Non-Coding RNA Search

Ss1.1-Spl1-SPL010027C08.5

Sequence:


               
               AAAAAGTTTCCCGACCACAAGCACCAAAGCAGAGGGGCAGGCAGCACGCGGCCCAGCAGC
CAGAGTACCAGCCCAGCCATGGTCCCTGAGATGAGCCAACGCCAAGAGTTCCAAGCCTCT
GAGTTTGCCTTCTTCCTGGAAAACTCTTCCTATGACTATGGAGAGAATGAGAGCGACTCC
TGCTGTGCCTCCCCACCCTGTCCGCAGGACTTCAGCCTCAGCTTCGACCGGGCCTTCCTG
CCGGCCCTCTACAGCCTCCTCTTCGTGCTGGGGCTGTTGGGCAACGGTGCCGTGGTGGCC
GTGCTGCTTAGCCAGCGGGTGGTCCTGAGCAGCACCGATACCTTCCTGCTGCACTTGGCC
GTGGCCGACGTGCTGCTGGTGCTGACGCTCCCGCTCTGGGCGGTGGATGCGGCCATCCAG
TGGGTGTTCGGCTCCGGCCTCTGCAAAGTGGCGGGTGCCCTCTTCAATATCAACTTCTAT
GCGGGGGCCCTCCTGCTGGCCTGTATCAGCTTTGATCGGTACCTGAGCATCGTGCACGCC
ACCCAGCTCTACCGCCGGGGCCCCCAGGCCCGTGTGACCCTCACGTGCATGGCGGTCTGG
GGGCTCTGTCTGCTCTTTGCGCTCCCAGACTTCATCTTCCTATCGGCCCACCCTGATGAG
CGCCTCAACGCCACCCACTGCCAGTACAGCTTCCCCCAGGTGGGCCGCACAGCCCTGCGT
GTCCTGCAGCTGGTCGCAGGTTTCCTGCTGCCCCTGCTGGTCATGGCCTATTGCTACGCC
CGCATCCTGGCTGTGCTGCTGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGTTTCCCGACCACAAGCACCAAAGCAGAGGGGCAGGCAGCACGCGGCCCAGCAGC
CAGAGTACCAGCCCAGCCATGGTCCCTGAGATGAGCCAACGCCAAGAGTTCCAAGCCTCT
GAGTTTGCCTTCTTCCTGGAAAACTCTTCCTATGACTATGGAGAGAATGAGAGCGACTCC
TGCTGTGCCTCCCCACCCTGTCCGCAGGACTTCAGCCTCAGCTTCGACCGGGCCTTCCTG
CCGGCCCTCTACAGCCTCCTCTTCGTGCTGGGGCTGTTGGGCAACGGTGCCGTGGTGGCC
GTGCTGCTTAGCCAGCGGGTGGTCCTGAGCAGCACCGATACCTTCCTGCTGCACTTGGCC
GTGGCCGACGTGCTGCTGGTGCTGACGCTCCCGCTCTGGGCGGTGGATGCGGCCATCCAG
TGGGTGTTCGGCTCCGGCCTCTGCAAAGTGGCGGGTGCCCTCTTCAATATCAACTTCTAT
GCGGGGGCCCTCCTGCTGGCCTGTATCAGCTTTGATCGGTACCTGAGCATCGTGCACGCC
ACCCAGCTCTACCGCCGGGGCCCCCAGGCCCGTGTGACCCTCACGTGCATGGCGGTCTGG
GGGCTCTGTCTGCTCTTTGCGCTCCCAGACTTCATCTTCCTATCGGCCCACCCTGATGAG
CGCCTCAACGCCACCCACTGCCAGTACAGCTTCCCCCAGGTGGGCCGCACAGCCCTGCGT
GTCCTGCAGCTGGTCGCAGGTTTCCTGCTGCCCCTGCTGGTCATGGCCTATTGCTACGCC
CGCATCCTGGCTGTGCTGCTGGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55663439|ref|XP_521125.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55663439|ref|XP_521125.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               242-441, - strand, RNAz p=0.524768
               

               
               522-641, - strand, RNAz p=0.611954
               

               
               682-804, - strand, RNAz p=0.887265

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-441, - strand, RNAz p=0.524768
               

               
               522-641, - strand, RNAz p=0.611954
               

               
               682-804, - strand, RNAz p=0.887265

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               89-804, gnl|bosTau2|chrX (23098244-23098959)
               

               
               89-804, gnl|Hg17|chrX (70620332-70619611)
               

               
               89-804, gnl|Mm7|chrX (97060399-97059681)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-804, gnl|bosTau2|chrX (23098244-23098959)
               

               
               89-804, gnl|Hg17|chrX (70620332-70619611)
               

               
               89-804, gnl|Mm7|chrX (97060399-97059681)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.20816)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)

	242-441, - strand, RNAz p=0.524768
	522-641, - strand, RNAz p=0.611954
	682-804, - strand, RNAz p=0.887265

	89-804, gnl\|bosTau2\|chrX (23098244-23098959)
	89-804, gnl\|Hg17\|chrX (70620332-70619611)
	89-804, gnl\|Mm7\|chrX (97060399-97059681)