Non-Coding RNA Search

Ss1.1-Spl1-SPL010024E02.5

Sequence:


               
               CTTCAGTAATGTCTTTGTGGCCAGTCAACTGGAGAGTGTGGTGTATGCATCATGGAGCCG
GGTTCAGGCTGACCTCAACTGCATGCAGGACCTCTACCAGATGAATGCAGACTGGAAGTA
CTTGATAAATCTCTGCGGTATGGATTTCCCTATTAAAACCAACCTGGAAATTGTCAGGAT
GCTCAAGCTGCTAAAGGGTGGGAGCAACCTTGAAACTGAAAGAATGCCATCCAACAAAAA
AGAACGGTGGAAAAAACATTACACAGTTGTGAATGGAAAGCTGACAAACATGGGGACCGA
CAAAACACATCCTCCTCTTGAGACCCCTTTGTTTTCAGGCAGTGCCTATTTCGTGGTCAG
TAGGAGTTATGTGGAGTATGTGCTGGAGAATGAAAAAATCCAGAAGTTTATGGAGTGGGC
AAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACTATTCAAAGGATCCCAGGAGT
CCCAGGCTCACTGTCCTTAAGCCACAAGTACGACATGTCTGACATGCATTCGATTGCAAG
GTTTGTCAAGTGGCAGTACTTTGAAGGCGACGTTTCCAAGGGCGCCCCCTACCCACCGTG
CAGCGGCATCCACGTGCGCTCTGTGTGCGTTTTCGGAGCCGGTGACTTGAACTGGCTGCT
GCGCACACATCACTTGTTTGCCAACAAGTTCGACACAGACATCGACCTCTTCGCCATCCA
GTGTTTGGACGAGCATCTGAGACATAAAGCACTGGAGGCGTTAAAACACTGACCGTTGTT
GTATGTGATTTTAGAAATAACCAGGCTGCATGAGATGTACCACATTTGATTCCTTTGCCT
ACAGAATCAAGCTCTCCATGCTAGGGAAGCTATAGAGTTTCTGCAGAGCACGGTGTGTTA
GAAAGGTAGTAGCCCTAAGCCTTGACTTAGAACTAATGAATGCCCAGGGCAGGTTGCAAG
GCATTGTGGGGAGAGGTGCCCCAAGTGGCTGGAGAAAAGGCTAAATGCCCTCTAGCTTGT
TAAAAGCGCTCAGGGACTTAACAAAACCCTAAGATTTGACCTGTGCCAAAATTACTTGGA
GAGCTTTCAATATTATGGTTTTCCAGATTTTAATAAATTTTTACCAACAACCAATAGTAA
GGATGTAATTTATCTTGTAGGTTGTGTCTGTTGAAAGAGAAGTTTGACTTTAAATGATCT
TTGTAAGTGATGTACTTTCTGCTGTAACATTGCTCTGTGTCCTGTATCTGTATATGCTAT
CTCAGGGAACTTGAAAAAATGGGCTTGATTGAATGTATTTCTCATTTTTGCTTTTAACAA
TGTACGTGTATTTTTAAAAGCAAAAAAGAGAGACAGTTCCTAGTTTAGTTGATTCTACGA
GTCATCTAAATCATCTTAGGTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCAGTAATGTCTTTGTGGCCAGTCAACTGGAGAGTGTGGTGTATGCATCATGGAGCCG
GGTTCAGGCTGACCTCAACTGCATGCAGGACCTCTACCAGATGAATGCAGACTGGAAGTA
CTTGATAAATCTCTGCGGTATGGATTTCCCTATTAAAACCAACCTGGAAATTGTCAGGAT
GCTCAAGCTGCTAAAGGGTGGGAGCAACCTTGAAACTGAAAGAATGCCATCCAACAAAAA
AGAACGGTGGAAAAAACATTACACAGTTGTGAATGGAAAGCTGACAAACATGGGGACCGA
CAAAACACATCCTCCTCTTGAGACCCCTTTGTTTTCAGGCAGTGCCTATTTCGTGGTCAG
TAGGAGTTATGTGGAGTATGTGCTGGAGAATGAAAAAATCCAGAAGTTTATGGAGTGGGC
AAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACTATTCAAAGGATCCCAGGAGT
CCCAGGCTCACTGTCCTTAAGCCACAAGTACGACATGTCTGACATGCATTCGATTGCAAG
GTTTGTCAAGTGGCAGTACTTTGAAGGCGACGTTTCCAAGGGCGCCCCCTACCCACCGTG
CAGCGGCATCCACGTGCGCTCTGTGTGCGTTTTCGGAGCCGGTGACTTGAACTGGCTGCT
GCGCACACATCACTTGTTTGCCAACAAGTTCGACACAGACATCGACCTCTTCGCCATCCA
GTGTTTGGACGAGCATCTGAGACATAAAGCACTGGAGGCGTTAAAACACTGACCGTTGTT
GTATGTGATTTTAGAAATAACCAGGCTGCATGAGATGTACCACATTTGATTCCTTTGCCT
ACAGAATCAAGCTCTCCATGCTAGGGAAGCTATAGAGTTTCTGCAGAGCACGGTGTGTTA
GAAAGGTAGTAGCCCTAAGCCTTGACTTAGAACTAATGAATGCCCAGGGCAGGTTGCAAG
GCATTGTGGGGAGAGGTGCCCCAAGTGGCTGGAGAAAAGGCTAAATGCCCTCTAGCTTGT
TAAAAGCGCTCAGGGACTTAACAAAACCCTAAGATTTGACCTGTGCCAAAATTACTTGGA
GAGCTTTCAATATTATGGTTTTCCAGATTTTAATAAATTTTTACCAACAACCAATAGTAA
GGATGTAATTTATCTTGTAGGTTGTGTCTGTTGAAAGAGAAGTTTGACTTTAAATGATCT
TTGTAAGTGATGTACTTTCTGCTGTAACATTGCTCTGTGTCCTGTATCTGTATATGCTAT
CTCAGGGAACTTGAAAAAATGGGCTTGATTGAATGTATTTCTCATTTTTGCTTTTAACAA
TGTACGTGTATTTTTAAAAGCAAAAAAGAGAGACAGTTCCTAGTTTAGTTGATTCTACGA
GTCATCTAAATCATCTTAGGTTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57036797|ref|XP_541274.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57036797|ref|XP_541274.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               358-477, + strand, RNAz p=0.709882
               

               
               910-1007, - strand, RNAz p=0.591973

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-477, + strand, RNAz p=0.709882
               

               
               910-1007, - strand, RNAz p=0.591973

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1345, gnl|bosTau2|chr8 (24538984-24537630)
               

               
               1-1345, gnl|Hg17|chr9 (76347367-76348785)
               

               
               1-1345, gnl|Mm7|chr19 (17030772-17029393)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1345, gnl|bosTau2|chr8 (24538984-24537630)
               

               
               1-1345, gnl|Hg17|chr9 (76347367-76348785)
               

               
               1-1345, gnl|Mm7|chr19 (17030772-17029393)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nca (0.273748)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nmm (0.132802)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nmm (0.132802)

	358-477, + strand, RNAz p=0.709882
	910-1007, - strand, RNAz p=0.591973

	1-1345, gnl\|bosTau2\|chr8 (24538984-24537630)
	1-1345, gnl\|Hg17\|chr9 (76347367-76348785)
	1-1345, gnl\|Mm7\|chr19 (17030772-17029393)