Non-Coding RNA Search

Ss1.1-Spl1-SPL010026E11.5

Sequence:


               
               GCGGGGGACCGGCCCCGCTAAAAGGGGAACTCGCAGACATAGTACAAGCGCCGCTCGCAC
TCGTGGTCCCACCAGGAGCCGTCGTCCGATGCCTGGGCCACGCAGTTCTCCAGCGCGCCG
CCGTTGGGCTGATTGGGGCTGAGTGGGTGCGGCGCGGCGCTGGGCCCTGCCCGGGGCTCG
GGGCTGGGCACACGGTGCCAGGCAAAGAAGGACACACGCTGGCCGTTCTCGAAGAGGTAG
AGGCCCTCGGCGCGCCGATCGTGCACACCCAGCCACACCGGCCAGTTGTAGGGGGCGAGC
GCCGAGCGAAGGTAGCGGGTGAGCACTTCCATCTGCTGGCGGTCCGCGGGCTGCGCCAGG
CTCCCGCCTCGTGCCGTGCACCGCGCCTGCGCAGCCGCCTGCGCCTCGAAGTCGCGCGAG
AGCAGGAAGCACTTGTGGCCAAGGCGCACCCCCTTCAGGCAGCCCTCTAAGCGGCCGTGC
TCGCGCTCAGCGCGGCTCTGCGCCTCCTGCAGGGTTTGCAAGGCGTCGCGGGTGTCGCCC
GCCACCTCCCGCAGCTGCCGCAGCCCCCGAGTCAGCTCGGCCACGCGGGTGTCCAACGCG
TGCAAACGGACGTGTACTTGGTGCAGGCCTGCGTCCAGGCCGGCAAGGCGGCCCAAGATA
TAAGTGACAGTGTCCTCAGGGGTGGGAGAGGGGCTGGGTCTGGAGGAAGGGGTTCGTGTT
GGTTCCTCCTCTCCTTCCTCTTCCCCCTGAGCATCGTTCTCAGTCACTCGGGCCCCTTCG
CCTGTAGGGGTTCCCTGGGGATTTTCGTCCCCCCTCGGCGCAGGCAGCCCCAGGGCTTCC
TGTAAATGCTTGAGCATGAGGGCCTCCCTCTCCCGCTCCTCCTCCTGGGCGCCACCCCAG
ACCCCCTCCCACTCCCTCTCAGCTCCCCGAGCCCCATGACTGAAGCTCAGGAGCTGGGGT
ACCACCAGGGCCCCGAGGAGCCAGGCTGCCTGCATCAGGCTGGGCTCGGAGCACCCAAGG
CTGCAGAAGGGTATCTCGGAGGAGAATGGTGTCTCGGTGGACTGGAGCGTGTGCAGATTA
CCCAGCCTCCTGGTCCCCGCCTCTTCCAGCTTCTGTCTGGTCCCTCTCCTCCCAACTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGGGACCGGCCCCGCTAAAAGGGGAACTCGCAGACATAGTACAAGCGCCGCTCGCAC
TCGTGGTCCCACCAGGAGCCGTCGTCCGATGCCTGGGCCACGCAGTTCTCCAGCGCGCCG
CCGTTGGGCTGATTGGGGCTGAGTGGGTGCGGCGCGGCGCTGGGCCCTGCCCGGGGCTCG
GGGCTGGGCACACGGTGCCAGGCAAAGAAGGACACACGCTGGCCGTTCTCGAAGAGGTAG
AGGCCCTCGGCGCGCCGATCGTGCACACCCAGCCACACCGGCCAGTTGTAGGGGGCGAGC
GCCGAGCGAAGGTAGCGGGTGAGCACTTCCATCTGCTGGCGGTCCGCGGGCTGCGCCAGG
CTCCCGCCTCGTGCCGTGCACCGCGCCTGCGCAGCCGCCTGCGCCTCGAAGTCGCGCGAG
AGCAGGAAGCACTTGTGGCCAAGGCGCACCCCCTTCAGGCAGCCCTCTAAGCGGCCGTGC
TCGCGCTCAGCGCGGCTCTGCGCCTCCTGCAGGGTTTGCAAGGCGTCGCGGGTGTCGCCC
GCCACCTCCCGCAGCTGCCGCAGCCCCCGAGTCAGCTCGGCCACGCGGGTGTCCAACGCG
TGCAAACGGACGTGTACTTGGTGCAGGCCTGCGTCCAGGCCGGCAAGGCGGCCCAAGATA
TAAGTGACAGTGTCCTCAGGGGTGGGAGAGGGGCTGGGTCTGGAGGAAGGGGTTCGTGTT
GGTTCCTCCTCTCCTTCCTCTTCCCCCTGAGCATCGTTCTCAGTCACTCGGGCCCCTTCG
CCTGTAGGGGTTCCCTGGGGATTTTCGTCCCCCCTCGGCGCAGGCAGCCCCAGGGCTTCC
TGTAAATGCTTGAGCATGAGGGCCTCCCTCTCCCGCTCCTCCTCCTGGGCGCCACCCCAG
ACCCCCTCCCACTCCCTCTCAGCTCCCCGAGCCCCATGACTGAAGCTCAGGAGCTGGGGT
ACCACCAGGGCCCCGAGGAGCCAGGCTGCCTGCATCAGGCTGGGCTCGGAGCACCCAAGG
CTGCAGAAGGGTATCTCGGAGGAGAATGGTGTCTCGGTGGACTGGAGCGTGTGCAGATTA
CCCAGCCTCCTGGTCCCCGCCTCTTCCAGCTTCTGTCTGGTCCCTCTCCTCCCAACTCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61826305|ref|XP_600895.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826305|ref|XP_600895.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               849-967, - strand, RNAz p=0.950662
               

               
               871-1020, + strand, RNAz p=0.803887
               

               
               1036-1138, - strand, RNAz p=0.768092

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               849-967, - strand, RNAz p=0.950662
               

               
               871-1020, + strand, RNAz p=0.803887
               

               
               1036-1138, - strand, RNAz p=0.768092

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_002975, -
               

               
               5' of NM_002975, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002975, -
               

               
               5' of NM_002975, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-464, gnl|bosTau2|chr18 (49428915-49428453)
               

               
               3-464, gnl|Hg17|chr19 (55920550-55920090)
               

               
               3-464, gnl|Mm7|chr7 (40478361-40478823)
               


               
               849-1138, gnl|bosTau2|chr18 (49427142-49426851)
               

               
               849-1138, gnl|canFam2|chr1 (108962294-108961871)
               

               
               849-1138, gnl|echTel1|scaffold_243200 (722-364)
               

               
               849-1138, gnl|hg17|chr19 (55918389-55918845)
               

               
               849-1138, gnl|Hg17|chr19 (55918741-55918436)
               

               
               849-1138, gnl|mm7|chr7 (40480808-40480388)
               

               
               849-1138, gnl|Mm7|chr7 (40480455-40480762)
               

               
               849-1138, gnl|panTro1|chr20 (53361314-53361770)
               

               
               849-1138, gnl|rheMac2|chr19 (56930706-56931162)
               

               
               849-1138, gnl|rn3|chr1 (94866519-94866100)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-464, gnl|bosTau2|chr18 (49428915-49428453)
               

               
               3-464, gnl|Hg17|chr19 (55920550-55920090)
               

               
               3-464, gnl|Mm7|chr7 (40478361-40478823)
               


               
               849-1138, gnl|bosTau2|chr18 (49427142-49426851)
               

               
               849-1138, gnl|canFam2|chr1 (108962294-108961871)
               

               
               849-1138, gnl|echTel1|scaffold_243200 (722-364)
               

               
               849-1138, gnl|hg17|chr19 (55918389-55918845)
               

               
               849-1138, gnl|Hg17|chr19 (55918741-55918436)
               

               
               849-1138, gnl|mm7|chr7 (40480808-40480388)
               

               
               849-1138, gnl|Mm7|chr7 (40480455-40480762)
               

               
               849-1138, gnl|panTro1|chr20 (53361314-53361770)
               

               
               849-1138, gnl|rheMac2|chr19 (56930706-56931162)
               

               
               849-1138, gnl|rn3|chr1 (94866519-94866100)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               cty (0.10408)

	849-967, - strand, RNAz p=0.950662
	871-1020, + strand, RNAz p=0.803887
	1036-1138, - strand, RNAz p=0.768092

	3-464, gnl\|bosTau2\|chr18 (49428915-49428453)
	3-464, gnl\|Hg17\|chr19 (55920550-55920090)
	3-464, gnl\|Mm7\|chr7 (40478361-40478823)

	849-1138, gnl\|bosTau2\|chr18 (49427142-49426851)
	849-1138, gnl\|canFam2\|chr1 (108962294-108961871)
	849-1138, gnl\|echTel1\|scaffold_243200 (722-364)
	849-1138, gnl\|hg17\|chr19 (55918389-55918845)
	849-1138, gnl\|Hg17\|chr19 (55918741-55918436)
	849-1138, gnl\|mm7\|chr7 (40480808-40480388)
	849-1138, gnl\|Mm7\|chr7 (40480455-40480762)
	849-1138, gnl\|panTro1\|chr20 (53361314-53361770)
	849-1138, gnl\|rheMac2\|chr19 (56930706-56931162)
	849-1138, gnl\|rn3\|chr1 (94866519-94866100)