Ss1.1-Spl1-SPL010022B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACGATGGCGGCGCTGCGGGGACCTGCCGGGCTCTTCCGGTGGCGCTTGCGGGTCGTGC CGGGAGGGGCGCGGGGCGCAGCAGGGCAGCAATGCTACGACCTCCTGGTGATTGGCGGAG GATCCGGCGGCCTGGCCTGTGCCAAGGAAGCCGCCCAGCTGGGGAAGAAGGTGGCTGTGG TGGACTATGTGAGCCCTTCGCCCCGAGGCACCAGGTGGGGCCTCGGTGGCACCTGCGTGA ATGTTGGCTGCATCCCCAAGAAGCTGATGCACCAGGCAGCCCTTCTGGGGGGCGTGATCC GCGATGCCCCCCACTACGGCTGGGAGGTGGCCCAGCCAGCCCTGCACAGCTGGAGGAAAA TGGCAGAAGCTGTTCAAAACCATGTGAAGTCCCTGAACTGGGGGCACCGGGTCCAGCTAC AGGACAGAAAGGTCAAGTACTTTAACTTCAAGGCCAGCTTTGTCAACAAGCACACAGTTT GTGGGGTCTTGAAAGGCGGAAAAGAGATTCTGCTTTCAGCCGAGCACATTGTCATCGCTA CTGGAGGGCGACCGAGGTATCCTGCACATATCGAAGGTGCTGTGGAATATGGAATTACGA GTGATGACATCTTCTGGCTGAAGGAATCCCCTGGAAAAACGTTGGTGGTCGGGGCCAGCT ACGTGGCCCTGGAGTGTGCTGGCTTCCTCACCGGGCTCGGCCTTGATGCCACCATCATGA TACGCAGCATCCCTCTCCGAGCCTTCGACCAGCAAATGGCTTCCTTGGTCATTGAGCACA TGGCGGTTCATGGCACCCGGATTCTGAAGGGCTGCATGCCCTTGAGAGTGGAGAAGCTCC CAGACGGCCAGCTCCAGGTGACCTGGGTGGACCTGGCCTCAGACAGGAAGGACATGGGCA CCTTTGACACTGTCCTTTGGGCCACAGGTCGGGTCCCAGAAATTGGAAGTCTGAACTTGG AGAAGGCTGGTGTTCACACCAACCCCCACACTCAGAAAATCCTGGTTGACGCCCAGGATG CCACCTCTGTCCCCCACATCTACGCCATAGGAGACGTGGCGGAGGGGCGGCCAGAGCTGA CACCCACGGCAGTCATGGCCGGGAGGCTCCTGGCCCAGCGGCTTTGTGGTCGGTCCTCAG ACCTGATGGATTACGACAATGTGCCCACGACGGTCTTCACGCCACTGGAGTATGGCTGTG TGGGGCTCTCGGAGGAGGCGGCCGTGGCTCGCCATGGAGAGGAGGGTGTGGAGGTTTATC ACGCATATTATAAACCACTGGAGTTCACAGTGCCTGAACGAGATGCGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACGATGGCGGCGCTGCGGGGACCTGCCGGGCTCTTCCGGTGGCGCTTGCGGGTCGTGC CGGGAGGGGCGCGGGGCGCAGCAGGGCAGCAATGCTACGACCTCCTGGTGATTGGCGGAG GATCCGGCGGCCTGGCCTGTGCCAAGGAAGCCGCCCAGCTGGGGAAGAAGGTGGCTGTGG TGGACTATGTGAGCCCTTCGCCCCGAGGCACCAGGTGGGGCCTCGGTGGCACCTGCGTGA ATGTTGGCTGCATCCCCAAGAAGCTGATGCACCAGGCAGCCCTTCTGGGGGGCGTGATCC GCGATGCCCCCCACTACGGCTGGGAGGTGGCCCAGCCAGCCCTGCACAGCTGGAGGAAAA TGGCAGAAGCTGTTCAAAACCATGTGAAGTCCCTGAACTGGGGGCACCGGGTCCAGCTAC AGGACAGAAAGGTCAAGTACTTTAACTTCAAGGCCAGCTTTGTCAACAAGCACACAGTTT GTGGGGTCTTGAAAGGCGGAAAAGAGATTCTGCTTTCAGCCGAGCACATTGTCATCGCTA CTGGAGGGCGACCGAGGTATCCTGCACATATCGAAGGTGCTGTGGAATATGGAATTACGA GTGATGACATCTTCTGGCTGAAGGAATCCCCTGGAAAAACGTTGGTGGTCGGGGCCAGCT ACGTGGCCCTGGAGTGTGCTGGCTTCCTCACCGGGCTCGGCCTTGATGCCACCATCATGA TACGCAGCATCCCTCTCCGAGCCTTCGACCAGCAAATGGCTTCCTTGGTCATTGAGCACA TGGCGGTTCATGGCACCCGGATTCTGAAGGGCTGCATGCCCTTGAGAGTGGAGAAGCTCC CAGACGGCCAGCTCCAGGTGACCTGGGTGGACCTGGCCTCAGACAGGAAGGACATGGGCA CCTTTGACACTGTCCTTTGGGCCACAGGTCGGGTCCCAGAAATTGGAAGTCTGAACTTGG AGAAGGCTGGTGTTCACACCAACCCCCACACTCAGAAAATCCTGGTTGACGCCCAGGATG CCACCTCTGTCCCCCACATCTACGCCATAGGAGACGTGGCGGAGGGGCGGCCAGAGCTGA CACCCACGGCAGTCATGGCCGGGAGGCTCCTGGCCCAGCGGCTTTGTGGTCGGTCCTCAG ACCTGATGGATTACGACAATGTGCCCACGACGGTCTTCACGCCACTGGAGTATGGCTGTG TGGGGCTCTCGGAGGAGGCGGCCGTGGCTCGCCATGGAGAGGAGGGTGTGGAGGTTTATC ACGCATATTATAAACCACTGGAGTTCACAGTGCCTGAACGAGATGCGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 194-312, - strand, RNAz p=0.854914 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 194-312, - strand, RNAz p=0.854914 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_145747, - |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 194-353, gnl|bosTau2|chr17 (45806299-45806455) | |
| 194-353, gnl|canFam2|chr26 (32458212-32458054) | |
| 194-353, gnl|danRer3|chrUn (94631306-94631147) | |
| 194-353, gnl|dasNov1|scaffold_43550 (5995-5886) | |
| 194-353, gnl|echTel1|scaffold_278150 (78662-78505) | |
| 194-353, gnl|fr1|chrUn (80484845-80484997) | |
| 194-353, gnl|galGal2|chr15 (1006683-1006837) | |
| 194-353, gnl|hg17|chr22 (18280929-18281090) | |
| 194-353, gnl|Hg17|chr22 (18281096-18280936) | |
| 194-353, gnl|loxAfr1|scaffold_7064 (2853-2962) | |
| 194-353, gnl|mm7|chr16 (17987385-17987228) | |
| 194-353, gnl|Mm7|chr16 (17987231-17987380) | |
| 194-353, gnl|oryCun1|scaffold_136793 (8075-7917) | |
| 194-353, gnl|rheMac2|chr10 (63971534-63971695) | |
| 194-353, gnl|rn3|chr11 (84592974-84593132) | |
| 194-353, gnl|tetNig1|chr12 (11013384-11013232) | |
| 722-929, gnl|bosTau2|chr17 (45817390-45817593) | |
| 722-929, gnl|canFam2|chr26 (32477549-32477329) | |
| 722-929, gnl|danRer3|chrUn (94647813-94647597) | |
| 722-929, gnl|echTel1|scaffold_52003 (532-731) | |
| 722-929, gnl|fr1|chrUn (80479396-80479582) | |
| 722-929, gnl|galGal2|chr15 (997593-997792) | |
| 722-929, gnl|hg17|chr22 (18257476-18257696) | |
| 722-929, gnl|Hg17|chr22 (18257684-18257482) | |
| 722-929, gnl|loxAfr1|scaffold_62676 (7441-7658) | |
| 722-929, gnl|mm7|chr16 (18005941-18005713) | |
| 722-929, gnl|Mm7|chr16 (18005740-18005933) | |
| 722-929, gnl|oryCun1|scaffold_210986 (49557-49778) | |
| 722-929, gnl|panTro1|chr23 (18239112-18239332) | |
| 722-929, gnl|rheMac2|chr10 (63949316-63949536) | |
| 722-929, gnl|rn3|chr11 (84575583-84575811) | |
| 722-929, gnl|tetNig1|chr12 (11018029-11017834) | |
| 1063-1163, gnl|bosTau2|chr17 (45825198-45825298) | |
| 1063-1163, gnl|canFam2|chr26 (32491296-32491170) | |
| 1063-1163, gnl|echTel1|scaffold_220185 (8917-8778) | |
| 1063-1163, gnl|fr1|chrUn (80474947-80475108) | |
| 1063-1163, gnl|hg17|chr22 (18242681-18242813) | |
| 1063-1163, gnl|Hg17|chr22 (18242796-18242696) | |
| 1063-1163, gnl|loxAfr1|scaffold_59113 (13437-13298) | |
| 1063-1163, gnl|mm7|chr16 (18022002-18021872) | |
| 1063-1163, gnl|Mm7|chr16 (18021885-18021985) | |
| 1063-1163, gnl|panTro1|chr23 (18224291-18224423) | |
| 1063-1163, gnl|rheMac2|chr10 (63934097-63934230) | |
| 1063-1163, gnl|rn3|chr11 (84560842-84560970) | |
| 1063-1163, gnl|tetNig1|chr12 (11022227-11022107) | |
| 1063-1163, gnl|xenTro1|scaffold_118 (932771-932883) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 194-353, gnl|bosTau2|chr17 (45806299-45806455) | |
| 194-353, gnl|canFam2|chr26 (32458212-32458054) | |
| 194-353, gnl|danRer3|chrUn (94631306-94631147) | |
| 194-353, gnl|dasNov1|scaffold_43550 (5995-5886) | |
| 194-353, gnl|echTel1|scaffold_278150 (78662-78505) | |
| 194-353, gnl|fr1|chrUn (80484845-80484997) | |
| 194-353, gnl|galGal2|chr15 (1006683-1006837) | |
| 194-353, gnl|hg17|chr22 (18280929-18281090) | |
| 194-353, gnl|Hg17|chr22 (18281096-18280936) | |
| 194-353, gnl|loxAfr1|scaffold_7064 (2853-2962) | |
| 194-353, gnl|mm7|chr16 (17987385-17987228) | |
| 194-353, gnl|Mm7|chr16 (17987231-17987380) | |
| 194-353, gnl|oryCun1|scaffold_136793 (8075-7917) | |
| 194-353, gnl|rheMac2|chr10 (63971534-63971695) | |
| 194-353, gnl|rn3|chr11 (84592974-84593132) | |
| 194-353, gnl|tetNig1|chr12 (11013384-11013232) | |
| 722-929, gnl|bosTau2|chr17 (45817390-45817593) | |
| 722-929, gnl|canFam2|chr26 (32477549-32477329) | |
| 722-929, gnl|danRer3|chrUn (94647813-94647597) | |
| 722-929, gnl|echTel1|scaffold_52003 (532-731) | |
| 722-929, gnl|fr1|chrUn (80479396-80479582) | |
| 722-929, gnl|galGal2|chr15 (997593-997792) | |
| 722-929, gnl|hg17|chr22 (18257476-18257696) | |
| 722-929, gnl|Hg17|chr22 (18257684-18257482) | |
| 722-929, gnl|loxAfr1|scaffold_62676 (7441-7658) | |
| 722-929, gnl|mm7|chr16 (18005941-18005713) | |
| 722-929, gnl|Mm7|chr16 (18005740-18005933) | |
| 722-929, gnl|oryCun1|scaffold_210986 (49557-49778) | |
| 722-929, gnl|panTro1|chr23 (18239112-18239332) | |
| 722-929, gnl|rheMac2|chr10 (63949316-63949536) | |
| 722-929, gnl|rn3|chr11 (84575583-84575811) | |
| 722-929, gnl|tetNig1|chr12 (11018029-11017834) | |
| 1063-1163, gnl|bosTau2|chr17 (45825198-45825298) | |
| 1063-1163, gnl|canFam2|chr26 (32491296-32491170) | |
| 1063-1163, gnl|echTel1|scaffold_220185 (8917-8778) | |
| 1063-1163, gnl|fr1|chrUn (80474947-80475108) | |
| 1063-1163, gnl|hg17|chr22 (18242681-18242813) | |
| 1063-1163, gnl|Hg17|chr22 (18242796-18242696) | |
| 1063-1163, gnl|loxAfr1|scaffold_59113 (13437-13298) | |
| 1063-1163, gnl|mm7|chr16 (18022002-18021872) | |
| 1063-1163, gnl|Mm7|chr16 (18021885-18021985) | |
| 1063-1163, gnl|panTro1|chr23 (18224291-18224423) | |
| 1063-1163, gnl|rheMac2|chr10 (63934097-63934230) | |
| 1063-1163, gnl|rn3|chr11 (84560842-84560970) | |
| 1063-1163, gnl|tetNig1|chr12 (11022227-11022107) | |
| 1063-1163, gnl|xenTro1|scaffold_118 (932771-932883) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.139256) | |
| pla (0.133672) | |
| med (0.116252) |