867518-54867691) | |
| 1729-1856, gnl|Mm7|chr11 (54867685-54867555) | |
| 1729-1856, gnl|oryCun1|scaffold_206999 (16228-16375) | |
| 1729-1856, gnl|panTro1|chr4 (157341597-157341788) | |
| 1729-1856, gnl|rheMac2|chr6 (147443250-147443438) | |
| 1729-1856, gnl|rn3|chr10 (40333337-40333505) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| amn (0.417711) | |
| cly (0.361925) | |
| csp (0.322373) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| clu (0.119646) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| cly (0.361925) | |
| csp (0.322373) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| clu (0.119646) | |
| cty (0.10408) | |
| ldo (0.0970026) |