Non-Coding RNA Search

Ss1.1-Spl1-SPL010020E03.5

Sequence:


               
               GTACCAGTACTCGTCCAGACACCAGAGCCCCACGCAGAACACCTGGAACACAAAGAAGGG
TGCTGTGGCTCTCTCCTTGAACAGCTCTGAGAAGTCAGGCACCACCATCTCAGCCTTGTT
GCTCCCAAATTTCTTCTCGGCTGCTCGGATCTCCGAGTCCTCTTGGAACCCTCTGTTGCT
CTGGTAGTATGAGAAGGCGTTTCCCACAGGAAAGGCCACAGGGAGGAAACGCTTCTTTTC
CAGGGCATCATAAGAATACTTGATCTTCTGGAATTCAAAGGATAGCACCTCTTGTCCATC
TTCACCCTCATCTCGGTGGAGGGCCACGAGCTCAGTGGAGCCATTGTTGGGGGTTGGCAC
CACCTTCACGAAGGTCGCTTTGCTGGGGTCGTACTCCGGGGTGCAGGTGAGCGCGCAGTG
CGCGTGCACGGACCAATGCCCCGAGAGGACGGTGAGCGCGTGCGCGAGGCAGATGGTGGC
GAGCACAAGCAGCGCGGCCTCGGGGATCTGCGCCCAGCTGCTGCCCCAGCCCCAGCAGCC
GGCGGCCGCGGCGCCCAGCCAGGCTGGGTAGAGCAGTCCCGCGAATGGTAGCACCGTGAG
GCGCCGCAGCAGCGCGAGCCGCCGGTACGGCCATACGGCGGCTACCAGCTCGTCGCCGCT
CGCTATGAGCGCCGGCCCGGCGGCAAGGACAGTGCGCGGCTGCGGCTTGGGCTTGGGCTG
CCCAGCGGGCCGGGCCCCGCAATGCCGAGCCCCGCAAGGCACCGCATTGCCCACCGCCGC
CGCCATCTTTCCCAGCGCCGCGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACCAGTACTCGTCCAGACACCAGAGCCCCACGCAGAACACCTGGAACACAAAGAAGGG
TGCTGTGGCTCTCTCCTTGAACAGCTCTGAGAAGTCAGGCACCACCATCTCAGCCTTGTT
GCTCCCAAATTTCTTCTCGGCTGCTCGGATCTCCGAGTCCTCTTGGAACCCTCTGTTGCT
CTGGTAGTATGAGAAGGCGTTTCCCACAGGAAAGGCCACAGGGAGGAAACGCTTCTTTTC
CAGGGCATCATAAGAATACTTGATCTTCTGGAATTCAAAGGATAGCACCTCTTGTCCATC
TTCACCCTCATCTCGGTGGAGGGCCACGAGCTCAGTGGAGCCATTGTTGGGGGTTGGCAC
CACCTTCACGAAGGTCGCTTTGCTGGGGTCGTACTCCGGGGTGCAGGTGAGCGCGCAGTG
CGCGTGCACGGACCAATGCCCCGAGAGGACGGTGAGCGCGTGCGCGAGGCAGATGGTGGC
GAGCACAAGCAGCGCGGCCTCGGGGATCTGCGCCCAGCTGCTGCCCCAGCCCCAGCAGCC
GGCGGCCGCGGCGCCCAGCCAGGCTGGGTAGAGCAGTCCCGCGAATGGTAGCACCGTGAG
GCGCCGCAGCAGCGCGAGCCGCCGGTACGGCCATACGGCGGCTACCAGCTCGTCGCCGCT
CGCTATGAGCGCCGGCCCGGCGGCAAGGACAGTGCGCGGCTGCGGCTTGGGCTTGGGCTG
CCCAGCGGGCCGGGCCCCGCAATGCCGAGCCCCGCAAGGCACCGCATTGCCCACCGCCGC
CGCCATCTTTCCCAGCGCCGCGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55650177|ref|XP_512973.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55650177|ref|XP_512973.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               115-308, + strand, RNAz p=0.921936
               

               
               555-714, - strand, RNAz p=0.836787

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-308, + strand, RNAz p=0.921936
               

               
               555-714, - strand, RNAz p=0.836787

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK056420, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK056420, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               115-308, gnl|bosTau2|chr7 (3820565-3820372)
               

               
               115-308, gnl|Hg17|chr19 (19631409-19631602)
               

               
               115-308, gnl|Mm7|chr8 (68248730-68248537)
               


               
               396-804, gnl|bosTau2|chr7 (3818062-3817663)
               

               
               396-804, gnl|Hg17|chr19 (19635079-19635493)
               

               
               396-804, gnl|Mm7|chr8 (68246251-68245846)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-308, gnl|bosTau2|chr7 (3820565-3820372)
               

               
               115-308, gnl|Hg17|chr19 (19631409-19631602)
               

               
               115-308, gnl|Mm7|chr8 (68248730-68248537)
               


               
               396-804, gnl|bosTau2|chr7 (3818062-3817663)
               

               
               396-804, gnl|Hg17|chr19 (19635079-19635493)
               

               
               396-804, gnl|Mm7|chr8 (68246251-68245846)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	115-308, + strand, RNAz p=0.921936
	555-714, - strand, RNAz p=0.836787

	115-308, gnl\|bosTau2\|chr7 (3820565-3820372)
	115-308, gnl\|Hg17\|chr19 (19631409-19631602)
	115-308, gnl\|Mm7\|chr8 (68248730-68248537)

	396-804, gnl\|bosTau2\|chr7 (3818062-3817663)
	396-804, gnl\|Hg17\|chr19 (19635079-19635493)
	396-804, gnl\|Mm7\|chr8 (68246251-68245846)