Ss1.1-Spl1-SPL010028E05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACTGGGTCTGCGGCGTGCGGCCCTCCCTGAGCTCCGTCCCGCGCGCACCGGGCCAAGA GTCCGACAGCGGCCTGCCTTCTCGACATGGCCGGCTCAGAGGCTGATTGGGTAACTGTTG CCAATAATCTTCTCTTGAAATGTCACATACACCTGAGGATTAGAGAACTAGAAGATTGTG ATGCTAATGTTTTTATTGCTCTTTATCAATCCATTTTGGGAGAAAAGGTACCAGACCTCA TAGCTATTCCCAGGAGTCAAGAGGACGAAGCTCACAATGTACAAGCAGTAATTGATTCGC TGGCTTTGGATTACCTGCAGGTCAGCTTGTCTCACATAACAGGAGAAAATATAGTGAAAG GAGATAAAGAATCTATTAAGAATCTCCTAGAAATATTTGATGGGTTGCTGGAGTATCTAA CAGAACACAGTGAAACATCTCACGAGAAAAGTGAAACTGGACAGAGTTTTAAAGAGTCCC ATCAAGGAGAACCTATAGAAGAGCCAGAAAGTACTAAAGAATCCAGATCATCATGGAAAA GAGTTTCTTTTGAGAGGTGTTCCTTGTCGTCTGAGGTGTTGGGCCCCTCTTGGGATGGAG ATGAAGCGGAATCTACAGGTGAAATAATTAGACTTGGAGACACAGCACATACCTTTTCTC TGAGAAGTAATGGTGCCCAAGGTACCAACGAAATGCAGTCTAAAAAAGACCTAACTCTAC CATGTTCTAACTCACATGAAGAAGTGTTGAATCTCCCTTCATCGAGTTTTTTGTCCAGGA GTAGAACATCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACTGGGTCTGCGGCGTGCGGCCCTCCCTGAGCTCCGTCCCGCGCGCACCGGGCCAAGA GTCCGACAGCGGCCTGCCTTCTCGACATGGCCGGCTCAGAGGCTGATTGGGTAACTGTTG CCAATAATCTTCTCTTGAAATGTCACATACACCTGAGGATTAGAGAACTAGAAGATTGTG ATGCTAATGTTTTTATTGCTCTTTATCAATCCATTTTGGGAGAAAAGGTACCAGACCTCA TAGCTATTCCCAGGAGTCAAGAGGACGAAGCTCACAATGTACAAGCAGTAATTGATTCGC TGGCTTTGGATTACCTGCAGGTCAGCTTGTCTCACATAACAGGAGAAAATATAGTGAAAG GAGATAAAGAATCTATTAAGAATCTCCTAGAAATATTTGATGGGTTGCTGGAGTATCTAA CAGAACACAGTGAAACATCTCACGAGAAAAGTGAAACTGGACAGAGTTTTAAAGAGTCCC ATCAAGGAGAACCTATAGAAGAGCCAGAAAGTACTAAAGAATCCAGATCATCATGGAAAA GAGTTTCTTTTGAGAGGTGTTCCTTGTCGTCTGAGGTGTTGGGCCCCTCTTGGGATGGAG ATGAAGCGGAATCTACAGGTGAAATAATTAGACTTGGAGACACAGCACATACCTTTTCTC TGAGAAGTAATGGTGCCCAAGGTACCAACGAAATGCAGTCTAAAAAAGACCTAACTCTAC CATGTTCTAACTCACATGAAGAAGTGTTGAATCTCCCTTCATCGAGTTTTTTGTCCAGGA GTAGAACATCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 340-452, + strand, RNAz p=0.871385 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 340-452, + strand, RNAz p=0.871385 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 105-234, gnl|bosTau2|chr19 (42632125-42632254) | |
| 105-234, gnl|Hg17|chr17 (59935171-59935300) | |
| 105-234, gnl|Mm7|chr11 (106899771-106899900) | |
| 340-452, gnl|bosTau2|chr19 (42636347-42636462) | |
| 340-452, gnl|canFam2|chr9 (15442805-15442907) | |
| 340-452, gnl|echTel1|scaffold_309177 (76265-76163) | |
| 340-452, gnl|fr1|chrUn (248466883-248466781) | |
| 340-452, gnl|galGal2|chr18 (6699953-6700055) | |
| 340-452, gnl|hg17|chr17 (59940820-59940922) | |
| 340-452, gnl|Hg17|chr17 (59940825-59940940) | |
| 340-452, gnl|loxAfr1|scaffold_7204 (39537-39435) | |
| 340-452, gnl|mm7|chr11 (106905156-106905258) | |
| 340-452, gnl|Mm7|chr11 (106905161-106905276) | |
| 340-452, gnl|monDom2|scaffold_18 (16819693-16819792) | |
| 340-452, gnl|oryCun1|scaffold_199451 (34433-34331) | |
| 340-452, gnl|panTro1|chr19 (45196284-45196182) | |
| 340-452, gnl|rheMac2|chr16 (60058518-60058620) | |
| 340-452, gnl|rn3|chr10 (96159669-96159771) | |
| 340-452, gnl|tetNig1|chr18 (1396558-1396654) | |
| 555-675, gnl|bosTau2|chr19 (42641939-42642059) | |
| 555-675, gnl|Hg17|chr17 (59945899-59946019) | |
| 555-675, gnl|Mm7|chr11 (106910502-106910622) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 105-234, gnl|bosTau2|chr19 (42632125-42632254) | |
| 105-234, gnl|Hg17|chr17 (59935171-59935300) | |
| 105-234, gnl|Mm7|chr11 (106899771-106899900) | |
| 340-452, gnl|bosTau2|chr19 (42636347-42636462) | |
| 340-452, gnl|canFam2|chr9 (15442805-15442907) | |
| 340-452, gnl|echTel1|scaffold_309177 (76265-76163) | |
| 340-452, gnl|fr1|chrUn (248466883-248466781) | |
| 340-452, gnl|galGal2|chr18 (6699953-6700055) | |
| 340-452, gnl|hg17|chr17 (59940820-59940922) | |
| 340-452, gnl|Hg17|chr17 (59940825-59940940) | |
| 340-452, gnl|loxAfr1|scaffold_7204 (39537-39435) | |
| 340-452, gnl|mm7|chr11 (106905156-106905258) | |
| 340-452, gnl|Mm7|chr11 (106905161-106905276) | |
| 340-452, gnl|monDom2|scaffold_18 (16819693-16819792) | |
| 340-452, gnl|oryCun1|scaffold_199451 (34433-34331) | |
| 340-452, gnl|panTro1|chr19 (45196284-45196182) | |
| 340-452, gnl|rheMac2|chr16 (60058518-60058620) | |
| 340-452, gnl|rn3|chr10 (96159669-96159771) | |
| 340-452, gnl|tetNig1|chr18 (1396558-1396654) | |
| 555-675, gnl|bosTau2|chr19 (42641939-42642059) | |
| 555-675, gnl|Hg17|chr17 (59945899-59946019) | |
| 555-675, gnl|Mm7|chr11 (106910502-106910622) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.124347) |