Non-Coding RNA Search

Ss1.1-Spl1-SPL010020H10.5

Sequence:


               
               GCAGGGGAGGGTCTCCCTTTGCTATTGTTATCACCCAGCAACACCAGATTCACCGCTCCT
GTACAGTCAACATCATGTTTGGAACCCCACAAGAGCATCGCAACATGCCCCAGGCAGACG
CCATGGTACTGGTGGCCAGAAATTATGAGCGCTACAAGAACGAGTGCCGGGAGAAGGAGC
GTGAGGAGATTGCCAGACAGGCCGCCAAGATGGCGGACGAAGCCATCCTCCAGGAAAGAG
AGCGAGGAGGCCCTGACGAAGGCATGCGCGGGGGGCACCCTCCAGCCATCCAAAGCCTCA
TCAACCTGCTGGCAGACAATAGGTACCTCACTGCCGAAGAGACTGACAAGATCATCAACT
ACCTGCGAGAGCGGAAGGAGCGGCTTATGAGGAGCAGCACCGACTCTCTGCCTGGCCCGA
TTTCCCGTCAACCACTCGGGGCGTCCTCGGGTGCCTCGCTGAAGACGCAGCCAAGCTCCC
AACCGCTCCAGAGCGGTCAAGTGCTCCCCTCCGCTACACCCACTCCAGCTGCAGCCCCCA
CCTCCCAGCAAGAGCTTCAGGCCAAAATCCTCAGCCTCTTCAATAGTGGCACAGTTGCGG
CCAATAGCAGCTCTGCATCACCCTCAGTTGCTGCCGGAAACACCCAGAACCAGAATTTCT
CCACAGCAGCCAACAGCCAGCCTCAGCAAAGATCACAGGCCTCTGGCAATCAGCCTCCAA
ACATTTTGGGACAGGCAGGATCTGCTCGGAACATGGGCCCCAGGCCTGGGGCTCCGTCCC
AAGGGCTCTTTGGCCAGCCTTCCACGCGCCTGGCACCCGCCAGCAACTTGGCTAGCCAGA
GGCCTGTGTCTTCCACCGCTATCAACTTTGACAATCCAAGTGTACAGAAGGCTCTGGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGGGAGGGTCTCCCTTTGCTATTGTTATCACCCAGCAACACCAGATTCACCGCTCCT
GTACAGTCAACATCATGTTTGGAACCCCACAAGAGCATCGCAACATGCCCCAGGCAGACG
CCATGGTACTGGTGGCCAGAAATTATGAGCGCTACAAGAACGAGTGCCGGGAGAAGGAGC
GTGAGGAGATTGCCAGACAGGCCGCCAAGATGGCGGACGAAGCCATCCTCCAGGAAAGAG
AGCGAGGAGGCCCTGACGAAGGCATGCGCGGGGGGCACCCTCCAGCCATCCAAAGCCTCA
TCAACCTGCTGGCAGACAATAGGTACCTCACTGCCGAAGAGACTGACAAGATCATCAACT
ACCTGCGAGAGCGGAAGGAGCGGCTTATGAGGAGCAGCACCGACTCTCTGCCTGGCCCGA
TTTCCCGTCAACCACTCGGGGCGTCCTCGGGTGCCTCGCTGAAGACGCAGCCAAGCTCCC
AACCGCTCCAGAGCGGTCAAGTGCTCCCCTCCGCTACACCCACTCCAGCTGCAGCCCCCA
CCTCCCAGCAAGAGCTTCAGGCCAAAATCCTCAGCCTCTTCAATAGTGGCACAGTTGCGG
CCAATAGCAGCTCTGCATCACCCTCAGTTGCTGCCGGAAACACCCAGAACCAGAATTTCT
CCACAGCAGCCAACAGCCAGCCTCAGCAAAGATCACAGGCCTCTGGCAATCAGCCTCCAA
ACATTTTGGGACAGGCAGGATCTGCTCGGAACATGGGCCCCAGGCCTGGGGCTCCGTCCC
AAGGGCTCTTTGGCCAGCCTTCCACGCGCCTGGCACCCGCCAGCAACTTGGCTAGCCAGA
GGCCTGTGTCTTCCACCGCTATCAACTTTGACAATCCAAGTGTACAGAAGGCTCTGGACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26339936|dbj|BAC33631.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26339936|dbj|BAC33631.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               444-603, - strand, RNAz p=0.866987
               

               
               684-900, - strand, RNAz p=0.979394

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               444-603, - strand, RNAz p=0.866987
               

               
               684-900, - strand, RNAz p=0.979394

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               404-900, gnl|bosTau2|chr13 (54832195-54831699)
               

               
               404-900, gnl|Hg17|chr20 (44124946-44124450)
               

               
               404-900, gnl|Mm7|chr2 (164742836-164742340)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               404-900, gnl|bosTau2|chr13 (54832195-54831699)
               

               
               404-900, gnl|Hg17|chr20 (44124946-44124450)
               

               
               404-900, gnl|Mm7|chr2 (164742836-164742340)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.20816)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               pla (0.133672)

	444-603, - strand, RNAz p=0.866987
	684-900, - strand, RNAz p=0.979394

	404-900, gnl\|bosTau2\|chr13 (54832195-54831699)
	404-900, gnl\|Hg17\|chr20 (44124946-44124450)
	404-900, gnl\|Mm7\|chr2 (164742836-164742340)