Ss1.1-Spl1-SPL010026E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGCGGGCGCGACGCCCGGAGGGACAAGTCTGGGGTCCAGCTAGAAGGGGAGGTACGGCG GCGGGACCGGCCGGGAAGATGCCAGTGGCGGTGATGGCGGAAAGTGCCTTTAATTTCAAA AAGTTGCTGGATCAGTGCGAGAACCAGGAGCTGGAGGCTCCAGGAGGAATTGCTACACCT CCAGTGTATGGTCAGCTTCTAGCTTTATATCTGCTCCATAATGACATGAATAATGCAAGA TACCTTTGGAAAAGAATACCACCCGCTATAAAGTCGGCAAATTCTGAACTTGGGGGGATT TGGTCAGTGGGACAGAGAATCTGGCAGAGGGATTTCCCTGGCGTCTACAGCACCATCAAC GCCCACCAGTGGTCCGAGACGGTCCAGCCCATCATGGAAGCACTTAGAGATGCTACCCGG AGGCGCGCCTTCGCCCTGGTTTCTCAAGCCTACACCTCCATCGTCGCCGACGACTTCGCA GCCTTCGTCGGCCTGCCTGTGGAGGAAGCTGTGAAAGGGGTGCTGGAGCAGGGGTGGCAG GCTGACTCCTCCACGAGGATGGTGATGCCCAAGAAGCCAGTTGCAGGTGCCCTGGATGTT TCCTTTAACAGATTTATTCCGTTGTCAGAGGCTGCCCCCGTCCCGCCCATCCCCAACGAG CAGCAGTTAGCCCGACTCACCGACTACGTGGCTTTCCTCGAAAACTGACTGACTCCGAGC TCCAGATCCACCACCAGAATCCTGTATACTGACAAATAGAGAAATGTAAGGTTTTTATTT GCAATTTTATTGGCTGGATTGAGCACCTCAGCGTTCCTTACTGAGTATGTGATAAAACAC GTAGAGAAGAATATATATTTTGTCCTTCAACGTTATGCTGAATGGTCGTGGAAACAATTC TTATTTTGTGCTAGTTGACGATTTGGACGGAGCCCGTCAGTGTTAGCAGGGAGTTAGTGT TTCCTAGTGACTCATGAATGAGCTCCCTGCTGCCTGCGGCGCAGCGGCCGTCAGCTGCTT CCTCCCCGGCTCGAGGCACCCTGCGCCTGCACCGCGGGCTGGTGGCTGCACTGATGCACG GCTGTCCCCAGGGGCCTATCTGACTGTCTGGGGACCCTGACTCCCCCTCCTCGGGGCTGT GCTCTTCCCCCTCCCTGCTGAGAATCAGCCATCAAAATGCTGAGCTAGAGCTAAGAACAA AAGACCCGTTTCCGTAGTAAACCGCTTTGTTAGCTTTAGGTTGTTTGCCGTTTTTGAGAG TGTGAGTACATCCATTGCTGGCAGTGGAGGGCTTGCCGTGGAGATGGACTTATTAAGACC TTCACGAGAAGCATGAAGTTGCCGCGTTTCCTTTCGGAAGGAGACTGTGGAGTGCGTTAC TTGAGACAGAAGCTGTTGAGTGATCCACTTTGTCCAGCTACCCTGCAGCCCGTTGGTTGC TTGTATTTATCCCTTGGGTCAAGTTCTGCCTTTTGAGAAATACTGTACAAGGCTTTCATT TTTTGTGTGACAGCCTCTGATGTTTGAAGCTGTTCCTTGTATCTTCAGGGTAAAGCTACC CCCTAGTTCATTTATTCTGCATTTGTTCAATAAATAATTAATTGAATTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGCGGGCGCGACGCCCGGAGGGACAAGTCTGGGGTCCAGCTAGAAGGGGAGGTACGGCG GCGGGACCGGCCGGGAAGATGCCAGTGGCGGTGATGGCGGAAAGTGCCTTTAATTTCAAA AAGTTGCTGGATCAGTGCGAGAACCAGGAGCTGGAGGCTCCAGGAGGAATTGCTACACCT CCAGTGTATGGTCAGCTTCTAGCTTTATATCTGCTCCATAATGACATGAATAATGCAAGA TACCTTTGGAAAAGAATACCACCCGCTATAAAGTCGGCAAATTCTGAACTTGGGGGGATT TGGTCAGTGGGACAGAGAATCTGGCAGAGGGATTTCCCTGGCGTCTACAGCACCATCAAC GCCCACCAGTGGTCCGAGACGGTCCAGCCCATCATGGAAGCACTTAGAGATGCTACCCGG AGGCGCGCCTTCGCCCTGGTTTCTCAAGCCTACACCTCCATCGTCGCCGACGACTTCGCA GCCTTCGTCGGCCTGCCTGTGGAGGAAGCTGTGAAAGGGGTGCTGGAGCAGGGGTGGCAG GCTGACTCCTCCACGAGGATGGTGATGCCCAAGAAGCCAGTTGCAGGTGCCCTGGATGTT TCCTTTAACAGATTTATTCCGTTGTCAGAGGCTGCCCCCGTCCCGCCCATCCCCAACGAG CAGCAGTTAGCCCGACTCACCGACTACGTGGCTTTCCTCGAAAACTGACTGACTCCGAGC TCCAGATCCACCACCAGAATCCTGTATACTGACAAATAGAGAAATGTAAGGTTTTTATTT GCAATTTTATTGGCTGGATTGAGCACCTCAGCGTTCCTTACTGAGTATGTGATAAAACAC GTAGAGAAGAATATATATTTTGTCCTTCAACGTTATGCTGAATGGTCGTGGAAACAATTC TTATTTTGTGCTAGTTGACGATTTGGACGGAGCCCGTCAGTGTTAGCAGGGAGTTAGTGT TTCCTAGTGACTCATGAATGAGCTCCCTGCTGCCTGCGGCGCAGCGGCCGTCAGCTGCTT CCTCCCCGGCTCGAGGCACCCTGCGCCTGCACCGCGGGCTGGTGGCTGCACTGATGCACG GCTGTCCCCAGGGGCCTATCTGACTGTCTGGGGACCCTGACTCCCCCTCCTCGGGGCTGT GCTCTTCCCCCTCCCTGCTGAGAATCAGCCATCAAAATGCTGAGCTAGAGCTAAGAACAA AAGACCCGTTTCCGTAGTAAACCGCTTTGTTAGCTTTAGGTTGTTTGCCGTTTTTGAGAG TGTGAGTACATCCATTGCTGGCAGTGGAGGGCTTGCCGTGGAGATGGACTTATTAAGACC TTCACGAGAAGCATGAAGTTGCCGCGTTTCCTTTCGGAAGGAGACTGTGGAGTGCGTTAC TTGAGACAGAAGCTGTTGAGTGATCCACTTTGTCCAGCTACCCTGCAGCCCGTTGGTTGC TTGTATTTATCCCTTGGGTCAAGTTCTGCCTTTTGAGAAATACTGTACAAGGCTTTCATT TTTTGTGTGACAGCCTCTGATGTTTGAAGCTGTTCCTTGTATCTTCAGGGTAAAGCTACC CCCTAGTTCATTTATTCTGCATTTGTTCAATAAATAATTAATTGAATTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-157, gnl|bosTau2|chr3 (83609171-83609326) | |
| 1-157, gnl|Hg17|chr2 (237776533-237776686) | |
| 1-157, gnl|Mm7|chr1 (90507484-90507638) | |
| 276-409, gnl|bosTau2|chr3 (83613665-83613798) | |
| 276-409, gnl|canFam2|chr25 (50809906-50810070) | |
| 276-409, gnl|danRer3|chr16 (20310807-20310657) | |
| 276-409, gnl|dasNov1|scaffold_17969 (15228-15069) | |
| 276-409, gnl|echTel1|scaffold_311547 (46777-46632) | |
| 276-409, gnl|fr1|chrUn (228880403-228880257) | |
| 276-409, gnl|galGal2|chr7 (4855590-4855410) | |
| 276-409, gnl|hg17|chr2 (237780496-237780660) | |
| 276-409, gnl|Hg17|chr2 (237780504-237780637) | |
| 276-409, gnl|loxAfr1|scaffold_9216 (43163-43004) | |
| 276-409, gnl|mm7|chr1 (90510538-90510700) | |
| 276-409, gnl|Mm7|chr1 (90510546-90510679) | |
| 276-409, gnl|monDom2|scaffold_161 (406048-405884) | |
| 276-409, gnl|oryCun1|scaffold_116500 (8189-8349) | |
| 276-409, gnl|panTro1|chr13 (128719897-128720061) | |
| 276-409, gnl|rheMac2|chr12 (100943310-100943474) | |
| 276-409, gnl|rn3|chr9 (90010430-90010594) | |
| 276-409, gnl|tetNig1|chr2 (18626438-18626292) | |
| 276-409, gnl|xenTro1|scaffold_49 (2306035-2306200) | |
| 626-1608, gnl|bosTau2|chr3 (83621132-83622146) | |
| 626-1608, gnl|Hg17|chr2 (237788303-237789330) | |
| 626-1608, gnl|Mm7|chr1 (90516181-90517119) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-157, gnl|bosTau2|chr3 (83609171-83609326) | |
| 1-157, gnl|Hg17|chr2 (237776533-237776686) | |
| 1-157, gnl|Mm7|chr1 (90507484-90507638) | |
| 276-409, gnl|bosTau2|chr3 (83613665-83613798) | |
| 276-409, gnl|canFam2|chr25 (50809906-50810070) | |
| 276-409, gnl|danRer3|chr16 (20310807-20310657) | |
| 276-409, gnl|dasNov1|scaffold_17969 (15228-15069) | |
| 276-409, gnl|echTel1|scaffold_311547 (46777-46632) | |
| 276-409, gnl|fr1|chrUn (228880403-228880257) | |
| 276-409, gnl|galGal2|chr7 (4855590-4855410) | |
| 276-409, gnl|hg17|chr2 (237780496-237780660) | |
| 276-409, gnl|Hg17|chr2 (237780504-237780637) | |
| 276-409, gnl|loxAfr1|scaffold_9216 (43163-43004) | |
| 276-409, gnl|mm7|chr1 (90510538-90510700) | |
| 276-409, gnl|Mm7|chr1 (90510546-90510679) | |
| 276-409, gnl|monDom2|scaffold_161 (406048-405884) | |
| 276-409, gnl|oryCun1|scaffold_116500 (8189-8349) | |
| 276-409, gnl|panTro1|chr13 (128719897-128720061) | |
| 276-409, gnl|rheMac2|chr12 (100943310-100943474) | |
| 276-409, gnl|rn3|chr9 (90010430-90010594) | |
| 276-409, gnl|tetNig1|chr2 (18626438-18626292) | |
| 276-409, gnl|xenTro1|scaffold_49 (2306035-2306200) | |
| 626-1608, gnl|bosTau2|chr3 (83621132-83622146) | |
| 626-1608, gnl|Hg17|chr2 (237788303-237789330) | |
| 626-1608, gnl|Mm7|chr1 (90516181-90517119) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| sme (0.91631) | |
| cst (0.420109) | |
| fty (0.351679) | |
| med (0.348756) | |
| vin (0.332557) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| mas (0.210305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.91631) | |
| cst (0.420109) | |
| fty (0.351679) | |
| med (0.348756) | |
| vin (0.332557) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| mas (0.210305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| ldo (0.0970026) |