Ss1.1-Spl1-SPL010025G10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCTGCGGAGGGGACTGTCCCAGGAAGTCCTGGGTGGGTAGGCGTCGCACCCGGAAGTT AAGCGGCTCCGCGACGGAGCGGCAGTGCGAGCGGCAGAGCCCCGAGTATCCCATTTTTTT CGGGAGGAAACCACCGCATCGGGTCGGCGCTGCGGGCTGCAGCCACCGGCCTGGTTGACC ATGGCCCTTTCTGTGGAGACTGAGTCGCACATATACCGAACTCTGCGCACTGCCTCTGGG GCTGCTGCCCACCTTGTGGCCCTGGGCTTCACCATCTTTGTGGCTGTACTTGCCAGGCCT GGCTCCAGTCTCTTCTCCTGGCACCCCGTGCTTATGTGTCTGGCTTTCTCTTTCCTGATG ACAGAGGCACTGCTGGTATTCTCTCCTGAGAGTTCGCTGCTGCGCTCCCTGTCGCGGAAG GGCCGAGCACGCTGTCACTGGGTACTGCAGCTGCTGGCCCTGTTGTGTGCACTGCTGGGC CTGGGCCTTGTCATTCTCCATAAGGAACAACTCGGCAAAGCCCACCTGGCCACATGGCAT GGGCGGGCAGGACTGCTAGCTGTGCTGTGGGCAGGGCTGCAGTGCTCAGGTGGGGTGGGG CTGCTCTACCCCAAACTGTTGCCCCGTTGGCCCCTGGCCAAGCTCAAGCTGTACCATGCC ACTTCTGGGCTGGTGGGCTACCTCCTGGGTAGTGCCAGCCTCTTGTTGGGCATGTGTTCA CTGTGGTTCACCGCCACAGTCACTGGTGGGGTCTGGTACCTGGCTGTGCTATGCCCTGTG ATTACCAGCTTAGTCATCATGAACCAGGTGAGCAACGCCTACCTGTACCGCAAAAGGATC CAGCCATGAGCTCTTCCCAGCCTAGGGGAAGCCTGGATTTGCCCCTCAGTGTGCTAACTG AGGCTGAGACCTTCTGACTCTTCTCCGCTGACTCAGTCATGGGACACCTCAGGCATTAGG GCCATCAAGGGTAGCCAGAGTCCTGCGTGTGTGACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCTGCGGAGGGGACTGTCCCAGGAAGTCCTGGGTGGGTAGGCGTCGCACCCGGAAGTT AAGCGGCTCCGCGACGGAGCGGCAGTGCGAGCGGCAGAGCCCCGAGTATCCCATTTTTTT CGGGAGGAAACCACCGCATCGGGTCGGCGCTGCGGGCTGCAGCCACCGGCCTGGTTGACC ATGGCCCTTTCTGTGGAGACTGAGTCGCACATATACCGAACTCTGCGCACTGCCTCTGGG GCTGCTGCCCACCTTGTGGCCCTGGGCTTCACCATCTTTGTGGCTGTACTTGCCAGGCCT GGCTCCAGTCTCTTCTCCTGGCACCCCGTGCTTATGTGTCTGGCTTTCTCTTTCCTGATG ACAGAGGCACTGCTGGTATTCTCTCCTGAGAGTTCGCTGCTGCGCTCCCTGTCGCGGAAG GGCCGAGCACGCTGTCACTGGGTACTGCAGCTGCTGGCCCTGTTGTGTGCACTGCTGGGC CTGGGCCTTGTCATTCTCCATAAGGAACAACTCGGCAAAGCCCACCTGGCCACATGGCAT GGGCGGGCAGGACTGCTAGCTGTGCTGTGGGCAGGGCTGCAGTGCTCAGGTGGGGTGGGG CTGCTCTACCCCAAACTGTTGCCCCGTTGGCCCCTGGCCAAGCTCAAGCTGTACCATGCC ACTTCTGGGCTGGTGGGCTACCTCCTGGGTAGTGCCAGCCTCTTGTTGGGCATGTGTTCA CTGTGGTTCACCGCCACAGTCACTGGTGGGGTCTGGTACCTGGCTGTGCTATGCCCTGTG ATTACCAGCTTAGTCATCATGAACCAGGTGAGCAACGCCTACCTGTACCGCAAAAGGATC CAGCCATGAGCTCTTCCCAGCCTAGGGGAAGCCTGGATTTGCCCCTCAGTGTGCTAACTG AGGCTGAGACCTTCTGACTCTTCTCCGCTGACTCAGTCATGGGACACCTCAGGCATTAGG GCCATCAAGGGTAGCCAGAGTCCTGCGTGTGTGACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-104, + strand, RNAz p=0.86851 | |
| 465-824, + strand, RNAz p=0.999129 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-104, + strand, RNAz p=0.86851 | |
| 465-824, + strand, RNAz p=0.999129 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_007022, + |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-156, gnl|bosTau2|chr22 (38625687-38625831) | |
| 1-156, gnl|canFam2|chr20 (42005816-42005333) | |
| 1-156, gnl|dasNov1|scaffold_149973 (1558-1092) | |
| 1-156, gnl|echTel1|scaffold_274637 (12166-12628) | |
| 1-156, gnl|hg17|chr3 (50363093-50363577) | |
| 1-156, gnl|Hg17|chr3 (50363252-50363411) | |
| 1-156, gnl|mm7|chr9 (107271820-107271327) | |
| 1-156, gnl|Mm7|chr9 (107271649-107271482) | |
| 1-156, gnl|monDom2|scaffold_5 (73914960-73914408) | |
| 1-156, gnl|oryCun1|scaffold_208515 (38791-38271) | |
| 1-156, gnl|panTro1|chr2 (51942257-51942741) | |
| 1-156, gnl|rheMac2|chr2 (86063870-86063391) | |
| 1-156, gnl|rn3|chr8 (112809250-112808758) | |
| 166-309, gnl|bosTau2|chr22 (38626261-38626404) | |
| 166-309, gnl|canFam2|chr20 (42005162-42004905) | |
| 166-309, gnl|dasNov1|scaffold_149973 (959-750) | |
| 166-309, gnl|echTel1|scaffold_274637 (12792-13045) | |
| 166-309, gnl|hg17|chr3 (50363757-50364014) | |
| 166-309, gnl|Hg17|chr3 (50363851-50363997) | |
| 166-309, gnl|loxAfr1|scaffold_33789 (11276-11019) | |
| 166-309, gnl|mm7|chr9 (107271183-107270928) | |
| 166-309, gnl|Mm7|chr9 (107271086-107270943) | |
| 166-309, gnl|monDom2|scaffold_5 (73914273-73914051) | |
| 166-309, gnl|oryCun1|scaffold_208515 (38092-37837) | |
| 166-309, gnl|panTro1|chr2 (51942921-51943178) | |
| 166-309, gnl|rheMac2|chr2 (86063213-86062956) | |
| 166-309, gnl|rn3|chr8 (112808612-112808362) | |
| 166-309, gnl|xenTro1|scaffold_189 (1559221-1558954) | |
| 346-962, gnl|bosTau2|chr22 (38627870-38628482) | |
| 346-962, gnl|Hg17|chr3 (50365676-50366289) | |
| 346-962, gnl|Mm7|chr9 (107269833-107269216) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-156, gnl|bosTau2|chr22 (38625687-38625831) | |
| 1-156, gnl|canFam2|chr20 (42005816-42005333) | |
| 1-156, gnl|dasNov1|scaffold_149973 (1558-1092) | |
| 1-156, gnl|echTel1|scaffold_274637 (12166-12628) | |
| 1-156, gnl|hg17|chr3 (50363093-50363577) | |
| 1-156, gnl|Hg17|chr3 (50363252-50363411) | |
| 1-156, gnl|mm7|chr9 (107271820-107271327) | |
| 1-156, gnl|Mm7|chr9 (107271649-107271482) | |
| 1-156, gnl|monDom2|scaffold_5 (73914960-73914408) | |
| 1-156, gnl|oryCun1|scaffold_208515 (38791-38271) | |
| 1-156, gnl|panTro1|chr2 (51942257-51942741) | |
| 1-156, gnl|rheMac2|chr2 (86063870-86063391) | |
| 1-156, gnl|rn3|chr8 (112809250-112808758) | |
| 166-309, gnl|bosTau2|chr22 (38626261-38626404) | |
| 166-309, gnl|canFam2|chr20 (42005162-42004905) | |
| 166-309, gnl|dasNov1|scaffold_149973 (959-750) | |
| 166-309, gnl|echTel1|scaffold_274637 (12792-13045) | |
| 166-309, gnl|hg17|chr3 (50363757-50364014) | |
| 166-309, gnl|Hg17|chr3 (50363851-50363997) | |
| 166-309, gnl|loxAfr1|scaffold_33789 (11276-11019) | |
| 166-309, gnl|mm7|chr9 (107271183-107270928) | |
| 166-309, gnl|Mm7|chr9 (107271086-107270943) | |
| 166-309, gnl|monDom2|scaffold_5 (73914273-73914051) | |
| 166-309, gnl|oryCun1|scaffold_208515 (38092-37837) | |
| 166-309, gnl|panTro1|chr2 (51942921-51943178) | |
| 166-309, gnl|rheMac2|chr2 (86063213-86062956) | |
| 166-309, gnl|rn3|chr8 (112808612-112808362) | |
| 166-309, gnl|xenTro1|scaffold_189 (1559221-1558954) | |
| 346-962, gnl|bosTau2|chr22 (38627870-38628482) | |
| 346-962, gnl|Hg17|chr3 (50365676-50366289) | |
| 346-962, gnl|Mm7|chr9 (107269833-107269216) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cov (0.264306) | |
| cbr (0.255951) | |
| csp (0.161186) | |
| cag (0.151194) | |
| pty (0.142714) | |
| pla (0.133672) | |
| cty (0.10408) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.264306) | |
| cbr (0.255951) | |
| csp (0.161186) | |
| cag (0.151194) | |
| pty (0.142714) | |
| pla (0.133672) | |
| cty (0.10408) |