Ss1.1-Spl1-SPL010021F09.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCATATTCTTTTGACCTCAACAAATATGATGCTTATTCAGATGAAGAGCAGGAGCTCAG CTTGAGAGGACCCCTAGGCCCCAAGTGGGCCCCAGATGACATCTGGTTCCTGCCTTCTCC TTAGCCTGGCTGTGAGGAAGGGGCTCTGGCATCCAAGGGAGCCCCAGCTGCCTGCAGCCT CAGTGTGCCCGGGCCTTTTCCTCCAGGGGAGATGGAGCCACATCCCAGAGAAAGATGAAT GCTCTTGCACAATGTCCCAGTGGGGTGGGGGTATCAGAGGTGGTGCTCCTGGGTGTCTGC CTTCTCCGTGAGTGGGTCCTGCTCCACAGCTCTGTGGGAACCCCACAGGGCCTCTCAGCC TTGTCCTCCTCCCAGGGGAAGCAGGCCCTGAGGCAGGACCTCACTGACTCCTTCACTTCC GCCTCCAGACCCTTCATCCTGTCCTCGTACTCTGCCAGCAACTCCTGCTGGAACTGCTTT TCCATATCTCGGATCTGTTCCAGGCAGGCTGCCTGCTTCTCTTCTAGCTTCTCCTGATGC CTCTCCAGATTCTCTGTCATCTGCTTGATGACCTGCACCACCTCCTGGATGTGGGAGTTG TTGATCTCTCTTTTCAACCTCTCCTGAGCCATTTTGTCTGTAGTGACCTTGATCATGGCC TGGATCCTCTCTAGCCTTTTGGCCTCCAGCTTTTTCTTCATCTCTTTGGTGTCAGTCTCC AGGGTCTCCTTGAGGGTCTTCAGCTCTGCAGCCTGTTTCTCTCTGGCCAGCTCCATCATC TTGGTCATTTGCTCGGCCACGTGCTGCTCCTTGCGCTTCAGGACGCACTCGCACTGCTCC TCTCCTTGCTGTAGCAGCTCCTGCTCCAGCCTCTCTCTCAGCTCTCTCAGGCGCGCGTCC GCGCCCTCCGGGCCCTCAGCCGGCTCCAACCCGGCGGTGTCCTCGCCCGGCAGGGTCCTT TTCTTGCGGGAGCCCTTGCCCGGAACGACTTTGCGGCCACGGCACCCGCCGCCGCCCCCC GCACCTGGCGGCGCGAGCTCGGCCAGCTGTGCCGCGCCCCGCTGCAGCAGCTCCTCCCAG CGCCGCGCGCCGCGCCGCTCCAGCTCCCGAAGCTCCTTCTCGTGCCGCCGCTGCAGCTTC ACGACGCCCTTCAGCTCCTGCAGCTCCTCCAGGCTGGCGGTCCGCGGCTCCGCAGCTTCT TTGGTGACCTCTTCGCTGGCCTTGGCCCCAGCTGCTGCTGACCCGTTGCTCGTTGGGGCC AATGCCCCATTGACCTGGCGGGCAACCGGACTCCCGAGAGGGAAGGGATTCTCAGGTAGA CCTCACATGGCTTCCTTGAGTTTCACAGCCTTCTTATCATGGGCATTGAAGAACTTGATG GGATTGGCGAGGGCCACCGTGAGATCTGCCCAGGTGTCAGGTACACAGTCCTTCATCTCC AGGAAGACAAAGAGTGCAGGCATGGTGAGGGGCATGTTGCTTTCGCTGTGCAGGCACATG TGGTGGTATCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCATATTCTTTTGACCTCAACAAATATGATGCTTATTCAGATGAAGAGCAGGAGCTCAG CTTGAGAGGACCCCTAGGCCCCAAGTGGGCCCCAGATGACATCTGGTTCCTGCCTTCTCC TTAGCCTGGCTGTGAGGAAGGGGCTCTGGCATCCAAGGGAGCCCCAGCTGCCTGCAGCCT CAGTGTGCCCGGGCCTTTTCCTCCAGGGGAGATGGAGCCACATCCCAGAGAAAGATGAAT GCTCTTGCACAATGTCCCAGTGGGGTGGGGGTATCAGAGGTGGTGCTCCTGGGTGTCTGC CTTCTCCGTGAGTGGGTCCTGCTCCACAGCTCTGTGGGAACCCCACAGGGCCTCTCAGCC TTGTCCTCCTCCCAGGGGAAGCAGGCCCTGAGGCAGGACCTCACTGACTCCTTCACTTCC GCCTCCAGACCCTTCATCCTGTCCTCGTACTCTGCCAGCAACTCCTGCTGGAACTGCTTT TCCATATCTCGGATCTGTTCCAGGCAGGCTGCCTGCTTCTCTTCTAGCTTCTCCTGATGC CTCTCCAGATTCTCTGTCATCTGCTTGATGACCTGCACCACCTCCTGGATGTGGGAGTTG TTGATCTCTCTTTTCAACCTCTCCTGAGCCATTTTGTCTGTAGTGACCTTGATCATGGCC TGGATCCTCTCTAGCCTTTTGGCCTCCAGCTTTTTCTTCATCTCTTTGGTGTCAGTCTCC AGGGTCTCCTTGAGGGTCTTCAGCTCTGCAGCCTGTTTCTCTCTGGCCAGCTCCATCATC TTGGTCATTTGCTCGGCCACGTGCTGCTCCTTGCGCTTCAGGACGCACTCGCACTGCTCC TCTCCTTGCTGTAGCAGCTCCTGCTCCAGCCTCTCTCTCAGCTCTCTCAGGCGCGCGTCC GCGCCCTCCGGGCCCTCAGCCGGCTCCAACCCGGCGGTGTCCTCGCCCGGCAGGGTCCTT TTCTTGCGGGAGCCCTTGCCCGGAACGACTTTGCGGCCACGGCACCCGCCGCCGCCCCCC GCACCTGGCGGCGCGAGCTCGGCCAGCTGTGCCGCGCCCCGCTGCAGCAGCTCCTCCCAG CGCCGCGCGCCGCGCCGCTCCAGCTCCCGAAGCTCCTTCTCGTGCCGCCGCTGCAGCTTC ACGACGCCCTTCAGCTCCTGCAGCTCCTCCAGGCTGGCGGTCCGCGGCTCCGCAGCTTCT TTGGTGACCTCTTCGCTGGCCTTGGCCCCAGCTGCTGCTGACCCGTTGCTCGTTGGGGCC AATGCCCCATTGACCTGGCGGGCAACCGGACTCCCGAGAGGGAAGGGATTCTCAGGTAGA CCTCACATGGCTTCCTTGAGTTTCACAGCCTTCTTATCATGGGCATTGAAGAACTTGATG GGATTGGCGAGGGCCACCGTGAGATCTGCCCAGGTGTCAGGTACACAGTCCTTCATCTCC AGGAAGACAAAGAGTGCAGGCATGGTGAGGGGCATGTTGCTTTCGCTGTGCAGGCACATG TGGTGGTATCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 115-1511, - strand, RNAz p=0.888525 | |
| 309-424, + strand, RNAz p=0.929368 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 115-1511, - strand, RNAz p=0.888525 | |
| 309-424, + strand, RNAz p=0.929368 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_004573, - |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 41-476, gnl|bosTau2|chr10 (23677778-23678209) | |
| 41-476, gnl|Hg17|chr15 (38367971-38368414) | |
| 41-476, gnl|Mm7|chr2 (118449672-118450054) | |
| 957-1190, gnl|bosTau2|chr10 (23680155-23680388) | |
| 957-1190, gnl|Hg17|chr15 (38370757-38370981) | |
| 957-1190, gnl|Mm7|chr2 (118452184-118452396) | |
| 1406-1511, gnl|bosTau2|chr10 (23681269-23681374) | |
| 1406-1511, gnl|canFam2|chr30 (10466049-10466167) | |
| 1406-1511, gnl|danRer3|chr7 (45007882-45007766) | |
| 1406-1511, gnl|dasNov1|scaffold_213499 (3730-3612) | |
| 1406-1511, gnl|echTel1|scaffold_293676 (3881-3763) | |
| 1406-1511, gnl|fr1|chrUn (59964187-59964069) | |
| 1406-1511, gnl|galGal2|chr5 (2792222-2792106) | |
| 1406-1511, gnl|hg17|chr15 (38371831-38371949) | |
| 1406-1511, gnl|Hg17|chr15 (38371832-38371937) | |
| 1406-1511, gnl|loxAfr1|scaffold_5149 (77955-78073) | |
| 1406-1511, gnl|mm7|chr2 (118453215-118453333) | |
| 1406-1511, gnl|Mm7|chr2 (118453216-118453321) | |
| 1406-1511, gnl|monDom2|scaffold_12 (2160507-2160393) | |
| 1406-1511, gnl|panTro1|chr16 (38254538-38254656) | |
| 1406-1511, gnl|rheMac2|chr7 (18626368-18626486) | |
| 1406-1511, gnl|rn3|chr3 (105104232-105104350) | |
| 1406-1511, gnl|tetNig1|chr14 (7382910-7383028) | |
| 1406-1511, gnl|xenTro1|scaffold_1383 (16811-16929) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 41-476, gnl|bosTau2|chr10 (23677778-23678209) | |
| 41-476, gnl|Hg17|chr15 (38367971-38368414) | |
| 41-476, gnl|Mm7|chr2 (118449672-118450054) | |
| 957-1190, gnl|bosTau2|chr10 (23680155-23680388) | |
| 957-1190, gnl|Hg17|chr15 (38370757-38370981) | |
| 957-1190, gnl|Mm7|chr2 (118452184-118452396) | |
| 1406-1511, gnl|bosTau2|chr10 (23681269-23681374) | |
| 1406-1511, gnl|canFam2|chr30 (10466049-10466167) | |
| 1406-1511, gnl|danRer3|chr7 (45007882-45007766) | |
| 1406-1511, gnl|dasNov1|scaffold_213499 (3730-3612) | |
| 1406-1511, gnl|echTel1|scaffold_293676 (3881-3763) | |
| 1406-1511, gnl|fr1|chrUn (59964187-59964069) | |
| 1406-1511, gnl|galGal2|chr5 (2792222-2792106) | |
| 1406-1511, gnl|hg17|chr15 (38371831-38371949) | |
| 1406-1511, gnl|Hg17|chr15 (38371832-38371937) | |
| 1406-1511, gnl|loxAfr1|scaffold_5149 (77955-78073) | |
| 1406-1511, gnl|mm7|chr2 (118453215-118453333) | |
| 1406-1511, gnl|Mm7|chr2 (118453216-118453321) | |
| 1406-1511, gnl|monDom2|scaffold_12 (2160507-2160393) | |
| 1406-1511, gnl|panTro1|chr16 (38254538-38254656) | |
| 1406-1511, gnl|rheMac2|chr7 (18626368-18626486) | |
| 1406-1511, gnl|rn3|chr3 (105104232-105104350) | |
| 1406-1511, gnl|tetNig1|chr14 (7382910-7383028) | |
| 1406-1511, gnl|xenTro1|scaffold_1383 (16811-16929) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) |