Non-Coding RNA Search

Ss1.1-Spl1-SPL010036F07.5

Sequence:


               
               AAAAAGCAACAAGAAGGAAGAGCAATGGCGACACTGGATCGCAAAGTGCCCAGTCCGGAG
GCGTTTCTGGGCAAACCCTGGTCCTCCTGGATCGACGCCGCCAAATTACACTGCTCCGAC
AATGTAGATTTAGAAGAGGCTGGAAAAGAGGGTGGAAAAAGCAGGGAGGTTATGAGGCTT
AATAAAGAAGATATGCACTTGTTTGGCCACTACCCAGCACACGACGACTTCTACCTCGTG
GTGTGCAGTGCCTGTAACCAGGTCGTCAAGCCGCAGGTCTTCCAGTCCCACTGTGGGAGA
AAGCAAGACAAGAGAAATGAAGGCATCTTCAGGAATGGACCGGAGAACAGCCAAGCCATA
GAGAAGAAGCAGGTGTAAAAGGGACAATGCAGAAGACAGACTCAGCTTCTGAAAGAGCTC
GGAGGACTGCCACAGTCTGGAGAAGGCTTCCCGGAAGAGGAGACTGCGCAGAGCCCGGAA
GTGTGGACAAGCTTCCATGTACCGCAAATTCGTGAGCACCCTCTGGTGACAGGGTTTAGG
GAGAAAACGGGCTGGAGCAGAGCAGAGGGCACCCAGGGGATTCTTCTCTCCATTTCCACC
ACCACCACCACCCTGGTCCAAGCTGTCATCACCTCTCGCCTGGACAACCACAAAAGCCCT
CCAGCTGTTTTCCCTGCTTCCACTCTTGCTCCCGTACAGTTCATTCTGCACACAGAAGGT
AGAATCAAAACAATTAATTGTATCATCTTCTTAACTTGTGGCTGCCCATTGCTCTTAAGC
TAAAAGTAAAAATCCCTGCCATGGCCACAAAGTCTTGCGTGATCTGAAGCACATCCTATG
CCGGGCTCCCTTTCACTCTGTACATGCCAGTCAAGCTAGTCTTTAAAATTTCAGCACATT
GGGTCTTCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGCAACAAGAAGGAAGAGCAATGGCGACACTGGATCGCAAAGTGCCCAGTCCGGAG
GCGTTTCTGGGCAAACCCTGGTCCTCCTGGATCGACGCCGCCAAATTACACTGCTCCGAC
AATGTAGATTTAGAAGAGGCTGGAAAAGAGGGTGGAAAAAGCAGGGAGGTTATGAGGCTT
AATAAAGAAGATATGCACTTGTTTGGCCACTACCCAGCACACGACGACTTCTACCTCGTG
GTGTGCAGTGCCTGTAACCAGGTCGTCAAGCCGCAGGTCTTCCAGTCCCACTGTGGGAGA
AAGCAAGACAAGAGAAATGAAGGCATCTTCAGGAATGGACCGGAGAACAGCCAAGCCATA
GAGAAGAAGCAGGTGTAAAAGGGACAATGCAGAAGACAGACTCAGCTTCTGAAAGAGCTC
GGAGGACTGCCACAGTCTGGAGAAGGCTTCCCGGAAGAGGAGACTGCGCAGAGCCCGGAA
GTGTGGACAAGCTTCCATGTACCGCAAATTCGTGAGCACCCTCTGGTGACAGGGTTTAGG
GAGAAAACGGGCTGGAGCAGAGCAGAGGGCACCCAGGGGATTCTTCTCTCCATTTCCACC
ACCACCACCACCCTGGTCCAAGCTGTCATCACCTCTCGCCTGGACAACCACAAAAGCCCT
CCAGCTGTTTTCCCTGCTTCCACTCTTGCTCCCGTACAGTTCATTCTGCACACAGAAGGT
AGAATCAAAACAATTAATTGTATCATCTTCTTAACTTGTGGCTGCCCATTGCTCTTAAGC
TAAAAGTAAAAATCCCTGCCATGGCCACAAAGTCTTGCGTGATCTGAAGCACATCCTATG
CCGGGCTCCCTTTCACTCTGTACATGCCAGTCAAGCTAGTCTTTAAAATTTCAGCACATT
GGGTCTTCCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21312374|ref|NP_082415.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21312374|ref|NP_082415.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-110, - strand, RNAz p=0.775039

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-110, - strand, RNAz p=0.775039

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-121, gnl|bosTau2|chr4 (23862730-23862850)
               

               
               1-121, gnl|canFam2|chr18 (17566204-17566113)
               

               
               1-121, gnl|dasNov1|scaffold_105200 (1021-928)
               

               
               1-121, gnl|echTel1|scaffold_263669 (6090-6181)
               

               
               1-121, gnl|fr1|chrUn (135215702-135215611)
               

               
               1-121, gnl|galGal2|chr1 (9561535-9561465)
               

               
               1-121, gnl|hg17|chr7 (105110771-105110862)
               

               
               1-121, gnl|Hg17|chr7 (105110895-105110775)
               

               
               1-121, gnl|mm7|chr12 (30987496-30987405)
               

               
               1-121, gnl|Mm7|chr12 (30987370-30987490)
               

               
               1-121, gnl|monDom2|scaffold_30 (32103044-32103135)
               

               
               1-121, gnl|panTro1|chr6 (107008955-107009046)
               

               
               1-121, gnl|rheMac2|chr3 (143295535-143295626)
               

               
               1-121, gnl|rn3|chr6 (51497923-51497832)
               

               
               1-121, gnl|tetNig1|chr19 (3847721-3847812)
               

               
               1-121, gnl|xenTro1|scaffold_61 (2735188-2735279)
               


               
               295-912, gnl|bosTau2|chr4 (23981457-23982076)
               

               
               295-912, gnl|Hg17|chr7 (104995861-104995242)
               

               
               295-912, gnl|Mm7|chr12 (31089425-31090141)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-121, gnl|bosTau2|chr4 (23862730-23862850)
               

               
               1-121, gnl|canFam2|chr18 (17566204-17566113)
               

               
               1-121, gnl|dasNov1|scaffold_105200 (1021-928)
               

               
               1-121, gnl|echTel1|scaffold_263669 (6090-6181)
               

               
               1-121, gnl|fr1|chrUn (135215702-135215611)
               

               
               1-121, gnl|galGal2|chr1 (9561535-9561465)
               

               
               1-121, gnl|hg17|chr7 (105110771-105110862)
               

               
               1-121, gnl|Hg17|chr7 (105110895-105110775)
               

               
               1-121, gnl|mm7|chr12 (30987496-30987405)
               

               
               1-121, gnl|Mm7|chr12 (30987370-30987490)
               

               
               1-121, gnl|monDom2|scaffold_30 (32103044-32103135)
               

               
               1-121, gnl|panTro1|chr6 (107008955-107009046)
               

               
               1-121, gnl|rheMac2|chr3 (143295535-143295626)
               

               
               1-121, gnl|rn3|chr6 (51497923-51497832)
               

               
               1-121, gnl|tetNig1|chr19 (3847721-3847812)
               

               
               1-121, gnl|xenTro1|scaffold_61 (2735188-2735279)
               


               
               295-912, gnl|bosTau2|chr4 (23981457-23982076)
               

               
               295-912, gnl|Hg17|chr7 (104995861-104995242)
               

               
               295-912, gnl|Mm7|chr12 (31089425-31090141)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ssp (0.13552)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               cty (0.10408)

	1-121, gnl\|bosTau2\|chr4 (23862730-23862850)
	1-121, gnl\|canFam2\|chr18 (17566204-17566113)
	1-121, gnl\|dasNov1\|scaffold_105200 (1021-928)
	1-121, gnl\|echTel1\|scaffold_263669 (6090-6181)
	1-121, gnl\|fr1\|chrUn (135215702-135215611)
	1-121, gnl\|galGal2\|chr1 (9561535-9561465)
	1-121, gnl\|hg17\|chr7 (105110771-105110862)
	1-121, gnl\|Hg17\|chr7 (105110895-105110775)
	1-121, gnl\|mm7\|chr12 (30987496-30987405)
	1-121, gnl\|Mm7\|chr12 (30987370-30987490)
	1-121, gnl\|monDom2\|scaffold_30 (32103044-32103135)
	1-121, gnl\|panTro1\|chr6 (107008955-107009046)
	1-121, gnl\|rheMac2\|chr3 (143295535-143295626)
	1-121, gnl\|rn3\|chr6 (51497923-51497832)
	1-121, gnl\|tetNig1\|chr19 (3847721-3847812)
	1-121, gnl\|xenTro1\|scaffold_61 (2735188-2735279)

	295-912, gnl\|bosTau2\|chr4 (23981457-23982076)
	295-912, gnl\|Hg17\|chr7 (104995861-104995242)
	295-912, gnl\|Mm7\|chr12 (31089425-31090141)