Non-Coding RNA Search

Ss1.1-Spl1-SPL010028D05.5

Sequence:


               
               GGTGAGGCCCGTCTGCAAAGGTGAGGATGGATAGGAAGGGCCTCGAGGGATGTATTCTTG
CACCTTTGGAGGCTTCTTTCTCCTTTGCCTGTTCTGCCTTTGTCCTCGGGGTTCACGGAG
GCCAGGTCCTAATGCCCACTGGCATTTCTGGCCTCATCTTCCCGGCCTTCCTCTCACAGG
CTTCCGCTCCATCCCCACTTGCCAATATCTTTTTCCTTTAGGGATCTCACACCACCGTCT
ATGAATGTTAGGCGAGCCCCACCCCTTCTTTTTATAGATGGAGACTCAGAGATTGCTCTT
GGGAGCTGCCAGAAAAAAAAGATTAGAAGCCCGTCTTTGGACTCCTAGTCTAGCACTGTT
TACTTTAAAGCAGTGGCTGTTGCCAGGAATCCGGGTTTGGGAGCTACCCTCTAATAGAGA
TTTTCAAGGCCAAAAGGGTTTGTCAAGGTGCTTTCTCCTCCTCTGGGAGAGTCACAATGC
TCATTAGCATAGCAAAGGCTCTGTGAAGTCCTGCTCTAAAAGAAGCCCAAGTAATTTAGT
TTCCAGTGTTACTCACCTCTGGATCTGGACCAGGACCAGTTTTTCCCACTTTAAGGTTCC
AAGCAGCTCTGTTTTGTCTGGGCTCTCCTTTGACACCAAGGGGCCCAACCCTTTGGCTGC
GGTCTGTTTGAAGATGGGGGGCACTCCTTTTCCCCAGGGAGTTCCCTTAGCAGAGGGAGC
CCCACAACCCCTCTGTGAAAGAGAAGATAGCTGCTCTCCAGACCAGTGAGAGCCTGGGAA
CTGTGGATTTGAACCTTTCTTTACATTATCTGGGAAATGAAGCCAAGTTCTCCAGATGGT
GTTCCAGTCAAAAGGAACATCACCTGTAAGAGATGCTAGCATTGACCATGAGCAGCTGGC
AGGAGTGAGTCACATCAAAGAGAGAAGAAAACTCTGGATCTGGAGTGAACAGCTGGCCCA
GCCTGATAAGATTTCCACGTGGCTAAGGCCATGGAGACTCCCAGAGCCCGGCATGCCGAC
CTCTCCCAGGGCCCGCTTCCCTGGGCCGGCAACACCATTCTGACCTGGGTCAGCAGAGGG
CTTCATTGGCCATAGAGGGAGGAGGGGAGAGGGAACAGCCTTTGCCCAGCAGCTCCCTTT
CTACAGCATCCAATGGAAGAGCCAGGATGGTGAAGGTCACCACTTAAGCTGCGTCCTCAG
CTCGGATCCGGCTCCTTGAGGACCTCTTCCTCACCCCAGCCCATGGTGCTCTGTCTGCAG
TCGAGACCTCACTCAGGAGCAGACGTCTCCTCGGCCTTCATGATACCTTATCCATCCGCA
CGTGCCTGAAACATTCCTGAGCCCACTGGCTCATCCAGATGTGCCTTCCTGCTTGGCCTC
CAGCTGCTTCTCCACGTGTGAGAAGGACATGAAGACGGCCCCCACACCCACCCTCTCCTC
CCCTCGGGGCCCTGTGCCATGAGAATGGCCACCTGAGCTGGCCCAGAACTTTTGGATGTG
GGAGGCAGCCTCCTTGGCCTCCCTCTGTGGACTCTAGGACCCAATCCAAGCGAGACTGCT
GTGGGCTGCCTCCAGCCCAAACGCCTGGGACCAAGCATGGGCCCAGGAGAGGATTTCTGC
AGTGTTCTACGATGGCCCAGAGAGAGGGTGAATGTGGGGTGGGGTGGGGGGTGGGGAGAG
GGGACCAATGTGCCTTGTTCCGTCGTCTAGTGGTGATTACTAATGTGCCTTTCTGAATAA
AGTTTGGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGAGGCCCGTCTGCAAAGGTGAGGATGGATAGGAAGGGCCTCGAGGGATGTATTCTTG
CACCTTTGGAGGCTTCTTTCTCCTTTGCCTGTTCTGCCTTTGTCCTCGGGGTTCACGGAG
GCCAGGTCCTAATGCCCACTGGCATTTCTGGCCTCATCTTCCCGGCCTTCCTCTCACAGG
CTTCCGCTCCATCCCCACTTGCCAATATCTTTTTCCTTTAGGGATCTCACACCACCGTCT
ATGAATGTTAGGCGAGCCCCACCCCTTCTTTTTATAGATGGAGACTCAGAGATTGCTCTT
GGGAGCTGCCAGAAAAAAAAGATTAGAAGCCCGTCTTTGGACTCCTAGTCTAGCACTGTT
TACTTTAAAGCAGTGGCTGTTGCCAGGAATCCGGGTTTGGGAGCTACCCTCTAATAGAGA
TTTTCAAGGCCAAAAGGGTTTGTCAAGGTGCTTTCTCCTCCTCTGGGAGAGTCACAATGC
TCATTAGCATAGCAAAGGCTCTGTGAAGTCCTGCTCTAAAAGAAGCCCAAGTAATTTAGT
TTCCAGTGTTACTCACCTCTGGATCTGGACCAGGACCAGTTTTTCCCACTTTAAGGTTCC
AAGCAGCTCTGTTTTGTCTGGGCTCTCCTTTGACACCAAGGGGCCCAACCCTTTGGCTGC
GGTCTGTTTGAAGATGGGGGGCACTCCTTTTCCCCAGGGAGTTCCCTTAGCAGAGGGAGC
CCCACAACCCCTCTGTGAAAGAGAAGATAGCTGCTCTCCAGACCAGTGAGAGCCTGGGAA
CTGTGGATTTGAACCTTTCTTTACATTATCTGGGAAATGAAGCCAAGTTCTCCAGATGGT
GTTCCAGTCAAAAGGAACATCACCTGTAAGAGATGCTAGCATTGACCATGAGCAGCTGGC
AGGAGTGAGTCACATCAAAGAGAGAAGAAAACTCTGGATCTGGAGTGAACAGCTGGCCCA
GCCTGATAAGATTTCCACGTGGCTAAGGCCATGGAGACTCCCAGAGCCCGGCATGCCGAC
CTCTCCCAGGGCCCGCTTCCCTGGGCCGGCAACACCATTCTGACCTGGGTCAGCAGAGGG
CTTCATTGGCCATAGAGGGAGGAGGGGAGAGGGAACAGCCTTTGCCCAGCAGCTCCCTTT
CTACAGCATCCAATGGAAGAGCCAGGATGGTGAAGGTCACCACTTAAGCTGCGTCCTCAG
CTCGGATCCGGCTCCTTGAGGACCTCTTCCTCACCCCAGCCCATGGTGCTCTGTCTGCAG
TCGAGACCTCACTCAGGAGCAGACGTCTCCTCGGCCTTCATGATACCTTATCCATCCGCA
CGTGCCTGAAACATTCCTGAGCCCACTGGCTCATCCAGATGTGCCTTCCTGCTTGGCCTC
CAGCTGCTTCTCCACGTGTGAGAAGGACATGAAGACGGCCCCCACACCCACCCTCTCCTC
CCCTCGGGGCCCTGTGCCATGAGAATGGCCACCTGAGCTGGCCCAGAACTTTTGGATGTG
GGAGGCAGCCTCCTTGGCCTCCCTCTGTGGACTCTAGGACCCAATCCAAGCGAGACTGCT
GTGGGCTGCCTCCAGCCCAAACGCCTGGGACCAAGCATGGGCCCAGGAGAGGATTTCTGC
AGTGTTCTACGATGGCCCAGAGAGAGGGTGAATGTGGGGTGGGGTGGGGGGTGGGGAGAG
GGGACCAATGTGCCTTGTTCCGTCGTCTAGTGGTGATTACTAATGTGCCTTTCTGAATAA
AGTTTGGTTTTT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               97-195, - strand, RNAz p=0.999953
               

               
               692-804, - strand, RNAz p=0.998449
               

               
               1486-1682, + strand, RNAz p=0.598203

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               97-195, - strand, RNAz p=0.999953
               

               
               692-804, - strand, RNAz p=0.998449
               

               
               1486-1682, + strand, RNAz p=0.598203

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_031484, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_031484, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               78-804, gnl|bosTau2|chr26 (10425049-10424335)
               

               
               78-804, gnl|Hg17|chr10 (99464831-99465561)
               


               
               1187-1741, gnl|bosTau2|chr26 (10422184-10421637)
               

               
               1187-1741, gnl|Hg17|chr10 (99467316-99467877)
               

               
               1187-1741, gnl|Mm7|chr19 (42044936-42045482)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-804, gnl|bosTau2|chr26 (10425049-10424335)
               

               
               78-804, gnl|Hg17|chr10 (99464831-99465561)
               


               
               1187-1741, gnl|bosTau2|chr26 (10422184-10421637)
               

               
               1187-1741, gnl|Hg17|chr10 (99467316-99467877)
               

               
               1187-1741, gnl|Mm7|chr19 (42044936-42045482)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cga (0.279096)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)

	97-195, - strand, RNAz p=0.999953
	692-804, - strand, RNAz p=0.998449
	1486-1682, + strand, RNAz p=0.598203

	78-804, gnl\|bosTau2\|chr26 (10425049-10424335)
	78-804, gnl\|Hg17\|chr10 (99464831-99465561)

	1187-1741, gnl\|bosTau2\|chr26 (10422184-10421637)
	1187-1741, gnl\|Hg17\|chr10 (99467316-99467877)
	1187-1741, gnl\|Mm7\|chr19 (42044936-42045482)

	cga (0.279096)
	eru (0.240096)
	ece (0.229305)
	nep (0.183925)
	ton (0.1755)
	pty (0.142714)
	hlv (0.139256)
	pla (0.133672)
	cov (0.132153)
	ese (0.126502)
	cly (0.120642)
	clu (0.119646)
	ecc (0.115035)