Non-Coding RNA Search

Ss1.1-Spl1-SPL010023F12.5

Sequence:


               
               CGGGAAGCGAGAGGCCGGCGGCGGCGGCGGCGGGAGGGCGGCTCGGGCGGCCTGGAAGCC
GGGTCCCGCAGCACCAAGGGGCCGCCAGAGCTTCGGCCAGAGAGTCCTCAGCCGGCCTTT
GAGATGATGGGATTGGGCAACGGGCGTCGGAGCATGAAGTCGCCGCCCCTCGTGCTGGCC
GCCCTGGTGGCCTGTATCATCGTCCTGGGCTTCAACTACTGGATTGCGAGCTCCCGGAGC
GTGGACCTCCAGACGCGGATCGTGGAGCTGGAAGGCAGGGTTCGCAGGGCAGCCGCAGAA
CGCGGGGCCGTGGAGATGAAAAAGAACGAGTTCCAAGGGGAGCTGGAAAAGCAGCGGGAG
CAGCTGGACAAAATCCAGTCCAGCCACAACTTTCAGATGGAGAGCGTCAACAAGCTATAC
CAGGATGAAAAGGCGGTGTTAGTGAATAACATCACCACAGGCGAGAGGCTCATCCGAACC
TTGCAAGACCAGCTAAAGGCCCTAGAGAAGAACTATGGCAGGCTGCAGCAGGATGTCTTC
CAGTTTCAGAAGAATCAGACCAACCTTGAGAGAAAGTTCTCCTACGACCTGAACCAGTGC
ATCAGTCAGATGAAGGAGGTGAAGGAGCAGTGTGAAGAACGCATAGAAGAAGTCACCAAA
AAGGGGAACGAAGCTGCAGCTTCCAGGGACCTGAGTGAACAGAAGGACCCAAGTCAGCAG
CTCCCAGCTCCCAACCAGCCCCAGCCCAGACCGCAGGAAGCAGACCTACCCCAGGCAGGG
GTGTCCCAAGCGAGAGGACGTGCGCCCGGCAACGGTGAGCCCCGGACGCCAGCGCCCAGT
GCTGAGGCGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGAAGCGAGAGGCCGGCGGCGGCGGCGGCGGGAGGGCGGCTCGGGCGGCCTGGAAGCC
GGGTCCCGCAGCACCAAGGGGCCGCCAGAGCTTCGGCCAGAGAGTCCTCAGCCGGCCTTT
GAGATGATGGGATTGGGCAACGGGCGTCGGAGCATGAAGTCGCCGCCCCTCGTGCTGGCC
GCCCTGGTGGCCTGTATCATCGTCCTGGGCTTCAACTACTGGATTGCGAGCTCCCGGAGC
GTGGACCTCCAGACGCGGATCGTGGAGCTGGAAGGCAGGGTTCGCAGGGCAGCCGCAGAA
CGCGGGGCCGTGGAGATGAAAAAGAACGAGTTCCAAGGGGAGCTGGAAAAGCAGCGGGAG
CAGCTGGACAAAATCCAGTCCAGCCACAACTTTCAGATGGAGAGCGTCAACAAGCTATAC
CAGGATGAAAAGGCGGTGTTAGTGAATAACATCACCACAGGCGAGAGGCTCATCCGAACC
TTGCAAGACCAGCTAAAGGCCCTAGAGAAGAACTATGGCAGGCTGCAGCAGGATGTCTTC
CAGTTTCAGAAGAATCAGACCAACCTTGAGAGAAAGTTCTCCTACGACCTGAACCAGTGC
ATCAGTCAGATGAAGGAGGTGAAGGAGCAGTGTGAAGAACGCATAGAAGAAGTCACCAAA
AAGGGGAACGAAGCTGCAGCTTCCAGGGACCTGAGTGAACAGAAGGACCCAAGTCAGCAG
CTCCCAGCTCCCAACCAGCCCCAGCCCAGACCGCAGGAAGCAGACCTACCCCAGGCAGGG
GTGTCCCAAGCGAGAGGACGTGCGCCCGGCAACGGTGAGCCCCGGACGCCAGCGCCCAGT
GCTGAGGCGGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|37182308|gb|AAQ88956.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37182308|gb|AAQ88956.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               281-434, + strand, RNAz p=0.767334

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-434, + strand, RNAz p=0.767334

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               241-434, gnl|bosTau2|chr24 (26249423-26249230)
               

               
               241-434, gnl|canFam2|chr1 (76670523-76670710)
               

               
               241-434, gnl|dasNov1|scaffold_90752 (39539-39721)
               

               
               241-434, gnl|echTel1|scaffold_298263 (6240-6071)
               

               
               241-434, gnl|hg17|chr17 (31469736-31469927)
               

               
               241-434, gnl|Hg17|chr9 (85922072-85921879)
               

               
               241-434, gnl|loxAfr1|scaffold_28137 (5732-5545)
               

               
               241-434, gnl|mm7|chr13 (58772791-58772623)
               

               
               241-434, gnl|Mm7|chr13 (58772814-58772621)
               

               
               241-434, gnl|oryCun1|scaffold_121540 (2634-2826)
               

               
               241-434, gnl|panTro1|chr19 (34999687-34999882)
               

               
               241-434, gnl|rheMac2|chr16 (31406958-31407147)
               

               
               241-434, gnl|rn3|chr17 (10912599-10912767)
               


               
               447-758, gnl|bosTau2|chr10 (46142092-46142404)
               

               
               447-758, gnl|Hg17|chr14 (52407930-52408231)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               241-434, gnl|bosTau2|chr24 (26249423-26249230)
               

               
               241-434, gnl|canFam2|chr1 (76670523-76670710)
               

               
               241-434, gnl|dasNov1|scaffold_90752 (39539-39721)
               

               
               241-434, gnl|echTel1|scaffold_298263 (6240-6071)
               

               
               241-434, gnl|hg17|chr17 (31469736-31469927)
               

               
               241-434, gnl|Hg17|chr9 (85922072-85921879)
               

               
               241-434, gnl|loxAfr1|scaffold_28137 (5732-5545)
               

               
               241-434, gnl|mm7|chr13 (58772791-58772623)
               

               
               241-434, gnl|Mm7|chr13 (58772814-58772621)
               

               
               241-434, gnl|oryCun1|scaffold_121540 (2634-2826)
               

               
               241-434, gnl|panTro1|chr19 (34999687-34999882)
               

               
               241-434, gnl|rheMac2|chr16 (31406958-31407147)
               

               
               241-434, gnl|rn3|chr17 (10912599-10912767)
               


               
               447-758, gnl|bosTau2|chr10 (46142092-46142404)
               

               
               447-758, gnl|Hg17|chr14 (52407930-52408231)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	241-434, gnl\|bosTau2\|chr24 (26249423-26249230)
	241-434, gnl\|canFam2\|chr1 (76670523-76670710)
	241-434, gnl\|dasNov1\|scaffold_90752 (39539-39721)
	241-434, gnl\|echTel1\|scaffold_298263 (6240-6071)
	241-434, gnl\|hg17\|chr17 (31469736-31469927)
	241-434, gnl\|Hg17\|chr9 (85922072-85921879)
	241-434, gnl\|loxAfr1\|scaffold_28137 (5732-5545)
	241-434, gnl\|mm7\|chr13 (58772791-58772623)
	241-434, gnl\|Mm7\|chr13 (58772814-58772621)
	241-434, gnl\|oryCun1\|scaffold_121540 (2634-2826)
	241-434, gnl\|panTro1\|chr19 (34999687-34999882)
	241-434, gnl\|rheMac2\|chr16 (31406958-31407147)
	241-434, gnl\|rn3\|chr17 (10912599-10912767)

	447-758, gnl\|bosTau2\|chr10 (46142092-46142404)
	447-758, gnl\|Hg17\|chr14 (52407930-52408231)