Non-Coding RNA Search

Ss1.1-Spl1-SPL010021E04.5

Sequence:


               
               CAAAGCCCCCCCACTCCCCACCGCCCCGTTCCCCATGGCGCCTGGTCCGGACTCATTTTT
CATTTTCCCAACGGGAAGGCAGCTGTATGAATTTGGCTTTTAAGATCATCTTCCCACCAA
CTCTCCGTCTGCTCAGCCGGAAAAAACTGTGCCTGTTCCAAGAACAACATCACTGGCCTG
ACAAAAGACAGTTCAGCCAGTGGTCAGAAACAGGTCTGCGCAGACACCACCTCCTCCAGA
GAAGAAAGCCTGTTCTGTCATTCCAGGAAAGCAGTCTCAGACCACGTGCTACCTGCCTTG
TTTTCTTGCCAGGGTCGCATGTGGGACTCTGTGGTGGCCCCTGTGAGATGGCAGAGCAAC
GGTTCTGTGTGGACTATGCCAAGTGTGGCACAGCCGGCTGCAAAAAATGCAAGGAAAAGA
TTGTAAAGGGTGTATGTCGCATTGGCAAAGTGGTGCCCAATCCCTTCTCAGAGTCGGGGG
GTGATATGAAAGAGTGGTACCACATCAAATGCATGTTTGAGAAACTGGAGCGGGCCCGAG
CCACCACGAAAAAAATCGAGGACCTCACAGAGCTGGAAGGTTGGGAAGAGCTGGAAGATC
CTGAGAAAGAACAGATAAGCCAGCACATTGCAGATCTGTCTTCCAAGGCAGCAAGCACAC
CAAAGAAGAAAGCTGTTGTCCAGGCTAAGTTGACAGCCACTGGCCAGGTGACATCTCCAG
TGAAAGGTGCTTCATTTGTCACCAATACCAATCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGCCCCCCCACTCCCCACCGCCCCGTTCCCCATGGCGCCTGGTCCGGACTCATTTTT
CATTTTCCCAACGGGAAGGCAGCTGTATGAATTTGGCTTTTAAGATCATCTTCCCACCAA
CTCTCCGTCTGCTCAGCCGGAAAAAACTGTGCCTGTTCCAAGAACAACATCACTGGCCTG
ACAAAAGACAGTTCAGCCAGTGGTCAGAAACAGGTCTGCGCAGACACCACCTCCTCCAGA
GAAGAAAGCCTGTTCTGTCATTCCAGGAAAGCAGTCTCAGACCACGTGCTACCTGCCTTG
TTTTCTTGCCAGGGTCGCATGTGGGACTCTGTGGTGGCCCCTGTGAGATGGCAGAGCAAC
GGTTCTGTGTGGACTATGCCAAGTGTGGCACAGCCGGCTGCAAAAAATGCAAGGAAAAGA
TTGTAAAGGGTGTATGTCGCATTGGCAAAGTGGTGCCCAATCCCTTCTCAGAGTCGGGGG
GTGATATGAAAGAGTGGTACCACATCAAATGCATGTTTGAGAAACTGGAGCGGGCCCGAG
CCACCACGAAAAAAATCGAGGACCTCACAGAGCTGGAAGGTTGGGAAGAGCTGGAAGATC
CTGAGAAAGAACAGATAAGCCAGCACATTGCAGATCTGTCTTCCAAGGCAGCAAGCACAC
CAAAGAAGAAAGCTGTTGTCCAGGCTAAGTTGACAGCCACTGGCCAGGTGACATCTCCAG
TGAAAGGTGCTTCATTTGTCACCAATACCAATCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96DF0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96DF0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               355-554, + strand, RNAz p=0.95459

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               355-554, + strand, RNAz p=0.95459

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               79-633, gnl|bosTau2|chr19 (8881264-8881815)
               

               
               79-633, gnl|Hg17|chr17 (30334130-30334684)
               

               
               79-633, gnl|Mm7|chr11 (82864917-82865474)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-633, gnl|bosTau2|chr19 (8881264-8881815)
               

               
               79-633, gnl|Hg17|chr17 (30334130-30334684)
               

               
               79-633, gnl|Mm7|chr11 (82864917-82865474)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               cje (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               cje (0.165235)

	79-633, gnl\|bosTau2\|chr19 (8881264-8881815)
	79-633, gnl\|Hg17\|chr17 (30334130-30334684)
	79-633, gnl\|Mm7\|chr11 (82864917-82865474)