Ss1.1-Spl1-SPL010027H03.5
|
GGCTGGGCGCTGCGCATGCGCGGGCAGCTCCCCCACGAAGGGTTGAGAGAGTCGGACCGG
CGCGGCCAGGCGGGCGCGGAGCGGGGTCAGGATGGACGAGGACGTGCTGACTACGCTGAA
GATCCTCATCATCGGCGAGAGTGGCGTGGGCAAGTCCAGCCTGCTCTTGAGGTTCACAGA
TGATACTTTTGATCCAGAACTTGCAGCAACAATAGGTGTTGACTTTAAGGTGAAAACAAT
TTCAGTGGATGGAAATAAGGCTAAACTTGCAATATGGGATACTGCTGGTCAAGAAAGGTT
CAGAACATTAACTCCCAGCTATTATAGAGGTGCACAGGGTGTTATATTAGTTTATGATGT
CACAAGAAGAGACACCTTTGTTAAGCTGGATAATTGGTTAAATGAATTGGAAACATACTG
TACAAGAAATGACATAGTAAACATGCTAGTTGGAAATAAAATTGATAAGGAAAATCGTGA
AGTTGACAGAAATGAAGGCCTGAAATTTGCACGAAAGCATTCCATGTTATTTATAGAGGC
AAGTGCAAAAACCTGTGATGGTGTACAGTGTGCTTTTGAGGAGCTTGTTGAAAAGATCAT
TCAGACACCTGGACTGTGGGAAAGTGAGAACCAGAATAAAGGAGTGAAACTGACACACAG
GGAAGAAGGTCAAGGAGGAGGAGCATGTGGTGGTTATTGTTCTGTGTTATAAACTCTGGG
AAACTCCATCTCTTGCATATTTGATCAGATAGTGTCATCTTTCTGTATATAAACTCTAAC
TGCTGTTTTAGGGACCTTGCAGTTTGCACATATTTGTTTTGTATCATGGCAGTGAATAAT
TGCGAGAAATCCCACTCATTGACTTTTCCAGGTAAAGCGTTATGGTAAGCATGCACAGTT
TGCAGTCTGCAGTTTTTTATGTAACATAAAATAGGTGTACCTTTATAAGTACATTTGATT
TTATGATTTACATTCATCATGTGATTTTAAAAAAATCCACCTCTAGTATATGTTGGTAAA
AGGTCTACTTTTGGTCTCCTTTTTGCTTAAATACTCCTATCAATTATTGAATTAATTGGT
ATGTAGAACTCCTAGAACTACTGGGAGATAGACAGGTATCATCAAACCTGGCAAATTTCC
CTTCAGAAATAACAGTGAGCATGATTCCACAGCTTTTCTAGGACATTTGCTGACGGATTC
TCTTTTAGTACTAAGCAAAATTCTCTTTATAGGATATAGTCCAGGCCAATTTATAATTAT
AAACCTTTGTTCTGATGATGCTTCCAGAATAGCATTGATGTATTAAAGTTTGGTCTTACT
TTTAATTTACTTCAATGAGTAGCTCAGTTGCCTAACTGGAGTTTTAATTCTGTGATATGT
ATATGGGATTCATGACCCTTTGTGCAGCATTTTTGGTTATGTGGTATTTGGCAGAATGGC
AGTAGGGTTTTCCCCATTTTGGTTTCGGAAGGACAGGAATAGTGTGTTTATGTAATTCAT
GTAGTACTTACCACTCTTAAAACCAACACCTTTTCCCATAAATGTTGGTGATGTTTGTCC
AGGTACCTCAGTTGTAGTTTGTGTAATGTTAATGAATTCCTGTATCTTATGACTTCCATA
AATGGCTAGTTGGTATTCAAAAAACCTACTTCTGTGTTTTGCGGGTTGGGGAAAAAAAAC
ACTAAATTATAATTTGAGAAAGGCTTATTGCTTCCAGATTTTGATGTGTGTGGGAAAATA
CTGTTGCAATGAAAATCTTGGTAATTTACTGTAACAAGTAGGCAATAGTTTATCAGAACC
AACTTGTACAGACTAATAAATCTTTTCCACAGTATTCAGTTTTCTAACCTCTTGCTATTG
TACATTGTATATTTTTTCACTCATATATTATTTAATTGACATTGCTTTCTGCTATTTTAA
GCCTCCAAAGAAGTAAATTTGTGCTTTCAGGCAGGTCATTCTAACATCCCTTGGTAAGAT
TAATAAGAAATACTAATTTCTGGGCAGTTTGTTCTCTGTATACAATTGCAGATGATAAGC
ATTTTTATGGATCACCTTTGCAGTACATGTGTTAATGGATTGGAATGTACATCTTCATAT
AGGAAAACAGTACATTCTACGTGCCTCCCACTTGTTAGACTACATTACATATGACTAAAG
GTTTTATATGGTATGTATGTTTTTATTAAATATGAAACATATACTACTTTAATATTGGAG
AAAGATAGCTAACACATGTACTTAAGATTTGTTGTTACATTAAAAATGTAGATTTGTGTA
TTTATGTAGTTTCTGTATTGAGACATTTCTGTTCATTACCTTTTGCTCCTTGAGCTATAT
AATAATTATCTCTCTGTGCATTGGATTGTCTTGATTTGGTCCGAATTTGGATATATATAC
GTCACTTAACTTTTAAAAACTCATTTTGTTTGATAAATTTATATTGTAACCTTTTATAGT
TTTTGAATAAATATAGCCTGCTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCTGGGCGCTGCGCATGCGCGGGCAGCTCCCCCACGAAGGGTTGAGAGAGTCGGACCGG
CGCGGCCAGGCGGGCGCGGAGCGGGGTCAGGATGGACGAGGACGTGCTGACTACGCTGAA
GATCCTCATCATCGGCGAGAGTGGCGTGGGCAAGTCCAGCCTGCTCTTGAGGTTCACAGA
TGATACTTTTGATCCAGAACTTGCAGCAACAATAGGTGTTGACTTTAAGGTGAAAACAAT
TTCAGTGGATGGAAATAAGGCTAAACTTGCAATATGGGATACTGCTGGTCAAGAAAGGTT
CAGAACATTAACTCCCAGCTATTATAGAGGTGCACAGGGTGTTATATTAGTTTATGATGT
CACAAGAAGAGACACCTTTGTTAAGCTGGATAATTGGTTAAATGAATTGGAAACATACTG
TACAAGAAATGACATAGTAAACATGCTAGTTGGAAATAAAATTGATAAGGAAAATCGTGA
AGTTGACAGAAATGAAGGCCTGAAATTTGCACGAAAGCATTCCATGTTATTTATAGAGGC
AAGTGCAAAAACCTGTGATGGTGTACAGTGTGCTTTTGAGGAGCTTGTTGAAAAGATCAT
TCAGACACCTGGACTGTGGGAAAGTGAGAACCAGAATAAAGGAGTGAAACTGACACACAG
GGAAGAAGGTCAAGGAGGAGGAGCATGTGGTGGTTATTGTTCTGTGTTATAAACTCTGGG
AAACTCCATCTCTTGCATATTTGATCAGATAGTGTCATCTTTCTGTATATAAACTCTAAC
TGCTGTTTTAGGGACCTTGCAGTTTGCACATATTTGTTTTGTATCATGGCAGTGAATAAT
TGCGAGAAATCCCACTCATTGACTTTTCCAGGTAAAGCGTTATGGTAAGCATGCACAGTT
TGCAGTCTGCAGTTTTTTATGTAACATAAAATAGGTGTACCTTTATAAGTACATTTGATT
TTATGATTTACATTCATCATGTGATTTTAAAAAAATCCACCTCTAGTATATGTTGGTAAA
AGGTCTACTTTTGGTCTCCTTTTTGCTTAAATACTCCTATCAATTATTGAATTAATTGGT
ATGTAGAACTCCTAGAACTACTGGGAGATAGACAGGTATCATCAAACCTGGCAAATTTCC
CTTCAGAAATAACAGTGAGCATGATTCCACAGCTTTTCTAGGACATTTGCTGACGGATTC
TCTTTTAGTACTAAGCAAAATTCTCTTTATAGGATATAGTCCAGGCCAATTTATAATTAT
AAACCTTTGTTCTGATGATGCTTCCAGAATAGCATTGATGTATTAAAGTTTGGTCTTACT
TTTAATTTACTTCAATGAGTAGCTCAGTTGCCTAACTGGAGTTTTAATTCTGTGATATGT
ATATGGGATTCATGACCCTTTGTGCAGCATTTTTGGTTATGTGGTATTTGGCAGAATGGC
AGTAGGGTTTTCCCCATTTTGGTTTCGGAAGGACAGGAATAGTGTGTTTATGTAATTCAT
GTAGTACTTACCACTCTTAAAACCAACACCTTTTCCCATAAATGTTGGTGATGTTTGTCC
AGGTACCTCAGTTGTAGTTTGTGTAATGTTAATGAATTCCTGTATCTTATGACTTCCATA
AATGGCTAGTTGGTATTCAAAAAACCTACTTCTGTGTTTTGCGGGTTGGGGAAAAAAAAC
ACTAAATTATAATTTGAGAAAGGCTTATTGCTTCCAGATTTTGATGTGTGTGGGAAAATA
CTGTTGCAATGAAAATCTTGGTAATTTACTGTAACAAGTAGGCAATAGTTTATCAGAACC
AACTTGTACAGACTAATAAATCTTTTCCACAGTATTCAGTTTTCTAACCTCTTGCTATTG
TACATTGTATATTTTTTCACTCATATATTATTTAATTGACATTGCTTTCTGCTATTTTAA
GCCTCCAAAGAAGTAAATTTGTGCTTTCAGGCAGGTCATTCTAACATCCCTTGGTAAGAT
TAATAAGAAATACTAATTTCTGGGCAGTTTGTTCTCTGTATACAATTGCAGATGATAAGC
ATTTTTATGGATCACCTTTGCAGTACATGTGTTAATGGATTGGAATGTACATCTTCATAT
AGGAAAACAGTACATTCTACGTGCCTCCCACTTGTTAGACTACATTACATATGACTAAAG
GTTTTATATGGTATGTATGTTTTTATTAAATATGAAACATATACTACTTTAATATTGGAG
AAAGATAGCTAACACATGTACTTAAGATTTGTTGTTACATTAAAAATGTAGATTTGTGTA
TTTATGTAGTTTCTGTATTGAGACATTTCTGTTCATTACCTTTTGCTCCTTGAGCTATAT
AATAATTATCTCTCTGTGCATTGGATTGTCTTGATTTGGTCCGAATTTGGATATATATAC
GTCACTTAACTTTTAAAAACTCATTTTGTTTGATAAATTTATATTGTAACCTTTTATAGT
TTTTGAATAAATATAGCCTGCTTT
|
|
gi|61847486|ref|XP_583719.1| |
Protein identifier
|
gi|61847486|ref|XP_583719.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-159, gnl|bosTau2|chr8 (17946123-17946289) |
|
1-159, gnl|Hg17|chr10 (27833210-27833372) |
|
1-159, gnl|Mm7|chr18 (6969065-6969223) |
| |
|
342-470, gnl|bosTau2|chr8 (17969720-17969848) |
|
342-470, gnl|Hg17|chr10 (27862661-27862789) |
|
342-470, gnl|Mm7|chr18 (6988452-6988580) |
| |
|
520-1763, gnl|bosTau2|chr8 (17973010-17974243) |
|
520-1763, gnl|Hg17|chr10 (27866796-27868060) |
|
520-1763, gnl|Mm7|chr18 (6992356-6993596) |
| |
|
2158-2484, gnl|bosTau2|chr11 (12965416-12965106) |
|
2158-2484, gnl|Hg17|chr10 (27868436-27868758) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-159, gnl|bosTau2|chr8 (17946123-17946289) |
|
1-159, gnl|Hg17|chr10 (27833210-27833372) |
|
1-159, gnl|Mm7|chr18 (6969065-6969223) |
| |
|
342-470, gnl|bosTau2|chr8 (17969720-17969848) |
|
342-470, gnl|Hg17|chr10 (27862661-27862789) |
|
342-470, gnl|Mm7|chr18 (6988452-6988580) |
| |
|
520-1763, gnl|bosTau2|chr8 (17973010-17974243) |
|
520-1763, gnl|Hg17|chr10 (27866796-27868060) |
|
520-1763, gnl|Mm7|chr18 (6992356-6993596) |
| |
|
2158-2484, gnl|bosTau2|chr11 (12965416-12965106) |
|
2158-2484, gnl|Hg17|chr10 (27868436-27868758) |
|
mgp (0.922722) |
|
mgm (0.901713) |
|
liv (0.731422) |
|
ret (0.643666) |
|
cty (0.62448) |
|
kid (0.518941) |
|
mga (0.480615) |
|
bfe (0.449573) |
|
elu (0.385356) |
|
ill (0.351185) |
|
sin (0.349895) |
|
lin (0.291206) |
|
pty (0.285429) |
|
pla (0.267344) |
|
clu (0.239292) |
|
med (0.232504) |
|
cbl (0.229595) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
isp (0.150376) |
|
fat (0.147427) |
|
hyp (0.142837) |
|
che (0.136314) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ova (0.129132) |
|
sug (0.127291) |
|
thg (0.126791) |
|
tra (0.123092) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
nbm (0.0993246) |
|
mgp (0.922722) |
|
mgm (0.901713) |
|
liv (0.731422) |
|
ret (0.643666) |
|
cty (0.62448) |
|
kid (0.518941) |
|
mga (0.480615) |
|
bfe (0.449573) |
|
elu (0.385356) |
|
ill (0.351185) |
|
sin (0.349895) |
|
lin (0.291206) |
|
pty (0.285429) |
|
pla (0.267344) |
|
clu (0.239292) |
|
med (0.232504) |
|
cbl (0.229595) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
isp (0.150376) |
|
fat (0.147427) |
|
hyp (0.142837) |
|
che (0.136314) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ova (0.129132) |
|
sug (0.127291) |
|
thg (0.126791) |
|
tra (0.123092) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
nbm (0.0993246) |
