Non-Coding RNA Search

Ss1.1-Spl1-SPL010024H08.5

Sequence:


               
               TGGGTGCTGCCTAAGTTCTCACAGGACAGACCCTGTCATGCAAGCTTAGGCCTGCATTCC
TGTTGCTGTCTAGATAGGACTAATCACAGCGATTAGTGCCAAGTGCCAAGTGTTCTATCC
CCTGACGTCAGGTTCTGGATGCCGCTCTGACTTATTCTGCAGATAATTTTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCAGGGGAGTTGAGGAC
GGGAGGGGACGCAGGGCTTGGGACACAGGCAGGGTGGGAAATGCTAAGCATTTCTGATCC
CCATCCGCCACGATCCTAGCCTGGTTTTGTGTGTTGGTGAACACCGAAGTCCCTCCCGGC
CTCGGGACTGGAGGTTTTTGAAGCCAAAGGTGTTGTCGTTTTCCATGTATTATTATCTTT
TCATTCATCCACTCTGTGCCTTGTCAGCCTTTGAAAGTCTTGGTTGCGCCCAGGCTGCTG
TTCTCAGGGACCTTACAAGGGACCTGGTTGGTCTTGGGGCAGAGAGTGTCTTCTAGGATA
CTCTTCCAAGAGAGACCTTGTCTCCATTTCCATGAGAGAATGCTGCTTGCACGTGTTCGG
GAGGCTCTTCTAAACGGGATGTGCGTGCCACCGTTTCCTAGGCGAGGGGCTGCCGTTAGA
CCAGAGGACCACGCCTGGTGGGCCAATCATGTGCTTCACCGCTGTGCCTTAGACTCCCCC
AGGGCAGGTGGACCCTCAGGGCAGAGGGGCAAGCAGATCCCAGATCCCAGCAATCCCATG
GGTTGGGCAGCCTGTCTGGAGCCTTCCTCGGGACCCTCATCTCCATCCGCATCTCCACGA
GCACTGACCCAGAGCTCTTTGATTGTGACACCACGCCGGTCATTATAAACCTTGATGGGC
TGGCCCTGGCCTGTGACTTCACAATCCACGATGAAGAACTGTGATGCCAATAAGATCTAA
AGAGAGTTTAGCAATGATGTAAGTGGGGACTAAATACAGAATGTCTTTGAATAAATACCT
GTGTAACTCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTGCTGCCTAAGTTCTCACAGGACAGACCCTGTCATGCAAGCTTAGGCCTGCATTCC
TGTTGCTGTCTAGATAGGACTAATCACAGCGATTAGTGCCAAGTGCCAAGTGTTCTATCC
CCTGACGTCAGGTTCTGGATGCCGCTCTGACTTATTCTGCAGATAATTTTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCAGGGGAGTTGAGGAC
GGGAGGGGACGCAGGGCTTGGGACACAGGCAGGGTGGGAAATGCTAAGCATTTCTGATCC
CCATCCGCCACGATCCTAGCCTGGTTTTGTGTGTTGGTGAACACCGAAGTCCCTCCCGGC
CTCGGGACTGGAGGTTTTTGAAGCCAAAGGTGTTGTCGTTTTCCATGTATTATTATCTTT
TCATTCATCCACTCTGTGCCTTGTCAGCCTTTGAAAGTCTTGGTTGCGCCCAGGCTGCTG
TTCTCAGGGACCTTACAAGGGACCTGGTTGGTCTTGGGGCAGAGAGTGTCTTCTAGGATA
CTCTTCCAAGAGAGACCTTGTCTCCATTTCCATGAGAGAATGCTGCTTGCACGTGTTCGG
GAGGCTCTTCTAAACGGGATGTGCGTGCCACCGTTTCCTAGGCGAGGGGCTGCCGTTAGA
CCAGAGGACCACGCCTGGTGGGCCAATCATGTGCTTCACCGCTGTGCCTTAGACTCCCCC
AGGGCAGGTGGACCCTCAGGGCAGAGGGGCAAGCAGATCCCAGATCCCAGCAATCCCATG
GGTTGGGCAGCCTGTCTGGAGCCTTCCTCGGGACCCTCATCTCCATCCGCATCTCCACGA
GCACTGACCCAGAGCTCTTTGATTGTGACACCACGCCGGTCATTATAAACCTTGATGGGC
TGGCCCTGGCCTGTGACTTCACAATCCACGATGAAGAACTGTGATGCCAATAAGATCTAA
AGAGAGTTTAGCAATGATGTAAGTGGGGACTAAATACAGAATGTCTTTGAATAAATACCT
GTGTAACTCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               418-613, - strand, RNAz p=0.991203

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               418-613, - strand, RNAz p=0.991203

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               525-592, + strand, RNAmicro p=0.999985

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               525-592, + strand, RNAmicro p=0.999985

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-198, gnl|bosTau2|chr25 (19437327-19437129)
               

               
               1-198, gnl|canFam2|chr6 (25365483-25365194)
               

               
               1-198, gnl|dasNov1|scaffold_45471 (558-283)
               

               
               1-198, gnl|echTel1|scaffold_291305 (16463-16697)
               

               
               1-198, gnl|hg17|chr16 (23386117-23386407)
               

               
               1-198, gnl|Hg17|chr16 (23386425-23386212)
               

               
               1-198, gnl|loxAfr1|scaffold_6539 (6905-6659)
               

               
               1-198, gnl|mm7|chr7 (117913698-117913953)
               

               
               1-198, gnl|Mm7|chr7 (117913969-117913795)
               

               
               1-198, gnl|monDom2|scaffold_17 (43608828-43608594)
               

               
               1-198, gnl|oryCun1|scaffold_173701 (120790-120508)
               

               
               1-198, gnl|panTro1|chr18 (24003206-24003575)
               

               
               1-198, gnl|rn3|chr1 (180955946-180956200)
               


               
               204-1027, gnl|bosTau2|chr25 (19437163-19436325)
               

               
               204-1027, gnl|Hg17|chr16 (23386246-23385419)
               

               
               204-1027, gnl|Mm7|chr7 (117913832-117913033)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-198, gnl|bosTau2|chr25 (19437327-19437129)
               

               
               1-198, gnl|canFam2|chr6 (25365483-25365194)
               

               
               1-198, gnl|dasNov1|scaffold_45471 (558-283)
               

               
               1-198, gnl|echTel1|scaffold_291305 (16463-16697)
               

               
               1-198, gnl|hg17|chr16 (23386117-23386407)
               

               
               1-198, gnl|Hg17|chr16 (23386425-23386212)
               

               
               1-198, gnl|loxAfr1|scaffold_6539 (6905-6659)
               

               
               1-198, gnl|mm7|chr7 (117913698-117913953)
               

               
               1-198, gnl|Mm7|chr7 (117913969-117913795)
               

               
               1-198, gnl|monDom2|scaffold_17 (43608828-43608594)
               

               
               1-198, gnl|oryCun1|scaffold_173701 (120790-120508)
               

               
               1-198, gnl|panTro1|chr18 (24003206-24003575)
               

               
               1-198, gnl|rn3|chr1 (180955946-180956200)
               


               
               204-1027, gnl|bosTau2|chr25 (19437163-19436325)
               

               
               204-1027, gnl|Hg17|chr16 (23386246-23385419)
               

               
               204-1027, gnl|Mm7|chr7 (117913832-117913033)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cje (0.330469)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

	1-198, gnl\|bosTau2\|chr25 (19437327-19437129)
	1-198, gnl\|canFam2\|chr6 (25365483-25365194)
	1-198, gnl\|dasNov1\|scaffold_45471 (558-283)
	1-198, gnl\|echTel1\|scaffold_291305 (16463-16697)
	1-198, gnl\|hg17\|chr16 (23386117-23386407)
	1-198, gnl\|Hg17\|chr16 (23386425-23386212)
	1-198, gnl\|loxAfr1\|scaffold_6539 (6905-6659)
	1-198, gnl\|mm7\|chr7 (117913698-117913953)
	1-198, gnl\|Mm7\|chr7 (117913969-117913795)
	1-198, gnl\|monDom2\|scaffold_17 (43608828-43608594)
	1-198, gnl\|oryCun1\|scaffold_173701 (120790-120508)
	1-198, gnl\|panTro1\|chr18 (24003206-24003575)
	1-198, gnl\|rn3\|chr1 (180955946-180956200)

	204-1027, gnl\|bosTau2\|chr25 (19437163-19436325)
	204-1027, gnl\|Hg17\|chr16 (23386246-23385419)
	204-1027, gnl\|Mm7\|chr7 (117913832-117913033)

	cje (0.330469)
	fcc (0.197785)
	fty (0.17584)
	hyp (0.142837)
	ssp (0.13552)
	ese (0.126502)
	cly (0.120642)
	pgl (0.118483)