Non-Coding RNA Search

Ss1.1-Spl1-SPL010027G04.5

Sequence:


               
               TGGCGCGTGGGGCTTGAGGCCGAGAGCAGTCCCTGCCGCCACCAACATGGAGACTTTGTA
CCGAGTCCCGTTCTTAGTGCTCGAATGCCCCAACCTGAAGCTGAAGAAGCCGCCCTGGGT
GCACATGCCGTCGGCTATGACTGTGTACGCTCTGGTGGTGGTGTCTTACTTCCTCATCAC
CGGAGGAATAATTTATGATGTTATTGTCGAACCTCCAAGTGTCGGCTCTATGACTGATGA
GCACGGCCATCAAAGACCAGTAGCTTTCTTGGCCTACAGAGTAAATGGACAATATATTAT
GGAAGGACTCGCATCCAGCTTCCTGTTTACAATGGGAGGTTTAGGTTTCATAATCCTAGA
CCGATCCAATGCACCAAACATTCCAAAACTCAACAGATTTCTTCTTCTCTTCATCGGATT
CGTCTGTGTCTTACTGAGTTTTTTCATGGCTAGAGTATTCATGAGAATGAAACTGCCGGG
CTATCTGATGGGATAGAGTACCTTTTTAGAAGAAATCAGTGGATACTGAATTTGCTCCTG
TTAACGAAGTTTTCAAAGGCTGTACCAGTCCTCTGATAAGAAATATAGAAAAGGAGGAAA
AGTGGCAGAAAAGAAACATCTAGTGAAAATGTAGGAAGCATAATAAAGCTTGGACTAGAA
TGTCTTTTTGGTATCAAAGAGACAAGCTTATCAGTATTTTGTCCTGCTGGTCTATACTGA
CGTACCAATGATATTAAGTGGCATTTCCTTCTTTTTTTTTCATTTCTTAAAGAAAATGTA
CTTCATTTCTACAACTGTAATATTGAATAAAGTGATTATTTTTTACAGTCCCCTTACCGT
TTTTTGGAGGCGACATTTCTGACCTTCACAAATTAATGTGCAATCAGGAAGTGAGATCCC
ATAAGCTGAGAACTCTGGACAGCTAGTCAGCCTTTCCCGTGGTGCTTTGCCTTTAAACAG
AGTGTGTGACAGTACATGATTTCAGATATGTCTGTAAGACTGTTTGCTGAACAATAAGAT
GTATGAAAGGAGCAGAAATAAATAATTTTTCTAATTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGCGTGGGGCTTGAGGCCGAGAGCAGTCCCTGCCGCCACCAACATGGAGACTTTGTA
CCGAGTCCCGTTCTTAGTGCTCGAATGCCCCAACCTGAAGCTGAAGAAGCCGCCCTGGGT
GCACATGCCGTCGGCTATGACTGTGTACGCTCTGGTGGTGGTGTCTTACTTCCTCATCAC
CGGAGGAATAATTTATGATGTTATTGTCGAACCTCCAAGTGTCGGCTCTATGACTGATGA
GCACGGCCATCAAAGACCAGTAGCTTTCTTGGCCTACAGAGTAAATGGACAATATATTAT
GGAAGGACTCGCATCCAGCTTCCTGTTTACAATGGGAGGTTTAGGTTTCATAATCCTAGA
CCGATCCAATGCACCAAACATTCCAAAACTCAACAGATTTCTTCTTCTCTTCATCGGATT
CGTCTGTGTCTTACTGAGTTTTTTCATGGCTAGAGTATTCATGAGAATGAAACTGCCGGG
CTATCTGATGGGATAGAGTACCTTTTTAGAAGAAATCAGTGGATACTGAATTTGCTCCTG
TTAACGAAGTTTTCAAAGGCTGTACCAGTCCTCTGATAAGAAATATAGAAAAGGAGGAAA
AGTGGCAGAAAAGAAACATCTAGTGAAAATGTAGGAAGCATAATAAAGCTTGGACTAGAA
TGTCTTTTTGGTATCAAAGAGACAAGCTTATCAGTATTTTGTCCTGCTGGTCTATACTGA
CGTACCAATGATATTAAGTGGCATTTCCTTCTTTTTTTTTCATTTCTTAAAGAAAATGTA
CTTCATTTCTACAACTGTAATATTGAATAAAGTGATTATTTTTTACAGTCCCCTTACCGT
TTTTTGGAGGCGACATTTCTGACCTTCACAAATTAATGTGCAATCAGGAAGTGAGATCCC
ATAAGCTGAGAACTCTGGACAGCTAGTCAGCCTTTCCCGTGGTGCTTTGCCTTTAAACAG
AGTGTGTGACAGTACATGATTTCAGATATGTCTGTAAGACTGTTTGCTGAACAATAAGAT
GTATGAAAGGAGCAGAAATAAATAATTTTTCTAATTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13384930|ref|NP_079785.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13384930|ref|NP_079785.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-278, + strand, RNAz p=0.535588

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-278, + strand, RNAz p=0.535588

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-328, gnl|bosTau2|chr19 (2937541-2937221)
               

               
               1-328, gnl|Hg17|chr6 (159233633-159233223)
               

               
               1-328, gnl|Mm7|chr10 (61029130-61028828)
               


               
               435-1063, gnl|bosTau2|chr19 (2937221-2936591)
               

               
               435-1063, gnl|Hg17|chr6 (159233223-159232562)
               

               
               435-1063, gnl|Mm7|chr10 (61028828-61028103)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-328, gnl|bosTau2|chr19 (2937541-2937221)
               

               
               1-328, gnl|Hg17|chr6 (159233633-159233223)
               

               
               1-328, gnl|Mm7|chr10 (61029130-61028828)
               


               
               435-1063, gnl|bosTau2|chr19 (2937221-2936591)
               

               
               435-1063, gnl|Hg17|chr6 (159233223-159232562)
               

               
               435-1063, gnl|Mm7|chr10 (61028828-61028103)

Expressed library(ies): 52 entry(ies)

More info

Expressed library(ies): 52 entry(ies)

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               ret (1.28733)
               

               
               lun (0.902935)
               

               
               cbe (0.717703)
               

               
               nje (0.66368)
               

               
               isp (0.601504)
               

               
               lin (0.582411)
               

               
               sag (0.548145)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               cut (0.509771)
               

               
               mga (0.480615)
               

               
               pgl (0.473934)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               pty (0.428143)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               pla (0.401016)
               

               
               lyg (0.399308)
               

               
               ova (0.387397)
               

               
               sug (0.381874)
               

               
               tra (0.369276)
               

               
               fty (0.351679)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               nca (0.273748)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 52 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (1.28733)
               

               
               lun (0.902935)
               

               
               cbe (0.717703)
               

               
               nje (0.66368)
               

               
               isp (0.601504)
               

               
               lin (0.582411)
               

               
               sag (0.548145)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               cut (0.509771)
               

               
               mga (0.480615)
               

               
               pgl (0.473934)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               pty (0.428143)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               pla (0.401016)
               

               
               lyg (0.399308)
               

               
               ova (0.387397)
               

               
               sug (0.381874)
               

               
               tra (0.369276)
               

               
               fty (0.351679)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               nca (0.273748)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	1-328, gnl\|bosTau2\|chr19 (2937541-2937221)
	1-328, gnl\|Hg17\|chr6 (159233633-159233223)
	1-328, gnl\|Mm7\|chr10 (61029130-61028828)

	435-1063, gnl\|bosTau2\|chr19 (2937221-2936591)
	435-1063, gnl\|Hg17\|chr6 (159233223-159232562)
	435-1063, gnl\|Mm7\|chr10 (61028828-61028103)

	ret (1.28733)
	lun (0.902935)
	cbe (0.717703)
	nje (0.66368)
	isp (0.601504)
	lin (0.582411)
	sag (0.548145)
	duo (0.518403)
	pro (0.512033)
	cut (0.509771)
	mga (0.480615)
	pgl (0.473934)
	fat (0.442282)
	liv (0.438853)
	pty (0.428143)
	amn (0.417711)
	hea (0.408998)
	pla (0.401016)
	lyg (0.399308)
	ova (0.387397)
	sug (0.381874)
	tra (0.369276)
	fty (0.351679)
	cje (0.330469)
	csp (0.322373)
	nca (0.273748)
	bla (0.248694)
	eep (0.245128)
	mgp (0.230681)
	fli (0.202881)
	fcc (0.197785)
	eje (0.197668)
	col (0.195008)
	nep (0.183925)
	ill (0.175593)
	sin (0.174948)
	rec (0.17307)
	mcp (0.170648)
	cki (0.165235)
	nco (0.161734)
	fco (0.157208)
	eli (0.151814)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	csk (0.140746)
	ute (0.132784)
	kid (0.129735)
	thg (0.126791)
	jca (0.11396)
	spc (0.113366)
	ldo (0.0970026)