Non-Coding RNA Search

Ss1.1-Spl1-SPL010023B02.5

Sequence:


               
               GTCTAATTTCAAAAGATGCTCATTTGGCCAGAGGTCACTGGTGGCATTTGCATCACTGGG
CCCAGGCCGCTTCATACTCTCTAGAGCTTGTTCTCCTGGGTACCTTCTGGCCAGCTGTGA
AAGTCTCAGATCCTACTGTGATCTTGTTTTTGTAGACGGGCCCACCTTCGCTTGTGCCTG
GCAAAAATTGAAGGGGCTGGTGCCACTTGGTCCAGAATCAAATCGACACACCACGTTGAG
TTTATTAACAAAAGCCAAATTGCACATAAAGGTAAGAGCATCCTGGGATGGTGTCCTTCT
GTCTTTACCTACCTGGTGAGGGCTTGTTTGTTGTTATGAGGGACGGATATGATTCGCCAG
GACAGTTCTCTCCTCTCAATTCCTCCAGCCTGCCTCTTGGATGAACACAGACTCAACACG
TCCAGAACCCAACTGAGTAGTTCTCACCCGGTGTGTGTTTCAGAAATGAAACTGTCCCTC
CATCTGATGCATGAGCCAGAAATGCAGGGTCATCCTCGATCTTGATGATCATTGTGCTCC
TTAGCCACGTGTGTCCACAACTCACCCATGTCACAGCTGCTCTATTTCCACAAACCCCGT
CAGCTACTGCAGTAAACTCCTCAGAGGCCTCCTCCAAGCTAATCTCCATACTTCCCAAGA
ACAGTCTTGCCAGAGCTAAAATCTACATGTCACCGTGTTTTAAAATTCTTCCACAGCTCA
GGACACATTGTATCACCAGGCCTGCCTGACCCAGCCTCCTTTGCCCTTGGGGCAGCAGCT
TGTGCCAGACACTCCCCAGCCCTTCTTTCCACCCGTTGCCAGGCTCTCCCACCACAGGGC
GTTTGTACATGCTGTGCCCTCTGCTTAGTATGCTCTCCCCTCCCTTCTTCACCTAGTGAG
CTTCTTGTCATCCTTCAGACCTCGGCACGGGTATCCCCAGTGCAGGGAAACCTTCCCTGA
CTCAGTCACCTCCTTCCCGAGACAGATGGTCCTTATTATTGGATCTCTCTCTTAGCACAT
GTCACAAGTGACATCTGACCATGGTTTATGTGACTGTAGTTGTTTCCATCTGCTCTGTTA
GAATATAGACCCCACAAGGAAGGAGACCAGATCTTTGTGTTCCCGTTGTGTCTCCACACC
TCCCAGACGGTCTGAGACAGAGTCAGCACTCAGTATGTGGCTTAAACAGCAAATGGCAAC
TCCTGAGAGCCACAGCCAGCATCACTGTTGAGCATGTTTTTATAGTCATAGAGTCCGTGA
CTGGACAAATGTCACTTGAATCAGGGTTAGTAGCCGGCATACATGGCAGTTCTGGGGGGA
AAAGAACGTCTGCTTAGAGCAAAACAAGCGCAGTTATACAGCCTTCATAATAATCTAAAG
AGTTATCCTAGAAGCTAGAGGACAGATTTGTAAAAACAAGTGATCTAGGAGTTCCCTGGT
GGCTCAGCAGGTTAAGGATGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTAATTTCAAAAGATGCTCATTTGGCCAGAGGTCACTGGTGGCATTTGCATCACTGGG
CCCAGGCCGCTTCATACTCTCTAGAGCTTGTTCTCCTGGGTACCTTCTGGCCAGCTGTGA
AAGTCTCAGATCCTACTGTGATCTTGTTTTTGTAGACGGGCCCACCTTCGCTTGTGCCTG
GCAAAAATTGAAGGGGCTGGTGCCACTTGGTCCAGAATCAAATCGACACACCACGTTGAG
TTTATTAACAAAAGCCAAATTGCACATAAAGGTAAGAGCATCCTGGGATGGTGTCCTTCT
GTCTTTACCTACCTGGTGAGGGCTTGTTTGTTGTTATGAGGGACGGATATGATTCGCCAG
GACAGTTCTCTCCTCTCAATTCCTCCAGCCTGCCTCTTGGATGAACACAGACTCAACACG
TCCAGAACCCAACTGAGTAGTTCTCACCCGGTGTGTGTTTCAGAAATGAAACTGTCCCTC
CATCTGATGCATGAGCCAGAAATGCAGGGTCATCCTCGATCTTGATGATCATTGTGCTCC
TTAGCCACGTGTGTCCACAACTCACCCATGTCACAGCTGCTCTATTTCCACAAACCCCGT
CAGCTACTGCAGTAAACTCCTCAGAGGCCTCCTCCAAGCTAATCTCCATACTTCCCAAGA
ACAGTCTTGCCAGAGCTAAAATCTACATGTCACCGTGTTTTAAAATTCTTCCACAGCTCA
GGACACATTGTATCACCAGGCCTGCCTGACCCAGCCTCCTTTGCCCTTGGGGCAGCAGCT
TGTGCCAGACACTCCCCAGCCCTTCTTTCCACCCGTTGCCAGGCTCTCCCACCACAGGGC
GTTTGTACATGCTGTGCCCTCTGCTTAGTATGCTCTCCCCTCCCTTCTTCACCTAGTGAG
CTTCTTGTCATCCTTCAGACCTCGGCACGGGTATCCCCAGTGCAGGGAAACCTTCCCTGA
CTCAGTCACCTCCTTCCCGAGACAGATGGTCCTTATTATTGGATCTCTCTCTTAGCACAT
GTCACAAGTGACATCTGACCATGGTTTATGTGACTGTAGTTGTTTCCATCTGCTCTGTTA
GAATATAGACCCCACAAGGAAGGAGACCAGATCTTTGTGTTCCCGTTGTGTCTCCACACC
TCCCAGACGGTCTGAGACAGAGTCAGCACTCAGTATGTGGCTTAAACAGCAAATGGCAAC
TCCTGAGAGCCACAGCCAGCATCACTGTTGAGCATGTTTTTATAGTCATAGAGTCCGTGA
CTGGACAAATGTCACTTGAATCAGGGTTAGTAGCCGGCATACATGGCAGTTCTGGGGGGA
AAAGAACGTCTGCTTAGAGCAAAACAAGCGCAGTTATACAGCCTTCATAATAATCTAAAG
AGTTATCCTAGAAGCTAGAGGACAGATTTGTAAAAACAAGTGATCTAGGAGTTCCCTGGT
GGCTCAGCAGGTTAAGGATGCTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-119, + strand, RNAz p=0.577183

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-119, + strand, RNAz p=0.577183

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-1430, gnl|bosTau2|chr11 (48360815-48359380)
               

               
               3-1430, gnl|Hg17|chr2 (70073979-70075457)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1430, gnl|bosTau2|chr11 (48360815-48359380)
               

               
               3-1430, gnl|Hg17|chr2 (70073979-70075457)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               pla (0.133672)

	3-1430, gnl\|bosTau2\|chr11 (48360815-48359380)
	3-1430, gnl\|Hg17\|chr2 (70073979-70075457)