Ss1.1-Spl1-SPL010023E12.5
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ATGACTTTTGAACTGCGGAAACGTTTGGCTGAGAAAAAGGACTTCAGTTTAATGTGAGAT
CACTGGAAGTCGAGATATTCGAATGCTGCGCAGAGCCCTTTCCTCGATTTTCCCACTTTG
TGCTCTCTTCCGGTAGCCGTGATTAACCATAGTTAACGAGTGTCTTAAAGACTTAGGGGT
TTTTACCGGTGGTGCCCAGATTCAGCCTCACAGTATCCCTGTTCGGTTCGGATCCTGTTA
ATGGTTTTGGCCGTGCCTTCATGTAGGACCTGCTACCTAGCCCGCCCGCCGCGGCTGGGC
TTCATCATCAGGCCTCCTCACCAGCTCCTGTCCCTTCTTTTGGGTCCTCGGCTCCGGATA
CTTCGACTCTCAATACTTTGTGCTCAGCCCAGACCCAGATCCATGGCTATTTCCTCTTCC
TCCTGGGACTTGCCCCTCGTGGCTGTGTGCCAGGTAACATCCACACCGGACAAGCAGCAG
AACTTTAAAACATGTGCTGAGCTGGTTCGAGAGGCTGCCAGACTGGGCGCTTGCCTGGCT
TTCCTGCCTGAGGCATTTGACTTCATTGGAAGGGACCCTGAAGAGACGCTACGCCTGTCT
GAGCCACTGGGTGGGAAACTTTTGGGAGAATATACCCAGCTTGCCAGGGAATGTGGACTC
TGGCTGTCCTTGGGTGGTTTCCATGAGCGTGGCCAAGACTGGGAGCAGACTCAGAAAATC
TACAATTGTCATGTGATTCTGAACAACACGGGGTCAGTAGTGGCCACTTACAGGAAGACG
CATCTGTGTGATGTTGAGATTCCAGGGCAGGGGCCTATGCGTGAAAGCAACTCTACCATA
CCTGGGCCCAGTCTTGAGCCTCCGGTCAGCACACCAGCAGGCAAGATTGGTCTAGCTATC
TGCTATGACATGCGGTTCCCTGAACTCTCTCTGGCATTGGTTCAGGCTGGAGCAGAAATA
CTTACCTACCCTTCAGCTTTTGGATCTGTTACAGGCCCAGCCCACTGGGAGGTGTTGCTG
CGGGCCCGAGCCATTGAAACTCAGTGCTATGTAGTGGCGGCAGCACAGTGTGGACGCCAC
CATGAGAAGAGAGCAAGTTATGGCCATAGCATGGTGGTAGATCCCTGGGGAACGGTGGTG
GCCCGCTGCTCTGAAGGACCAGGCCTCTGCCTTGCCCGAATTGACCTCAATTATCTGCGA
CAGTTGCGCCAACACCTGCCTGTGTTCCAGCACCGCAGGCCTGATCTCTATGGCAGTCTG
GGTCACCCACTGTCTTAAGACTTCTGACTTCTGTCAGTTGAGACCCCTATTGTGAGCTGG
TGTTGCTGTGACTTGTAGGCAGGACCCAGGCGCAGCTCCCCTCACTTGGAGAACCTTGTC
TCTTGATGAAACACAGGCTCAGCTCCTTGGGAAAGAAGAAACTTTCACCTAAGCTCAGAT
TTCAGTTTCAGAAAGGTAGAATTTTATATAGTCACTGTTTATTTCATGAAAACTGAAGTT
ACGCTGAGGGCTGAGCAGCACTGGCATTGAAAAAAATATAATAATCAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATGACTTTTGAACTGCGGAAACGTTTGGCTGAGAAAAAGGACTTCAGTTTAATGTGAGAT
CACTGGAAGTCGAGATATTCGAATGCTGCGCAGAGCCCTTTCCTCGATTTTCCCACTTTG
TGCTCTCTTCCGGTAGCCGTGATTAACCATAGTTAACGAGTGTCTTAAAGACTTAGGGGT
TTTTACCGGTGGTGCCCAGATTCAGCCTCACAGTATCCCTGTTCGGTTCGGATCCTGTTA
ATGGTTTTGGCCGTGCCTTCATGTAGGACCTGCTACCTAGCCCGCCCGCCGCGGCTGGGC
TTCATCATCAGGCCTCCTCACCAGCTCCTGTCCCTTCTTTTGGGTCCTCGGCTCCGGATA
CTTCGACTCTCAATACTTTGTGCTCAGCCCAGACCCAGATCCATGGCTATTTCCTCTTCC
TCCTGGGACTTGCCCCTCGTGGCTGTGTGCCAGGTAACATCCACACCGGACAAGCAGCAG
AACTTTAAAACATGTGCTGAGCTGGTTCGAGAGGCTGCCAGACTGGGCGCTTGCCTGGCT
TTCCTGCCTGAGGCATTTGACTTCATTGGAAGGGACCCTGAAGAGACGCTACGCCTGTCT
GAGCCACTGGGTGGGAAACTTTTGGGAGAATATACCCAGCTTGCCAGGGAATGTGGACTC
TGGCTGTCCTTGGGTGGTTTCCATGAGCGTGGCCAAGACTGGGAGCAGACTCAGAAAATC
TACAATTGTCATGTGATTCTGAACAACACGGGGTCAGTAGTGGCCACTTACAGGAAGACG
CATCTGTGTGATGTTGAGATTCCAGGGCAGGGGCCTATGCGTGAAAGCAACTCTACCATA
CCTGGGCCCAGTCTTGAGCCTCCGGTCAGCACACCAGCAGGCAAGATTGGTCTAGCTATC
TGCTATGACATGCGGTTCCCTGAACTCTCTCTGGCATTGGTTCAGGCTGGAGCAGAAATA
CTTACCTACCCTTCAGCTTTTGGATCTGTTACAGGCCCAGCCCACTGGGAGGTGTTGCTG
CGGGCCCGAGCCATTGAAACTCAGTGCTATGTAGTGGCGGCAGCACAGTGTGGACGCCAC
CATGAGAAGAGAGCAAGTTATGGCCATAGCATGGTGGTAGATCCCTGGGGAACGGTGGTG
GCCCGCTGCTCTGAAGGACCAGGCCTCTGCCTTGCCCGAATTGACCTCAATTATCTGCGA
CAGTTGCGCCAACACCTGCCTGTGTTCCAGCACCGCAGGCCTGATCTCTATGGCAGTCTG
GGTCACCCACTGTCTTAAGACTTCTGACTTCTGTCAGTTGAGACCCCTATTGTGAGCTGG
TGTTGCTGTGACTTGTAGGCAGGACCCAGGCGCAGCTCCCCTCACTTGGAGAACCTTGTC
TCTTGATGAAACACAGGCTCAGCTCCTTGGGAAAGAAGAAACTTTCACCTAAGCTCAGAT
TTCAGTTTCAGAAAGGTAGAATTTTATATAGTCACTGTTTATTTCATGAAAACTGAAGTT
ACGCTGAGGGCTGAGCAGCACTGGCATTGAAAAAAATATAATAATCAC
|
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gi|49456647|emb|CAG46644.1| |
Protein identifier
|
gi|49456647|emb|CAG46644.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
390-648, gnl|bosTau2|chr3 (7896786-7896528) |
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390-648, gnl|Hg17|chr1 (157901994-157902252) |
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390-648, gnl|Mm7|chr1 (171314635-171314380) |
| |
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751-890, gnl|bosTau2|chr3 (7896107-7895968) |
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751-890, gnl|canFam2|chr38 (24353474-24353288) |
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751-890, gnl|danRer3|chr13 (3793768-3793924) |
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751-890, gnl|echTel1|scaffold_297025 (45749-45935) |
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751-890, gnl|fr1|chrUn (202867600-202867769) |
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751-890, gnl|hg17|chr1 (157902680-157902849) |
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751-890, gnl|Hg17|chr1 (157902681-157902820) |
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751-890, gnl|loxAfr1|scaffold_11180 (68910-69085) |
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751-890, gnl|mm7|chr1 (171313924-171313766) |
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751-890, gnl|Mm7|chr1 (171313921-171313782) |
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751-890, gnl|monDom2|scaffold_0 (28730984-28730802) |
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751-890, gnl|oryCun1|scaffold_208402 (107340-107159) |
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751-890, gnl|panTro1|chr1 (139969721-139969890) |
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751-890, gnl|rheMac2|chr1 (139730372-139730541) |
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751-890, gnl|rn3|chr13 (87433132-87432974) |
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751-890, gnl|xenTro1|scaffold_1017 (228843-228672) |
| |
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1010-1547, gnl|bosTau2|chr3 (7895413-7894876) |
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1010-1547, gnl|Hg17|chr1 (157903360-157903920) |
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1010-1547, gnl|Mm7|chr1 (171312892-171312340) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
390-648, gnl|bosTau2|chr3 (7896786-7896528) |
|
390-648, gnl|Hg17|chr1 (157901994-157902252) |
|
390-648, gnl|Mm7|chr1 (171314635-171314380) |
| |
|
751-890, gnl|bosTau2|chr3 (7896107-7895968) |
|
751-890, gnl|canFam2|chr38 (24353474-24353288) |
|
751-890, gnl|danRer3|chr13 (3793768-3793924) |
|
751-890, gnl|echTel1|scaffold_297025 (45749-45935) |
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751-890, gnl|fr1|chrUn (202867600-202867769) |
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751-890, gnl|hg17|chr1 (157902680-157902849) |
|
751-890, gnl|Hg17|chr1 (157902681-157902820) |
|
751-890, gnl|loxAfr1|scaffold_11180 (68910-69085) |
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751-890, gnl|mm7|chr1 (171313924-171313766) |
|
751-890, gnl|Mm7|chr1 (171313921-171313782) |
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751-890, gnl|monDom2|scaffold_0 (28730984-28730802) |
|
751-890, gnl|oryCun1|scaffold_208402 (107340-107159) |
|
751-890, gnl|panTro1|chr1 (139969721-139969890) |
|
751-890, gnl|rheMac2|chr1 (139730372-139730541) |
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751-890, gnl|rn3|chr13 (87433132-87432974) |
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751-890, gnl|xenTro1|scaffold_1017 (228843-228672) |
| |
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1010-1547, gnl|bosTau2|chr3 (7895413-7894876) |
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1010-1547, gnl|Hg17|chr1 (157903360-157903920) |
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1010-1547, gnl|Mm7|chr1 (171312892-171312340) |
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clu (0.957167) |
|
cov (0.528611) |
|
ill (0.351185) |
|
nje (0.33184) |
|
cki (0.330469) |
|
che (0.272628) |
|
fce (0.271592) |
|
fcc (0.197785) |
|
sag (0.182715) |
|
sin (0.174948) |
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duo (0.172801) |
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tbr (0.154178) |
|
cli (0.152812) |
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cag (0.151194) |
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lun (0.150489) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
eep (0.122564) |
|
spc (0.113366) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
clu (0.957167) |
|
cov (0.528611) |
|
ill (0.351185) |
|
nje (0.33184) |
|
cki (0.330469) |
|
che (0.272628) |
|
fce (0.271592) |
|
fcc (0.197785) |
|
sag (0.182715) |
|
sin (0.174948) |
|
duo (0.172801) |
|
tbr (0.154178) |
|
cli (0.152812) |
|
cag (0.151194) |
|
lun (0.150489) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
eep (0.122564) |
|
spc (0.113366) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
eje (0.0988338) |
