Non-Coding RNA Search

Ss1.1-Spl1-SPL010035H09.5

Sequence:


               
               GTGAAAAAAAGTGAAAGTGAAAAAAAACGCAGAGTAAAATCTATTTCACTACTTGGTTCC
CTTTTCTTCCCCTTGTTGTGATTTAAGCAGTGTGTATTTGACATCTCCACACTGTCCCAG
AGACAGTGGTGTTCTACAATATTGTTATCATGTATGATGTTTTATTGGTGCTTTTTATTC
ATAGTGGTTTCTTACCGGAAACAGTAGGAAGACACACATGAACTGTGTACAAGAAATGAA
ACATTGCTGCTGATATGTTTTGTTTTGTTTTTTCCACATGCTTTTTGAGTTTTTCACTTT
TTAAACAAGGGCCAGCAAGCAAAACAGACGCTGCTGGGTCTGCCTGCAGAGGGCGGCTGT
TTGCACCAAGCTCTCCAACCCTGGGTATTGATGTCCCTTTTTGGTACTCGGGATTGGAGC
CGCAGCTGGGGCCCCTTCCCTTTCGTCTGAAGAGACACTGAGGGAAACATGGTTTTCTTT
TGAGGTGTCGTTGGCTGCCTTTTAGGGACTGGGAGCCTTCTCCCATCTTCTGTTCTTCTG
CACCTCTTGTGCAAGTGTGCAGTGCCAGTGCACGGTTTGCAGATGTGCTTCCCCCGCCTG
GAACCGGGATCTCTCCGAGAGCCTGGGCTGGGGGCTGAGCTGGGTTGAATGCGCCAGCAG
GCAACGAGGAGGGCAGCCTGGGGAGGAGGAGCAGCCCCCATCTCGGTGGCCCTCTGCGCA
TGTCCCAGGCAGGCGGCCCAGGCTCAGCCTCCGGTGCAGGGAAGCAGCCTACCCAAGGCG
CTCGGGCGTGCCTGTTACAAGAAGGCCCTGCGGAAGGATAATTTGCACATGGGGCTGTGA
TAACACTAATGTTGATGTTTTGTTTCACAAGTCATCAGAGATGTTTGCAAAGTGAGGTTT
GTTTTTTTTTTAATTCCTTTATCTTTACTTAAAGGTGAATGTGTATTCCTCTGGGAGGAA
TAGGAAGAAAACAGGAATGTTAATAATGTCAAGCAGAAGACTTCCTCCCTTATTAATATA
TAACCCTCATGTATTTATGCCTAATGTAAGCTGACTTTTAAAAAGCTTTCTTTTGTTGCA
TGCCCCGTGCAGGCATCCCTCTTGTACATGCATGCCTTTCGTCCTGTTTTCCTGTATAAA
GTTAGTGAACAAAGAACTATTTTTGCCTAGTTCATGTTGCCAAGCAATGCATATTTTTTA
AATTTGTCATATATGGAAATAGCATGTTTGTTACATGTAAAAGCTTTACTGATATACAGA
TATACTAATGTTTGAAGATGCTGTTCTTTGCAAGTGTACAGTTTTCAAATGTTGTTACCA
GTGAAACACCCTTGTGGTTTAAACTTGCTACAATGTATTTATTACTCATTTCCTCCCATG
TAACTAAGAATCATGGCTATATTTCATATCAACGTTATATTGAAAGTGAAGGGAAATGAT
TAATACAAGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAAAAAAGTGAAAGTGAAAAAAAACGCAGAGTAAAATCTATTTCACTACTTGGTTCC
CTTTTCTTCCCCTTGTTGTGATTTAAGCAGTGTGTATTTGACATCTCCACACTGTCCCAG
AGACAGTGGTGTTCTACAATATTGTTATCATGTATGATGTTTTATTGGTGCTTTTTATTC
ATAGTGGTTTCTTACCGGAAACAGTAGGAAGACACACATGAACTGTGTACAAGAAATGAA
ACATTGCTGCTGATATGTTTTGTTTTGTTTTTTCCACATGCTTTTTGAGTTTTTCACTTT
TTAAACAAGGGCCAGCAAGCAAAACAGACGCTGCTGGGTCTGCCTGCAGAGGGCGGCTGT
TTGCACCAAGCTCTCCAACCCTGGGTATTGATGTCCCTTTTTGGTACTCGGGATTGGAGC
CGCAGCTGGGGCCCCTTCCCTTTCGTCTGAAGAGACACTGAGGGAAACATGGTTTTCTTT
TGAGGTGTCGTTGGCTGCCTTTTAGGGACTGGGAGCCTTCTCCCATCTTCTGTTCTTCTG
CACCTCTTGTGCAAGTGTGCAGTGCCAGTGCACGGTTTGCAGATGTGCTTCCCCCGCCTG
GAACCGGGATCTCTCCGAGAGCCTGGGCTGGGGGCTGAGCTGGGTTGAATGCGCCAGCAG
GCAACGAGGAGGGCAGCCTGGGGAGGAGGAGCAGCCCCCATCTCGGTGGCCCTCTGCGCA
TGTCCCAGGCAGGCGGCCCAGGCTCAGCCTCCGGTGCAGGGAAGCAGCCTACCCAAGGCG
CTCGGGCGTGCCTGTTACAAGAAGGCCCTGCGGAAGGATAATTTGCACATGGGGCTGTGA
TAACACTAATGTTGATGTTTTGTTTCACAAGTCATCAGAGATGTTTGCAAAGTGAGGTTT
GTTTTTTTTTTAATTCCTTTATCTTTACTTAAAGGTGAATGTGTATTCCTCTGGGAGGAA
TAGGAAGAAAACAGGAATGTTAATAATGTCAAGCAGAAGACTTCCTCCCTTATTAATATA
TAACCCTCATGTATTTATGCCTAATGTAAGCTGACTTTTAAAAAGCTTTCTTTTGTTGCA
TGCCCCGTGCAGGCATCCCTCTTGTACATGCATGCCTTTCGTCCTGTTTTCCTGTATAAA
GTTAGTGAACAAAGAACTATTTTTGCCTAGTTCATGTTGCCAAGCAATGCATATTTTTTA
AATTTGTCATATATGGAAATAGCATGTTTGTTACATGTAAAAGCTTTACTGATATACAGA
TATACTAATGTTTGAAGATGCTGTTCTTTGCAAGTGTACAGTTTTCAAATGTTGTTACCA
GTGAAACACCCTTGTGGTTTAAACTTGCTACAATGTATTTATTACTCATTTCCTCCCATG
TAACTAAGAATCATGGCTATATTTCATATCAACGTTATATTGAAAGTGAAGGGAAATGAT
TAATACAAGGTT

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               157-270, - strand, RNAz p=0.535864
               

               
               610-728, - strand, RNAz p=0.692426
               

               
               809-1009, - strand, RNAz p=0.980619
               

               
               1329-1452, + strand, RNAz p=0.944478

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-270, - strand, RNAz p=0.535864
               

               
               610-728, - strand, RNAz p=0.692426
               

               
               809-1009, - strand, RNAz p=0.980619
               

               
               1329-1452, + strand, RNAz p=0.944478

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               22-1452, gnl|bosTau2|chr10 (45844261-45842834)
               

               
               22-1452, gnl|Hg17|chr14 (54328387-54329772)
               

               
               22-1452, gnl|Mm7|chr14 (42425529-42426916)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-1452, gnl|bosTau2|chr10 (45844261-45842834)
               

               
               22-1452, gnl|Hg17|chr14 (54328387-54329772)
               

               
               22-1452, gnl|Mm7|chr14 (42425529-42426916)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               vin (0.332557)
               

               
               isp (0.300752)
               

               
               eru (0.240096)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               eru (0.240096)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	157-270, - strand, RNAz p=0.535864
	610-728, - strand, RNAz p=0.692426
	809-1009, - strand, RNAz p=0.980619
	1329-1452, + strand, RNAz p=0.944478

	22-1452, gnl\|bosTau2\|chr10 (45844261-45842834)
	22-1452, gnl\|Hg17\|chr14 (54328387-54329772)
	22-1452, gnl\|Mm7\|chr14 (42425529-42426916)

	vin (0.332557)
	isp (0.300752)
	eru (0.240096)
	hea (0.204499)
	aor (0.195274)
	rec (0.17307)
	fhi (0.169578)
	nco (0.161734)
	bfe (0.149858)
	hyp (0.142837)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	ste (0.135208)
	ova (0.129132)
	bla (0.124347)
	eep (0.122564)
	ebs (0.118301)