Ss1.1-Spl1-SPL010036H07.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGGCGGAGCGAGCGGGCCAGCGATCGGGTGAGCGCGCGGCCGGGGCTCTTGGGCCCGG GGCGGGGTCGGCGCGGAGCAGCGGCGGGGAGCTCGTGCGGAGAACCGGCGGGGCGGCCCG GCCCGGCCCCGCGCCCGCGCCCATGACGGCGGCCGTGCTCCGGGAGGGCGTGCTGGAGAA GCGCAGTGGCGGGCTGCTGCAGTTGTGGAAGCGCAAGCGTTGCGTGCTCACCGAGCGCGG GCTGCAGCTCTTCGAGGCCAAGGGCGCGGGCGGCCGTCCCAAGGAGCTGAGTTTCGCCCG CATCAAGGCGGTGGAGTGCGTGGAGAGCACGGGGCGCCACATCTACTTCACGCTGGTGAC CGAGGGCGGCGGCGAGATCGACTTCCGCTGCCCGCTCGAGGACCCCGGCTGGAACGCGCA GATCACCCTGGGCCTGGTCAAGTTCAAGAACCAGCAGGCTATCCAGACGGTGCGCGCGCG GCAGAGCCTGGGGGCCGGGACCCTGGTGTCTTAAGCCGCGGACGGACGTCTCCGCTCCAC GCGGCCCATTGACGCAGCGCGGAGGTGGTGTCAGCCCCCTGCCTCTCCAGCTTTTGCGGG CCGACTGCCCCATCGGGCAGGGTGGAAGCCATGGACGCGTGGAAGAGGCGTGGGAACCTA AGCCTTGCCGGGCCTGGGAGGAGGGCAGATGGCCACGTGGGGCTGAGGATGAAGATTCAG CCCTTGTAGATGCAGACTCTCGGGATGGACCAGCTCAGACCTTGCAGCCACCTGCCTGGC CTCCGAGATGGTGACGGGAGCTGGCATCACAGACCCCTCCCGCCATGCCCTGCCATCTGT CCTGCAGACTACTCTTGGTCCCCGGGCTTGGGCCATGCCTGGAGGAAGGCAGACCCCCGG GGGCGCTCAGCCAGCGCCTCAGGACTCAGGAGGCCAGCCTGACGCTCAGAAGAGGAAACT CCCCACCCCAACTCCCCTCTGGATTCACTTTGGCGGGGGTCACTGATGGGCCTGCGGCCC ACGCTTTGGGGTCGTCTGCTGCTTGGGTCCTTCTGGGACCCCCACCCATTCAGGCCTCTC TTTGCACAGTTCTTCCCCCTCCTGCCCATCTTCTCCCCACTGCAGTGCTAGGCCTGGAGG TGGTGGGGGTGGTCGGGGGTTCAGCCATTACCATTTCATTACCATTTCATGCCTATCCCA ACCCGCAGCCGCTCTGCCTGCAAAGGCAGCGCTCACACTGTTCACTGAATGAAATTCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGGCGGAGCGAGCGGGCCAGCGATCGGGTGAGCGCGCGGCCGGGGCTCTTGGGCCCGG GGCGGGGTCGGCGCGGAGCAGCGGCGGGGAGCTCGTGCGGAGAACCGGCGGGGCGGCCCG GCCCGGCCCCGCGCCCGCGCCCATGACGGCGGCCGTGCTCCGGGAGGGCGTGCTGGAGAA GCGCAGTGGCGGGCTGCTGCAGTTGTGGAAGCGCAAGCGTTGCGTGCTCACCGAGCGCGG GCTGCAGCTCTTCGAGGCCAAGGGCGCGGGCGGCCGTCCCAAGGAGCTGAGTTTCGCCCG CATCAAGGCGGTGGAGTGCGTGGAGAGCACGGGGCGCCACATCTACTTCACGCTGGTGAC CGAGGGCGGCGGCGAGATCGACTTCCGCTGCCCGCTCGAGGACCCCGGCTGGAACGCGCA GATCACCCTGGGCCTGGTCAAGTTCAAGAACCAGCAGGCTATCCAGACGGTGCGCGCGCG GCAGAGCCTGGGGGCCGGGACCCTGGTGTCTTAAGCCGCGGACGGACGTCTCCGCTCCAC GCGGCCCATTGACGCAGCGCGGAGGTGGTGTCAGCCCCCTGCCTCTCCAGCTTTTGCGGG CCGACTGCCCCATCGGGCAGGGTGGAAGCCATGGACGCGTGGAAGAGGCGTGGGAACCTA AGCCTTGCCGGGCCTGGGAGGAGGGCAGATGGCCACGTGGGGCTGAGGATGAAGATTCAG CCCTTGTAGATGCAGACTCTCGGGATGGACCAGCTCAGACCTTGCAGCCACCTGCCTGGC CTCCGAGATGGTGACGGGAGCTGGCATCACAGACCCCTCCCGCCATGCCCTGCCATCTGT CCTGCAGACTACTCTTGGTCCCCGGGCTTGGGCCATGCCTGGAGGAAGGCAGACCCCCGG GGGCGCTCAGCCAGCGCCTCAGGACTCAGGAGGCCAGCCTGACGCTCAGAAGAGGAAACT CCCCACCCCAACTCCCCTCTGGATTCACTTTGGCGGGGGTCACTGATGGGCCTGCGGCCC ACGCTTTGGGGTCGTCTGCTGCTTGGGTCCTTCTGGGACCCCCACCCATTCAGGCCTCTC TTTGCACAGTTCTTCCCCCTCCTGCCCATCTTCTCCCCACTGCAGTGCTAGGCCTGGAGG TGGTGGGGGTGGTCGGGGGTTCAGCCATTACCATTTCATTACCATTTCATGCCTATCCCA ACCCGCAGCCGCTCTGCCTGCAAAGGCAGCGCTCACACTGTTCACTGAATGAAATTCTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1042-1151, - strand, RNAz p=0.958026 | |
| 1046-1159, - strand, RNAz p=0.6685 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1042-1151, - strand, RNAz p=0.958026 | |
| 1046-1159, - strand, RNAz p=0.6685 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 155-466, gnl|bosTau2|chr29 (43758340-43758035) | |
| 155-466, gnl|canFam2|chr15 (22135095-22135411) | |
| 155-466, gnl|danRer3|chrUn (146002492-146002266) | |
| 155-466, gnl|dasNov1|scaffold_28158 (6301-6524) | |
| 155-466, gnl|echTel1|scaffold_194309 (7018-6802) | |
| 155-466, gnl|fr1|chrUn (6653390-6653159) | |
| 155-466, gnl|galGal2|chr5 (10708491-10708276) | |
| 155-466, gnl|hg17|chr11 (2906830-2907042) | |
| 155-466, gnl|Hg17|chr11 (2907152-2906847) | |
| 155-466, gnl|loxAfr1|scaffold_10693 (64347-64135) | |
| 155-466, gnl|mm7|chr7 (139929397-139929609) | |
| 155-466, gnl|Mm7|chr7 (139929719-139929417) | |
| 155-466, gnl|monDom2|scaffold_33 (28369463-28369282) | |
| 155-466, gnl|oryCun1|scaffold_200018 (6444-6155) | |
| 155-466, gnl|panTro1|chr9 (3091880-3092092) | |
| 155-466, gnl|rheMac2|chr14 (2938090-2938302) | |
| 155-466, gnl|rn3|chr1 (204032114-204032326) | |
| 155-466, gnl|tetNig1|chrUn_random (25673397-25673162) | |
| 155-466, gnl|xenTro1|scaffold_629 (648494-648709) | |
| 1016-1178, gnl|bosTau2|chr16 (47196477-47196315) | |
| 1016-1178, gnl|canFam2|chr7 (4435781-4435474) | |
| 1016-1178, gnl|dasNov1|scaffold_31303 (4268-3973) | |
| 1016-1178, gnl|echTel1|scaffold_194309 (9925-9623) | |
| 1016-1178, gnl|hg17|chr1 (198166275-198166601) | |
| 1016-1178, gnl|Hg17|chr1 (198166489-198166324) | |
| 1016-1178, gnl|loxAfr1|scaffold_8152 (30135-29833) | |
| 1016-1178, gnl|mm7|chr1 (135655137-135654821) | |
| 1016-1178, gnl|Mm7|chr1 (135654909-135655085) | |
| 1016-1178, gnl|monDom2|scaffold_13 (915284-915603) | |
| 1016-1178, gnl|oryCun1|scaffold_191523 (8491-8185) | |
| 1016-1178, gnl|panTro1|chr1 (180857002-180857327) | |
| 1016-1178, gnl|rheMac2|chr1 (169033716-169033390) | |
| 1016-1178, gnl|rn3|chr13 (48808050-48807732) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 155-466, gnl|bosTau2|chr29 (43758340-43758035) | |
| 155-466, gnl|canFam2|chr15 (22135095-22135411) | |
| 155-466, gnl|danRer3|chrUn (146002492-146002266) | |
| 155-466, gnl|dasNov1|scaffold_28158 (6301-6524) | |
| 155-466, gnl|echTel1|scaffold_194309 (7018-6802) | |
| 155-466, gnl|fr1|chrUn (6653390-6653159) | |
| 155-466, gnl|galGal2|chr5 (10708491-10708276) | |
| 155-466, gnl|hg17|chr11 (2906830-2907042) | |
| 155-466, gnl|Hg17|chr11 (2907152-2906847) | |
| 155-466, gnl|loxAfr1|scaffold_10693 (64347-64135) | |
| 155-466, gnl|mm7|chr7 (139929397-139929609) | |
| 155-466, gnl|Mm7|chr7 (139929719-139929417) | |
| 155-466, gnl|monDom2|scaffold_33 (28369463-28369282) | |
| 155-466, gnl|oryCun1|scaffold_200018 (6444-6155) | |
| 155-466, gnl|panTro1|chr9 (3091880-3092092) | |
| 155-466, gnl|rheMac2|chr14 (2938090-2938302) | |
| 155-466, gnl|rn3|chr1 (204032114-204032326) | |
| 155-466, gnl|tetNig1|chrUn_random (25673397-25673162) | |
| 155-466, gnl|xenTro1|scaffold_629 (648494-648709) | |
| 1016-1178, gnl|bosTau2|chr16 (47196477-47196315) | |
| 1016-1178, gnl|canFam2|chr7 (4435781-4435474) | |
| 1016-1178, gnl|dasNov1|scaffold_31303 (4268-3973) | |
| 1016-1178, gnl|echTel1|scaffold_194309 (9925-9623) | |
| 1016-1178, gnl|hg17|chr1 (198166275-198166601) | |
| 1016-1178, gnl|Hg17|chr1 (198166489-198166324) | |
| 1016-1178, gnl|loxAfr1|scaffold_8152 (30135-29833) | |
| 1016-1178, gnl|mm7|chr1 (135655137-135654821) | |
| 1016-1178, gnl|Mm7|chr1 (135654909-135655085) | |
| 1016-1178, gnl|monDom2|scaffold_13 (915284-915603) | |
| 1016-1178, gnl|oryCun1|scaffold_191523 (8491-8185) | |
| 1016-1178, gnl|panTro1|chr1 (180857002-180857327) | |
| 1016-1178, gnl|rheMac2|chr1 (169033716-169033390) | |
| 1016-1178, gnl|rn3|chr13 (48808050-48807732) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| jca (0.34188) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ute (0.132784) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.34188) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ute (0.132784) |