Ss1.1-Spl1-SPL010023F02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAGCCGGCGCTGGAATCGGAACGGAGGTGGCTGCTGTGGCGCCGGCTCCCCCGGGAGT GGGTGTCTGACCCCGACCGCGGGCGGCGGTGAGGGGAGCGCCTCCGGGTCAAGCTATGGT GGAAGATGTTTCGGAAAGGCAAAAAGCGCCACAGTAGCAGCAGTTCCCAGAGCAGTGAAA TCAGTACCAAGAGCAAGTCGGTGGACTCCAGCCTTGGGGGGCTCTCCCGGTCCAGCACTG TGGCAAGCCTCGATACAGATTCTACCAAGAGCTCAGGACAAAGCAACAATAATTCAGATA CCTGTGCAGAATTTCGAATAAAATATGTTGGTGCCATCGAGAAGCTGAAACTCTCGGAGG GAAAAAGTCTCGAAGGGCCACTCGACCTGATAAATTATATAGATGTTGCCCAGCAAGATG GAAAGTTGCCTTTCGTTCCTCTGGAGGAAGAATTTATCATGGGAGTTTCCAAGTATGGGA TAAAAGTATCCACATCGGATCAGTATGACGTTCTGCACAGGCACGCGCTGTATTTAATTA TCCGGATGGTGTGCTATGACGACGGCCTGGGGGCGGGGAAAAGCTTACTGGCTCTGAAGA CCACAGATGCCAGCCACGAAGAATACAGCCTGTGGGTTTACCAGTGCAGCAGCCTGGAAC AGGCACAAGCCATCTGCAAAGTTTTAGCCACCGCTTTTGACTCTGTGCTGACATCTGAGA AACCCTGACTTCTGCAACCCAGGGACGTCACCGTCACACGCAAGTTCCGCTTTTTCTCAG CAGTTGTTTGCCGTCTTGAGCGCTGCCCTTTTACAGAAATTCCCATGATCCCCTGCTCTA GACTGAAGGAAATGCGATGTGTAAAATCTCAGCCGTTTGTCTATTAAAACGTGTCTTACA ACAGTGAGTTAACGCTCGACGAAGTGCCCTGTCTCCTGGGACTGAAAAAAGAAACGTCGC CTGTTGCTTTTAAACACAGATGAGCTTAATAAGCTTTGTGCGGCACAGAAGTGCACCCAG CGAGTGAGGCGTGGAGGACCTGCGAGGACGGGGCCGTCTGTGCTGCAGCGCTGGCCCGTG GTGCGCTCTGGCCGGGGGACCCGGTCATGCTGGTCTGAAACAGTGACACCGCCAACTCAA GACACAGCCAGCCTTTGAAAGCGTGTTGTCGTGGAGGTCCTGCCGTACTGTGCACAGCGG GTTAAGGCTCCTACTGCTGCAGCTCGGGTTGCTGCGGAGGTGTGGGTTCGATCCCTGACC TGGCACAGTGGGTTAAGGATCAGCATTACCGCAGCTGGACACAGGTCGTAGCTCTGGCTC TGATTTGATCCCTGGCCCAGGAACTCCCATGTGCTGCGGGTGCAGCCAAAAAAAGTATGT TGTCATGGAGTTCCCATCATGGTGCCTCAGAAACGAATCCGACTGGTATCCATGAGGATG CAGGTTCAATCCCTGGCCGCACTCAGTGGGTCGGGATCTGGCAGTGGCTGTGGTGTAGGC TGGCAGCTGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAGCCGGCGCTGGAATCGGAACGGAGGTGGCTGCTGTGGCGCCGGCTCCCCCGGGAGT GGGTGTCTGACCCCGACCGCGGGCGGCGGTGAGGGGAGCGCCTCCGGGTCAAGCTATGGT GGAAGATGTTTCGGAAAGGCAAAAAGCGCCACAGTAGCAGCAGTTCCCAGAGCAGTGAAA TCAGTACCAAGAGCAAGTCGGTGGACTCCAGCCTTGGGGGGCTCTCCCGGTCCAGCACTG TGGCAAGCCTCGATACAGATTCTACCAAGAGCTCAGGACAAAGCAACAATAATTCAGATA CCTGTGCAGAATTTCGAATAAAATATGTTGGTGCCATCGAGAAGCTGAAACTCTCGGAGG GAAAAAGTCTCGAAGGGCCACTCGACCTGATAAATTATATAGATGTTGCCCAGCAAGATG GAAAGTTGCCTTTCGTTCCTCTGGAGGAAGAATTTATCATGGGAGTTTCCAAGTATGGGA TAAAAGTATCCACATCGGATCAGTATGACGTTCTGCACAGGCACGCGCTGTATTTAATTA TCCGGATGGTGTGCTATGACGACGGCCTGGGGGCGGGGAAAAGCTTACTGGCTCTGAAGA CCACAGATGCCAGCCACGAAGAATACAGCCTGTGGGTTTACCAGTGCAGCAGCCTGGAAC AGGCACAAGCCATCTGCAAAGTTTTAGCCACCGCTTTTGACTCTGTGCTGACATCTGAGA AACCCTGACTTCTGCAACCCAGGGACGTCACCGTCACACGCAAGTTCCGCTTTTTCTCAG CAGTTGTTTGCCGTCTTGAGCGCTGCCCTTTTACAGAAATTCCCATGATCCCCTGCTCTA GACTGAAGGAAATGCGATGTGTAAAATCTCAGCCGTTTGTCTATTAAAACGTGTCTTACA ACAGTGAGTTAACGCTCGACGAAGTGCCCTGTCTCCTGGGACTGAAAAAAGAAACGTCGC CTGTTGCTTTTAAACACAGATGAGCTTAATAAGCTTTGTGCGGCACAGAAGTGCACCCAG CGAGTGAGGCGTGGAGGACCTGCGAGGACGGGGCCGTCTGTGCTGCAGCGCTGGCCCGTG GTGCGCTCTGGCCGGGGGACCCGGTCATGCTGGTCTGAAACAGTGACACCGCCAACTCAA GACACAGCCAGCCTTTGAAAGCGTGTTGTCGTGGAGGTCCTGCCGTACTGTGCACAGCGG GTTAAGGCTCCTACTGCTGCAGCTCGGGTTGCTGCGGAGGTGTGGGTTCGATCCCTGACC TGGCACAGTGGGTTAAGGATCAGCATTACCGCAGCTGGACACAGGTCGTAGCTCTGGCTC TGATTTGATCCCTGGCCCAGGAACTCCCATGTGCTGCGGGTGCAGCCAAAAAAAGTATGT TGTCATGGAGTTCCCATCATGGTGCCTCAGAAACGAATCCGACTGGTATCCATGAGGATG CAGGTTCAATCCCTGGCCGCACTCAGTGGGTCGGGATCTGGCAGTGGCTGTGGTGTAGGC TGGCAGCTGCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 92-204, gnl|bosTau2|chr11 (69790201-69790088) | |
| 92-204, gnl|Hg17|chr2 (9509461-9509341) | |
| 92-204, gnl|Mm7|chr12 (19638910-19638797) | |
| 275-413, gnl|bosTau2|chr11 (69785831-69785693) | |
| 275-413, gnl|canFam2|chr17 (9502102-9502251) | |
| 275-413, gnl|dasNov1|scaffold_29764 (5376-5227) | |
| 275-413, gnl|echTel1|scaffold_286478 (86464-86615) | |
| 275-413, gnl|fr1|chrUn (134375083-134374944) | |
| 275-413, gnl|galGal2|chr3 (94450466-94450612) | |
| 275-413, gnl|hg17|chr2 (9502990-9503139) | |
| 275-413, gnl|Hg17|chr2 (9503134-9502996) | |
| 275-413, gnl|loxAfr1|scaffold_265 (4903-4752) | |
| 275-413, gnl|mm7|chr12 (19634161-19634314) | |
| 275-413, gnl|Mm7|chr12 (19634309-19634171) | |
| 275-413, gnl|monDom2|scaffold_1 (127139332-127139481) | |
| 275-413, gnl|oryCun1|scaffold_173095 (62175-62322) | |
| 275-413, gnl|panTro1|chr12 (10148140-10148289) | |
| 275-413, gnl|rheMac2|chr13 (9507512-9507661) | |
| 275-413, gnl|rn3|chr6 (41836970-41837123) | |
| 275-413, gnl|tetNig1|chr10 (5913163-5913025) | |
| 275-413, gnl|xenTro1|scaffold_86 (70003-69856) | |
| 656-1089, gnl|bosTau2|chr11 (69782655-69782209) | |
| 656-1089, gnl|Hg17|chr2 (9497633-9496696) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 92-204, gnl|bosTau2|chr11 (69790201-69790088) | |
| 92-204, gnl|Hg17|chr2 (9509461-9509341) | |
| 92-204, gnl|Mm7|chr12 (19638910-19638797) | |
| 275-413, gnl|bosTau2|chr11 (69785831-69785693) | |
| 275-413, gnl|canFam2|chr17 (9502102-9502251) | |
| 275-413, gnl|dasNov1|scaffold_29764 (5376-5227) | |
| 275-413, gnl|echTel1|scaffold_286478 (86464-86615) | |
| 275-413, gnl|fr1|chrUn (134375083-134374944) | |
| 275-413, gnl|galGal2|chr3 (94450466-94450612) | |
| 275-413, gnl|hg17|chr2 (9502990-9503139) | |
| 275-413, gnl|Hg17|chr2 (9503134-9502996) | |
| 275-413, gnl|loxAfr1|scaffold_265 (4903-4752) | |
| 275-413, gnl|mm7|chr12 (19634161-19634314) | |
| 275-413, gnl|Mm7|chr12 (19634309-19634171) | |
| 275-413, gnl|monDom2|scaffold_1 (127139332-127139481) | |
| 275-413, gnl|oryCun1|scaffold_173095 (62175-62322) | |
| 275-413, gnl|panTro1|chr12 (10148140-10148289) | |
| 275-413, gnl|rheMac2|chr13 (9507512-9507661) | |
| 275-413, gnl|rn3|chr6 (41836970-41837123) | |
| 275-413, gnl|tetNig1|chr10 (5913163-5913025) | |
| 275-413, gnl|xenTro1|scaffold_86 (70003-69856) | |
| 656-1089, gnl|bosTau2|chr11 (69782655-69782209) | |
| 656-1089, gnl|Hg17|chr2 (9497633-9496696) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| clu (0.239292) | |
| jca (0.22792) | |
| nco (0.161734) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| cty (0.10408) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.239292) | |
| jca (0.22792) | |
| nco (0.161734) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| cty (0.10408) |