Ss1.1-Spl1-SPL010022H06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTTTCCGCGCAGCCCCCCCAGCAGCCCCCCACTTCTACATTCCAGAACTCTCCCTCTG CTTTGGTGTCCACACCTGTGAGGCCTAAGACGTCCAACCGTTACAGCCCAGAGTCCCAGC CTCCGTCTGTCCACCATCAGAGACCAGGTTCAAGGGTCTCTCCGGAAAACCTTGTGGACA AACCCAGGGGAAGCCTCAGGCCTGGGAAGTCCCCAGAGAGGAGCCACATCTCTTCGGAGC CCTACGAGCCCGTGTCCCCGCCACAGGTGCCGGCGGCGCACGAGAAGCAGGACGGCGTGC TGCTGCTGGCCCCGCGAGGCCCCGAGCCCCCGGAGCAGAGGAGCGACTCCCGCTCGCCAG GGAGCATAAGCTACTTGCCTTCGTTCTTCACCAAGCTGGAAAACACGTCCCCCATGGTTA AATCAAAGAAGCAGGAGATTTTTCGTAAGTTGAACTCCTCTGGTGGAGGTGACTCTGATA TGGCTGCTCAGCCAGGAACGGAGATATTTAACCTGCCAGCTGTCACCACCTCAGGTGCGG TGAGCTCCAGGGGCCACACCTTCGCTGACCCGGCCAGCAACCTGGGCCTGGAGGACATCA TCCGCAAGGCGCTCATGGGCAGCTTCGACGACAAGGTGGAGGAGCACGGCGGCGTCCTGC CCCAGCCGGGGGCGGTGGTGCCCGGCGGGGCCGGCACCTCGGTCGCGAGCAGCGGCGAGG CCCGGAGAGAGGAGGGGGACCCCCCGCCGCACGCAGGAGCCGTTTGCAAACCGAAGCTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTTTCCGCGCAGCCCCCCCAGCAGCCCCCCACTTCTACATTCCAGAACTCTCCCTCTG CTTTGGTGTCCACACCTGTGAGGCCTAAGACGTCCAACCGTTACAGCCCAGAGTCCCAGC CTCCGTCTGTCCACCATCAGAGACCAGGTTCAAGGGTCTCTCCGGAAAACCTTGTGGACA AACCCAGGGGAAGCCTCAGGCCTGGGAAGTCCCCAGAGAGGAGCCACATCTCTTCGGAGC CCTACGAGCCCGTGTCCCCGCCACAGGTGCCGGCGGCGCACGAGAAGCAGGACGGCGTGC TGCTGCTGGCCCCGCGAGGCCCCGAGCCCCCGGAGCAGAGGAGCGACTCCCGCTCGCCAG GGAGCATAAGCTACTTGCCTTCGTTCTTCACCAAGCTGGAAAACACGTCCCCCATGGTTA AATCAAAGAAGCAGGAGATTTTTCGTAAGTTGAACTCCTCTGGTGGAGGTGACTCTGATA TGGCTGCTCAGCCAGGAACGGAGATATTTAACCTGCCAGCTGTCACCACCTCAGGTGCGG TGAGCTCCAGGGGCCACACCTTCGCTGACCCGGCCAGCAACCTGGGCCTGGAGGACATCA TCCGCAAGGCGCTCATGGGCAGCTTCGACGACAAGGTGGAGGAGCACGGCGGCGTCCTGC CCCAGCCGGGGGCGGTGGTGCCCGGCGGGGCCGGCACCTCGGTCGCGAGCAGCGGCGAGG CCCGGAGAGAGGAGGGGGACCCCCCGCCGCACGCAGGAGCCGTTTGCAAACCGAAGCTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 72-189, - strand, RNAz p=0.645255 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 72-189, - strand, RNAz p=0.645255 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-189, gnl|bosTau2|chr19 (23940770-23940958) | |
| 1-189, gnl|canFam2|chr5 (42824882-42824689) | |
| 1-189, gnl|danRer3|chr5 (49198863-49198681) | |
| 1-189, gnl|dasNov1|scaffold_875 (92628-92441) | |
| 1-189, gnl|echTel1|scaffold_323836 (78502-78784) | |
| 1-189, gnl|fr1|chrUn (259076171-259075998) | |
| 1-189, gnl|galGal2|chr19 (6041209-6041389) | |
| 1-189, gnl|hg17|chr17 (15901538-15901731) | |
| 1-189, gnl|Hg17|chr17 (15901745-15901557) | |
| 1-189, gnl|loxAfr1|scaffold_85665 (7483-7290) | |
| 1-189, gnl|mm7|chr11 (62410985-62411166) | |
| 1-189, gnl|Mm7|chr11 (62411179-62411003) | |
| 1-189, gnl|monDom2|scaffold_86 (5516759-5516952) | |
| 1-189, gnl|oryCun1|scaffold_211350 (116798-116991) | |
| 1-189, gnl|panTro1|chr19_random (4777695-4777888) | |
| 1-189, gnl|rheMac2|chr16 (16407760-16407567) | |
| 1-189, gnl|rn3|chr10 (48507499-48507680) | |
| 1-189, gnl|tetNig1|chr7 (2107050-2107223) | |
| 1-189, gnl|xenTro1|scaffold_454 (179165-178978) | |
| 339-483, gnl|bosTau2|chr19 (23944343-23944487) | |
| 339-483, gnl|Hg17|chr17 (15891134-15890990) | |
| 339-483, gnl|Mm7|chr11 (62407189-62407045) | |
| 532-757, gnl|bosTau2|chr19 (23947981-23948206) | |
| 532-757, gnl|Hg17|chr17 (15883696-15883471) | |
| 532-757, gnl|Mm7|chr11 (62402778-62402553) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-189, gnl|bosTau2|chr19 (23940770-23940958) | |
| 1-189, gnl|canFam2|chr5 (42824882-42824689) | |
| 1-189, gnl|danRer3|chr5 (49198863-49198681) | |
| 1-189, gnl|dasNov1|scaffold_875 (92628-92441) | |
| 1-189, gnl|echTel1|scaffold_323836 (78502-78784) | |
| 1-189, gnl|fr1|chrUn (259076171-259075998) | |
| 1-189, gnl|galGal2|chr19 (6041209-6041389) | |
| 1-189, gnl|hg17|chr17 (15901538-15901731) | |
| 1-189, gnl|Hg17|chr17 (15901745-15901557) | |
| 1-189, gnl|loxAfr1|scaffold_85665 (7483-7290) | |
| 1-189, gnl|mm7|chr11 (62410985-62411166) | |
| 1-189, gnl|Mm7|chr11 (62411179-62411003) | |
| 1-189, gnl|monDom2|scaffold_86 (5516759-5516952) | |
| 1-189, gnl|oryCun1|scaffold_211350 (116798-116991) | |
| 1-189, gnl|panTro1|chr19_random (4777695-4777888) | |
| 1-189, gnl|rheMac2|chr16 (16407760-16407567) | |
| 1-189, gnl|rn3|chr10 (48507499-48507680) | |
| 1-189, gnl|tetNig1|chr7 (2107050-2107223) | |
| 1-189, gnl|xenTro1|scaffold_454 (179165-178978) | |
| 339-483, gnl|bosTau2|chr19 (23944343-23944487) | |
| 339-483, gnl|Hg17|chr17 (15891134-15890990) | |
| 339-483, gnl|Mm7|chr11 (62407189-62407045) | |
| 532-757, gnl|bosTau2|chr19 (23947981-23948206) | |
| 532-757, gnl|Hg17|chr17 (15883696-15883471) | |
| 532-757, gnl|Mm7|chr11 (62402778-62402553) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |