Non-Coding RNA Search

Ss1.1-Spl1-SPL010023E04.5

Sequence:


               
               TGGAGGCGGCGGAGCCGGAGCCGGGTGAGGGGGCAGCGGCTGTCTGACGGACCGCGGTGG
CGCCCGCAGCTCCTCACCGAAACAAGGAGACCAGTGCCGGTCCAGTGGCTGTGATGGGGA
AGGATTACTACAAGATTCTTGGAATTCCGTCGGGAGCCAACGAAGATGAGATCAAGAAAG
CCTATCGAAAAATGGCATTGAAGTACCACCCAGACAAGAACAAAGAACCCAATGCTGAAG
AGAAGTTTAAGGAGATTGCTGAGGCCTATGATGTGCTGAGTGACCCTAAGAAACGGGGCC
TGTATGACCAATATGGGGAGGAAGGCCTGAAGACCGGCGGTGGTTCATCAGGTGGCTCCA
GTGGCTCCTTTCACTACACCTTTCATGGGGACCCCCATGCCACCTTTGCCTCCTTCTTTG
GAGGCTCCAACCCCTTCGATATCTTCTTTGCCAGCAGTCGTTCCACTCGACCTTTCAGTG
GCTTTGACCCAGATGACATGGATGTGGATGAAGATGAGGACCCATTTGGCGCTTTTGGCC
GCTTTGGCTTCAATGGGCTGAGTAGAGGTCCGAGGCGAGCCCCAGAACCACTTTACCCTC
GGCGCAAGGTGCAGGACCCACCTGTGGTGCATGAGCTGAGGGTATCCCTGGAGGAAATCT
ACCACGGCTCCACCAAACGCATGAAGATCACAAGGCGGCGCCTCAACCCTGACGGGAGAA
CTGTACGCACCGAGGACAAGATCCTACACATTGTCATCAAGCGTGGCTGGAAGGAAGGCA
CCAAGATCACCTTCCCCAAAGAGGGCGATGCCACACCTGACAACATCCCTGCCGACATCG
TCTTCGTGCTCAAAGACAAGCCCCATGCACACTTCCGCCGAGATGGCACCAATGTGCTCT
ACAGCGCCCTGATCAGCCTCAAGGAGGCACTGTGTGGCTGCACCGTGAACATTCCCACCA
TTGATGGCCGAGTGATCCCTTTGCCCTGCAATGATGTCATCAAACCAGGCACCGTGAAGA
GACTCCGTGGGGAGGGCCTTCCCTTCCCCAAGGTGCCCACCCAGCGGGGAGACCTCATTG
TCGAGTTCAAAGTTCGCTTCCCAGATAGATTAACACCACAAACACGACAGATCCTTAAGC
AGCACCTACCTTGTTCCTAGGCTCTGCCCCAGCCAGTCCAGAGTCTACCACAGCAATACC
CCACACACACCCCATCCAATGTGCACCCAGCTTGATGTCCACTGGACACTGGCAACCTTT
CTAAAATGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGGCGGCGGAGCCGGAGCCGGGTGAGGGGGCAGCGGCTGTCTGACGGACCGCGGTGG
CGCCCGCAGCTCCTCACCGAAACAAGGAGACCAGTGCCGGTCCAGTGGCTGTGATGGGGA
AGGATTACTACAAGATTCTTGGAATTCCGTCGGGAGCCAACGAAGATGAGATCAAGAAAG
CCTATCGAAAAATGGCATTGAAGTACCACCCAGACAAGAACAAAGAACCCAATGCTGAAG
AGAAGTTTAAGGAGATTGCTGAGGCCTATGATGTGCTGAGTGACCCTAAGAAACGGGGCC
TGTATGACCAATATGGGGAGGAAGGCCTGAAGACCGGCGGTGGTTCATCAGGTGGCTCCA
GTGGCTCCTTTCACTACACCTTTCATGGGGACCCCCATGCCACCTTTGCCTCCTTCTTTG
GAGGCTCCAACCCCTTCGATATCTTCTTTGCCAGCAGTCGTTCCACTCGACCTTTCAGTG
GCTTTGACCCAGATGACATGGATGTGGATGAAGATGAGGACCCATTTGGCGCTTTTGGCC
GCTTTGGCTTCAATGGGCTGAGTAGAGGTCCGAGGCGAGCCCCAGAACCACTTTACCCTC
GGCGCAAGGTGCAGGACCCACCTGTGGTGCATGAGCTGAGGGTATCCCTGGAGGAAATCT
ACCACGGCTCCACCAAACGCATGAAGATCACAAGGCGGCGCCTCAACCCTGACGGGAGAA
CTGTACGCACCGAGGACAAGATCCTACACATTGTCATCAAGCGTGGCTGGAAGGAAGGCA
CCAAGATCACCTTCCCCAAAGAGGGCGATGCCACACCTGACAACATCCCTGCCGACATCG
TCTTCGTGCTCAAAGACAAGCCCCATGCACACTTCCGCCGAGATGGCACCAATGTGCTCT
ACAGCGCCCTGATCAGCCTCAAGGAGGCACTGTGTGGCTGCACCGTGAACATTCCCACCA
TTGATGGCCGAGTGATCCCTTTGCCCTGCAATGATGTCATCAAACCAGGCACCGTGAAGA
GACTCCGTGGGGAGGGCCTTCCCTTCCCCAAGGTGCCCACCCAGCGGGGAGACCTCATTG
TCGAGTTCAAAGTTCGCTTCCCAGATAGATTAACACCACAAACACGACAGATCCTTAAGC
AGCACCTACCTTGTTCCTAGGCTCTGCCCCAGCCAGTCCAGAGTCTACCACAGCAATACC
CCACACACACCCCATCCAATGTGCACCCAGCTTGATGTCCACTGGACACTGGCAACCTTT
CTAAAATGCAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5T656_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T656_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               323-481, - strand, RNAz p=0.991465
               

               
               722-881, - strand, RNAz p=0.917597

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               323-481, - strand, RNAz p=0.991465
               

               
               722-881, - strand, RNAz p=0.917597

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               323-927, gnl|bosTau2|chr8 (27813209-27813813)
               

               
               323-927, gnl|Hg17|chr9 (34986260-34986864)
               

               
               323-927, gnl|Mm7|chr4 (42970338-42970942)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               323-927, gnl|bosTau2|chr8 (27813209-27813813)
               

               
               323-927, gnl|Hg17|chr9 (34986260-34986864)
               

               
               323-927, gnl|Mm7|chr4 (42970338-42970942)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               aor (0.195274)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	323-481, - strand, RNAz p=0.991465
	722-881, - strand, RNAz p=0.917597

	323-927, gnl\|bosTau2\|chr8 (27813209-27813813)
	323-927, gnl\|Hg17\|chr9 (34986260-34986864)
	323-927, gnl\|Mm7\|chr4 (42970338-42970942)

	aor (0.195274)
	hyp (0.142837)
	ste (0.135208)
	ebs (0.118301)
	ecc (0.115035)
	cty (0.10408)