Non-Coding RNA Search

Ss1.1-Spl1-SPL010028E04.5

Sequence:


               
               TTCAAAATCATCTCTGAAAAACTGGTAACTATGCTTCCTTCCATTTTTAATCTTGCCCTA
ATATAAAATGTTTCTCGTTTCAGGGTAGGGAATGGAGAAATATTTCTAATCGTGTATTCA
TGTTCCAAAGGACTTGACATTCAACTTCCTGTTTCTTAGTTGATTATATTCCATGATGTG
CATATTACACGTGGTTTATAAGCTAAGCACTGGCTGTTTTTTTTTGTTCTCTTGTGAAAT
TGTATTTTTGTATGTTTCAACTAATTGTGATTGATTTGGCTTTTTTCTGGGTGACATAAA
GATTGCCAAACTCCATTTATAAATATATAAAACAAGAGTTCTATTTTAGCACAAAAGCAT
TTTATATTATTTATTGAATCCTTAGGTTTGTTTCCATCAAAAACATTCCTCAACACTTCT
GCTCCTTTTTATTTGTATAGTTTGTTATTTAAGGAAGGGCAGTCCTTTCTGTTGTGGGGT
TTTTTTTCCCCAACAAAATAAAACGGAAACAAAGCGTACAGCAATGTGGGGCAAACATCC
CGTCTCGCGGCCATGGACCGTTTTCATCAATGGCTTACCTTCCCATCTGTGCGAGAGGCA
AGGGCACTTCTTGGGGTGACATCTGACCTCGAACCTGCTGTGAAATACTGCTTTCATCTA
CCTCGTCCCAAGGCCCCCGCTTGCTGACAGGTTTCCCCGAATGCTTTACTTTAGACTGGC
TCCATCATAAAAGGATTTCAGGACAGCACGTCGGTGTCTCTCCCTCCTGATGCAGATGTC
ACGGCATTGTGTAGGGGCCCCAGCCAGCAGGGCAGGTAGATGTCATCCCTTCTTGTGTGG
CCATCCTTCATGGGCTGAGGTGCACCTGTGAAGCCAGATCCACCGCCCCGCCTCATTCTT
ACCATCGCCTCAAGACTTGACTGTCGCACCTGAGTCATCAGCTACCGAATAGAAGATCCT
TCCTCCACATTCTTTAGAAAAGGTCCACTGGGTTGAAAAACAGCTCTTCCGGGAGGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAAAATCATCTCTGAAAAACTGGTAACTATGCTTCCTTCCATTTTTAATCTTGCCCTA
ATATAAAATGTTTCTCGTTTCAGGGTAGGGAATGGAGAAATATTTCTAATCGTGTATTCA
TGTTCCAAAGGACTTGACATTCAACTTCCTGTTTCTTAGTTGATTATATTCCATGATGTG
CATATTACACGTGGTTTATAAGCTAAGCACTGGCTGTTTTTTTTTGTTCTCTTGTGAAAT
TGTATTTTTGTATGTTTCAACTAATTGTGATTGATTTGGCTTTTTTCTGGGTGACATAAA
GATTGCCAAACTCCATTTATAAATATATAAAACAAGAGTTCTATTTTAGCACAAAAGCAT
TTTATATTATTTATTGAATCCTTAGGTTTGTTTCCATCAAAAACATTCCTCAACACTTCT
GCTCCTTTTTATTTGTATAGTTTGTTATTTAAGGAAGGGCAGTCCTTTCTGTTGTGGGGT
TTTTTTTCCCCAACAAAATAAAACGGAAACAAAGCGTACAGCAATGTGGGGCAAACATCC
CGTCTCGCGGCCATGGACCGTTTTCATCAATGGCTTACCTTCCCATCTGTGCGAGAGGCA
AGGGCACTTCTTGGGGTGACATCTGACCTCGAACCTGCTGTGAAATACTGCTTTCATCTA
CCTCGTCCCAAGGCCCCCGCTTGCTGACAGGTTTCCCCGAATGCTTTACTTTAGACTGGC
TCCATCATAAAAGGATTTCAGGACAGCACGTCGGTGTCTCTCCCTCCTGATGCAGATGTC
ACGGCATTGTGTAGGGGCCCCAGCCAGCAGGGCAGGTAGATGTCATCCCTTCTTGTGTGG
CCATCCTTCATGGGCTGAGGTGCACCTGTGAAGCCAGATCCACCGCCCCGCCTCATTCTT
ACCATCGCCTCAAGACTTGACTGTCGCACCTGAGTCATCAGCTACCGAATAGAAGATCCT
TCCTCCACATTCTTTAGAAAAGGTCCACTGGGTTGAAAAACAGCTCTTCCGGGAGGAGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-237, + strand, RNAz p=0.875422

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-237, + strand, RNAz p=0.875422

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               2-1019, gnl|bosTau2|chr17 (40232298-40231286)
               

               
               2-1019, gnl|canFam2|chr26 (22541205-22542447)
               

               
               2-1019, gnl|dasNov1|scaffold_183496 (4295-2917)
               

               
               2-1019, gnl|hg17|chr22 (24448086-24449338)
               

               
               2-1019, gnl|Hg17|chr22 (24448209-24449214)
               

               
               2-1019, gnl|loxAfr1|scaffold_3648 (12284-10945)
               

               
               2-1019, gnl|mm7|chr5 (112097559-112096433)
               

               
               2-1019, gnl|oryCun1|scaffold_202644 (4343-5557)
               

               
               2-1019, gnl|panTro1|chr23 (24530720-24531971)
               

               
               2-1019, gnl|rheMac2|chr10 (69549236-69550490)
               

               
               2-1019, gnl|rn3|chrUn (51672828-51671694)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1019, gnl|bosTau2|chr17 (40232298-40231286)
               

               
               2-1019, gnl|canFam2|chr26 (22541205-22542447)
               

               
               2-1019, gnl|dasNov1|scaffold_183496 (4295-2917)
               

               
               2-1019, gnl|hg17|chr22 (24448086-24449338)
               

               
               2-1019, gnl|Hg17|chr22 (24448209-24449214)
               

               
               2-1019, gnl|loxAfr1|scaffold_3648 (12284-10945)
               

               
               2-1019, gnl|mm7|chr5 (112097559-112096433)
               

               
               2-1019, gnl|oryCun1|scaffold_202644 (4343-5557)
               

               
               2-1019, gnl|panTro1|chr23 (24530720-24531971)
               

               
               2-1019, gnl|rheMac2|chr10 (69549236-69550490)
               

               
               2-1019, gnl|rn3|chrUn (51672828-51671694)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fhi (0.169578)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               pgl (0.118483)

	2-1019, gnl\|bosTau2\|chr17 (40232298-40231286)
	2-1019, gnl\|canFam2\|chr26 (22541205-22542447)
	2-1019, gnl\|dasNov1\|scaffold_183496 (4295-2917)
	2-1019, gnl\|hg17\|chr22 (24448086-24449338)
	2-1019, gnl\|Hg17\|chr22 (24448209-24449214)
	2-1019, gnl\|loxAfr1\|scaffold_3648 (12284-10945)
	2-1019, gnl\|mm7\|chr5 (112097559-112096433)
	2-1019, gnl\|oryCun1\|scaffold_202644 (4343-5557)
	2-1019, gnl\|panTro1\|chr23 (24530720-24531971)
	2-1019, gnl\|rheMac2\|chr10 (69549236-69550490)
	2-1019, gnl\|rn3\|chrUn (51672828-51671694)