Ss1.1-Spl1-SPL010022C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTGGCATCGGCCCGAGCCGCCGGCCGTCTTCCCTCCTTCCCGCCCCGCAGCAGCCCTA GCTCCCTCCTCTCCGCTCCCCCGGCCGCTCTTGCTTGGCCGGGAGCCGCTCTCTTTTCTC TCTGATTCTCAAGCAACAGGACCCGGCGCGGGACACAGACCACCGCCACTATGGGGAAGG GGGTTGGACGCGATAAATATGAGCCCGCAGCCGTGTCAGAGCATGGCGACAAAAAGAAGG CCAAGAAGGAGAGGGATATGGATGAGCTGAAGAAGGAAGTTTCTATGGATGACCATAAAC TTAGCCTTGATGAGCTTCATCGCAAATACGGAACGGACTTGAGCCGAGGCTTAACACCTG CTCGAGCTGCTGAGATCCTGGCCCGAGACGGTCCCAATGCCCTGACGCCCCCTCCCACAA CCCCCGAATGGGTCAAGTTCTGTCGGCAGCTCTTCGGAGGCTTCTCCATGTTACTGTGGA TCGGAGCGATTCTTTGTTTCTTGGCCTATGGCATTCAAGCTGCTACAGAAGAGGAACCTC AAAATGATAATCTGTACCTTGGTGTGGTGCTCTCCGCCGTCGTCATCATAACTGGCTGTT TCTCCTACTATCAAGAAGCGAAAAGCTCAAAGATCATGGAATCCTTCAAAAACATGGTTC CTCAGCAAGCCCTGGTGATTCTAAATGGTGAAAAGATGAGCATAAATGCAGAGGAAGTCG TCGTCGGGGATCTGGTGGAGGTGAAGGGAGGGGATCGAATCCCTGCTGACCTCAGGATCA TATCTGCGAACGGCTGCAAGGTGGACAACTCCTCCCTCACTGGTGAATCAGAACCGCAGA CCAGGTCTCCAGATTTCACCAATGAGAACCCCCTGGAGACTAGGAACATCGCCTTTTTTT CAACCAACTGCGTTGAAGGCACTGCACGTGGTATTGTGGTGTACACTGGCGATCGCACCG TGATGGGCAGAATCGCTACCCTTGCTTCCGGGCTGGAAGGGGGCCAGACTCCCATCGCTG CGGAGATTGAACATTTTATCCACATCATCACGGGCGTGGCCGTGTTCCTGGGCGTGTCCT TCTTCATCCTTTCTCTGATCCTCGAGTACACCTGGCTCGAGGCCGTCATCTTCCTCATCG GGATCATTGTAGCCAACGTGCCTGAAGGTTTGCTGGCCACCGTCACGGTGTGCTTGACCC TGACTGCCAAGCGCATGGCCAGGAAGAACTGCCTTGTGAAGAACTTGGAGGCTGTGGAGA CCCTGGGGTCCACATCCACCATCTGCTCAGACAAAACCGGAACCCTCATCTTCAGAGCCC CCTGGTGGGGCTGGGCTGTGAGAAGATGCATGTTTTTCTCTGGACGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTGGCATCGGCCCGAGCCGCCGGCCGTCTTCCCTCCTTCCCGCCCCGCAGCAGCCCTA GCTCCCTCCTCTCCGCTCCCCCGGCCGCTCTTGCTTGGCCGGGAGCCGCTCTCTTTTCTC TCTGATTCTCAAGCAACAGGACCCGGCGCGGGACACAGACCACCGCCACTATGGGGAAGG GGGTTGGACGCGATAAATATGAGCCCGCAGCCGTGTCAGAGCATGGCGACAAAAAGAAGG CCAAGAAGGAGAGGGATATGGATGAGCTGAAGAAGGAAGTTTCTATGGATGACCATAAAC TTAGCCTTGATGAGCTTCATCGCAAATACGGAACGGACTTGAGCCGAGGCTTAACACCTG CTCGAGCTGCTGAGATCCTGGCCCGAGACGGTCCCAATGCCCTGACGCCCCCTCCCACAA CCCCCGAATGGGTCAAGTTCTGTCGGCAGCTCTTCGGAGGCTTCTCCATGTTACTGTGGA TCGGAGCGATTCTTTGTTTCTTGGCCTATGGCATTCAAGCTGCTACAGAAGAGGAACCTC AAAATGATAATCTGTACCTTGGTGTGGTGCTCTCCGCCGTCGTCATCATAACTGGCTGTT TCTCCTACTATCAAGAAGCGAAAAGCTCAAAGATCATGGAATCCTTCAAAAACATGGTTC CTCAGCAAGCCCTGGTGATTCTAAATGGTGAAAAGATGAGCATAAATGCAGAGGAAGTCG TCGTCGGGGATCTGGTGGAGGTGAAGGGAGGGGATCGAATCCCTGCTGACCTCAGGATCA TATCTGCGAACGGCTGCAAGGTGGACAACTCCTCCCTCACTGGTGAATCAGAACCGCAGA CCAGGTCTCCAGATTTCACCAATGAGAACCCCCTGGAGACTAGGAACATCGCCTTTTTTT CAACCAACTGCGTTGAAGGCACTGCACGTGGTATTGTGGTGTACACTGGCGATCGCACCG TGATGGGCAGAATCGCTACCCTTGCTTCCGGGCTGGAAGGGGGCCAGACTCCCATCGCTG CGGAGATTGAACATTTTATCCACATCATCACGGGCGTGGCCGTGTTCCTGGGCGTGTCCT TCTTCATCCTTTCTCTGATCCTCGAGTACACCTGGCTCGAGGCCGTCATCTTCCTCATCG GGATCATTGTAGCCAACGTGCCTGAAGGTTTGCTGGCCACCGTCACGGTGTGCTTGACCC TGACTGCCAAGCGCATGGCCAGGAAGAACTGCCTTGTGAAGAACTTGGAGGCTGTGGAGA CCCTGGGGTCCACATCCACCATCTGCTCAGACAAAACCGGAACCCTCATCTTCAGAGCCC CCTGGTGGGGCTGGGCTGTGAGAAGATGCATGTTTTTCTCTGGACGAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 182-288, gnl|bosTau2|chr3 (22585646-22585752) | |
| 182-288, gnl|canFam2|chr17 (56902040-56902171) | |
| 182-288, gnl|danRer3|chrNA (9770777-9770919) | |
| 182-288, gnl|dasNov1|scaffold_32374 (7759-7885) | |
| 182-288, gnl|echTel1|scaffold_320144 (110555-110423) | |
| 182-288, gnl|fr1|chrUn (173421858-173421991) | |
| 182-288, gnl|galGal2|chr1 (74387015-74386890) | |
| 182-288, gnl|hg17|chr1 (116638662-116638799) | |
| 182-288, gnl|Hg17|chr1 (116638677-116638789) | |
| 182-288, gnl|loxAfr1|scaffold_13579 (20133-20264) | |
| 182-288, gnl|mm7|chr3 (101389943-101389806) | |
| 182-288, gnl|Mm7|chr3 (101389926-101389814) | |
| 182-288, gnl|monDom2|scaffold_82 (2160994-2161125) | |
| 182-288, gnl|oryCun1|scaffold_203179 (151121-150984) | |
| 182-288, gnl|panTro1|chr1 (116447725-116447862) | |
| 182-288, gnl|rheMac2|chr1 (119357223-119357360) | |
| 182-288, gnl|rn3|chr13 (88468570-88468439) | |
| 182-288, gnl|tetNig1|chr3 (1601752-1601644) | |
| 182-288, gnl|xenTro1|scaffold_1118 (237911-238044) | |
| 372-539, gnl|bosTau2|chr18 (44727308-44727141) | |
| 372-539, gnl|Hg17|chr19 (47184107-47183940) | |
| 372-539, gnl|Mm7|chr7 (21790243-21790076) | |
| 552-665, gnl|bosTau2|chr18 (44725702-44725589) | |
| 552-665, gnl|canFam2|chr1 (115232540-115232402) | |
| 552-665, gnl|danRer3|chr19 (1753061-1753191) | |
| 552-665, gnl|dasNov1|scaffold_105526 (8947-8821) | |
| 552-665, gnl|echTel1|scaffold_235521 (2837-2713) | |
| 552-665, gnl|fr1|chrUn (100137612-100137473) | |
| 552-665, gnl|galGal2|chr1 (74383927-74384062) | |
| 552-665, gnl|hg17|chr19 (47182103-47182241) | |
| 552-665, gnl|Hg17|chr19 (47182221-47182108) | |
| 552-665, gnl|loxAfr1|scaffold_41326 (4748-4619) | |
| 552-665, gnl|mm7|chr7 (21788382-21788520) | |
| 552-665, gnl|Mm7|chr7 (21788500-21788387) | |
| 552-665, gnl|monDom2|scaffold_13 (61501168-61501300) | |
| 552-665, gnl|oryCun1|scaffold_203179 (147264-147390) | |
| 552-665, gnl|panTro1|chr20 (44070772-44070910) | |
| 552-665, gnl|rheMac2|chr19 (48293659-48293797) | |
| 552-665, gnl|rn3|chr1 (80380291-80380429) | |
| 552-665, gnl|tetNig1|chr3 (1578021-1578149) | |
| 552-665, gnl|xenTro1|scaffold_993 (308706-308844) | |
| 914-1194, gnl|bosTau2|chr18 (39558099-39558379) | |
| 914-1194, gnl|Hg17|chr19 (47181183-47180905) | |
| 914-1194, gnl|Mm7|chr1 (172257646-172257366) | |
| 917-1189, gnl|bosTau2|chr18 (44724745-44724473) | |
| 917-1189, gnl|Hg17|chr19 (47181180-47180908) | |
| 917-1189, gnl|Mm7|chr7 (21786889-21786617) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 182-288, gnl|bosTau2|chr3 (22585646-22585752) | |
| 182-288, gnl|canFam2|chr17 (56902040-56902171) | |
| 182-288, gnl|danRer3|chrNA (9770777-9770919) | |
| 182-288, gnl|dasNov1|scaffold_32374 (7759-7885) | |
| 182-288, gnl|echTel1|scaffold_320144 (110555-110423) | |
| 182-288, gnl|fr1|chrUn (173421858-173421991) | |
| 182-288, gnl|galGal2|chr1 (74387015-74386890) | |
| 182-288, gnl|hg17|chr1 (116638662-116638799) | |
| 182-288, gnl|Hg17|chr1 (116638677-116638789) | |
| 182-288, gnl|loxAfr1|scaffold_13579 (20133-20264) | |
| 182-288, gnl|mm7|chr3 (101389943-101389806) | |
| 182-288, gnl|Mm7|chr3 (101389926-101389814) | |
| 182-288, gnl|monDom2|scaffold_82 (2160994-2161125) | |
| 182-288, gnl|oryCun1|scaffold_203179 (151121-150984) | |
| 182-288, gnl|panTro1|chr1 (116447725-116447862) | |
| 182-288, gnl|rheMac2|chr1 (119357223-119357360) | |
| 182-288, gnl|rn3|chr13 (88468570-88468439) | |
| 182-288, gnl|tetNig1|chr3 (1601752-1601644) | |
| 182-288, gnl|xenTro1|scaffold_1118 (237911-238044) | |
| 372-539, gnl|bosTau2|chr18 (44727308-44727141) | |
| 372-539, gnl|Hg17|chr19 (47184107-47183940) | |
| 372-539, gnl|Mm7|chr7 (21790243-21790076) | |
| 552-665, gnl|bosTau2|chr18 (44725702-44725589) | |
| 552-665, gnl|canFam2|chr1 (115232540-115232402) | |
| 552-665, gnl|danRer3|chr19 (1753061-1753191) | |
| 552-665, gnl|dasNov1|scaffold_105526 (8947-8821) | |
| 552-665, gnl|echTel1|scaffold_235521 (2837-2713) | |
| 552-665, gnl|fr1|chrUn (100137612-100137473) | |
| 552-665, gnl|galGal2|chr1 (74383927-74384062) | |
| 552-665, gnl|hg17|chr19 (47182103-47182241) | |
| 552-665, gnl|Hg17|chr19 (47182221-47182108) | |
| 552-665, gnl|loxAfr1|scaffold_41326 (4748-4619) | |
| 552-665, gnl|mm7|chr7 (21788382-21788520) | |
| 552-665, gnl|Mm7|chr7 (21788500-21788387) | |
| 552-665, gnl|monDom2|scaffold_13 (61501168-61501300) | |
| 552-665, gnl|oryCun1|scaffold_203179 (147264-147390) | |
| 552-665, gnl|panTro1|chr20 (44070772-44070910) | |
| 552-665, gnl|rheMac2|chr19 (48293659-48293797) | |
| 552-665, gnl|rn3|chr1 (80380291-80380429) | |
| 552-665, gnl|tetNig1|chr3 (1578021-1578149) | |
| 552-665, gnl|xenTro1|scaffold_993 (308706-308844) | |
| 914-1194, gnl|bosTau2|chr18 (39558099-39558379) | |
| 914-1194, gnl|Hg17|chr19 (47181183-47180905) | |
| 914-1194, gnl|Mm7|chr1 (172257646-172257366) | |
| 917-1189, gnl|bosTau2|chr18 (44724745-44724473) | |
| 917-1189, gnl|Hg17|chr19 (47181180-47180908) | |
| 917-1189, gnl|Mm7|chr7 (21786889-21786617) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) | |
| clu (0.119646) |