Ss1.1-Spl1-SPL010037C06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGCTGGGTGACGTCACCCGCCAACATGGCGGCGGCGGTAGATTAGGGCTGTGGGTCGGA GCCGCCGCCTCCACCACCGCCGAGGGTTTCTGTCGCGAGCAGCCGCTGCCACCGCCGCGT CTTTCACCTTTTCTGGGGCAGGGGCCTGGGCCAGGTTTTGCACATCTGTAAGTAGACCTT TGTGGAGCTCTGCCAGTCAACCCCATGGCGTCCTCTACTACTGTGCCTCTAGGATTTCAC TATGAAACAAAGTATGTCGTTCTCAGCTACTTGGGACTCCTCTCTCAGGAGAAGCTGCAG GAACATCTTTCCCTACCCCAAGGAGTTCAGCAAGATATAGCCTCACAACCTCTGGATCCA GAAGTTTTATTAAAAGTTAAAACTGAAATTGAAGAAGAGCTAAAATCCCTGGACAAAGAA ATTTCCGAAGCCTTCACCAGCACAGGCTTCGACCGCCACACTTCTCCTGTGTTCAGCCCT GCCAACCCTGAAAGCTCCGTAGAAGACTGCTTGGCTCACCTTGGGGAGAAAGCATCACAG GAACTGAAAGTGCCTCTGCTTGGAGCCTTGCAGGTGCTCCTCAGCCGGTGAGTCCTCACT GGGGCCCGTCCCCACATGGATGCACTTCTCTCTGGGCTTCTCCACAGCTAGGGCTTTGTT TTAGGTGAACAGTGTCACTGCCTTTATTTACTTTTTGAGTTAACAAGACGTGGTCAAGAA CCTTTGGGTGCTTTGCTGCAGTTTGGTGTGACATACCTGGAGGACCACGCCGCCGAGTAC ATCATTCAACAAGGTGGCTGGGGCACTGTCTTTAACCTGGAGTCGGAGGATGAGGAGTGC CCTGCGGGCACC------------AACGACATCTACATCCTACCCAGCGACAGCTCTGCA CACGTCAGTCCCCCAGAATCGCCAACAGCAGCCGCTTCCTGGCAGGCAGAGAGCTTACCC GTCTCGCTGTCGGCCAGCCAGAGCTGGCACACAGAGAGCATGCCGGTGTCCCTGGGTCCC GAGTCTTGGCAGCAGGTCACGGTGGACCCTGAAGAAGTGAAAAGCTTGGACAGCAACGGG GCCGGAGAGAAGAGTGAGAACAACTCCTCAAACTCCGACATCGTACACGTGGAGAAGGAG GAGATACCTGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGCTGGGTGACGTCACCCGCCAACATGGCGGCGGCGGTAGATTAGGGCTGTGGGTCGGA GCCGCCGCCTCCACCACCGCCGAGGGTTTCTGTCGCGAGCAGCCGCTGCCACCGCCGCGT CTTTCACCTTTTCTGGGGCAGGGGCCTGGGCCAGGTTTTGCACATCTGTAAGTAGACCTT TGTGGAGCTCTGCCAGTCAACCCCATGGCGTCCTCTACTACTGTGCCTCTAGGATTTCAC TATGAAACAAAGTATGTCGTTCTCAGCTACTTGGGACTCCTCTCTCAGGAGAAGCTGCAG GAACATCTTTCCCTACCCCAAGGAGTTCAGCAAGATATAGCCTCACAACCTCTGGATCCA GAAGTTTTATTAAAAGTTAAAACTGAAATTGAAGAAGAGCTAAAATCCCTGGACAAAGAA ATTTCCGAAGCCTTCACCAGCACAGGCTTCGACCGCCACACTTCTCCTGTGTTCAGCCCT GCCAACCCTGAAAGCTCCGTAGAAGACTGCTTGGCTCACCTTGGGGAGAAAGCATCACAG GAACTGAAAGTGCCTCTGCTTGGAGCCTTGCAGGTGCTCCTCAGCCGGTGAGTCCTCACT GGGGCCCGTCCCCACATGGATGCACTTCTCTCTGGGCTTCTCCACAGCTAGGGCTTTGTT TTAGGTGAACAGTGTCACTGCCTTTATTTACTTTTTGAGTTAACAAGACGTGGTCAAGAA CCTTTGGGTGCTTTGCTGCAGTTTGGTGTGACATACCTGGAGGACCACGCCGCCGAGTAC ATCATTCAACAAGGTGGCTGGGGCACTGTCTTTAACCTGGAGTCGGAGGATGAGGAGTGC CCTGCGGGCACC------------AACGACATCTACATCCTACCCAGCGACAGCTCTGCA CACGTCAGTCCCCCAGAATCGCCAACAGCAGCCGCTTCCTGGCAGGCAGAGAGCTTACCC GTCTCGCTGTCGGCCAGCCAGAGCTGGCACACAGAGAGCATGCCGGTGTCCCTGGGTCCC GAGTCTTGGCAGCAGGTCACGGTGGACCCTGAAGAAGTGAAAAGCTTGGACAGCAACGGG GCCGGAGAGAAGAGTGAGAACAACTCCTCAAACTCCGACATCGTACACGTGGAGAAGGAG GAGATACCTGAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 153-323, gnl|bosTau2|chr5 (66294900-66294727) | |
| 153-323, gnl|Hg17|chr22 (16512980-16513153) | |
| 153-323, gnl|Mm7|chr6 (120873755-120873918) | |
| 429-615, gnl|bosTau2|chr5 (66275094-66274911) | |
| 429-615, gnl|canFam2|chr27 (48320842-48320963) | |
| 429-615, gnl|danRer3|chr18 (24807109-24806988) | |
| 429-615, gnl|dasNov1|scaffold_151333 (5451-5330) | |
| 429-615, gnl|echTel1|scaffold_308614 (44631-44752) | |
| 429-615, gnl|galGal2|chr1 (58466463-58466580) | |
| 429-615, gnl|hg17|chr22 (16546300-16546421) | |
| 429-615, gnl|Hg17|chr22 (16546304-16546487) | |
| 429-615, gnl|mm7|chr6 (120890863-120890984) | |
| 429-615, gnl|Mm7|chr6 (120890867-120891031) | |
| 429-615, gnl|monDom2|scaffold_31 (27564183-27564304) | |
| 429-615, gnl|oryCun1|scaffold_198953 (35867-35988) | |
| 429-615, gnl|panTro1|chr23 (16418024-16418145) | |
| 429-615, gnl|rheMac2|chr10 (62388334-62388455) | |
| 429-615, gnl|rn3|chr4 (157509543-157509664) | |
| 429-615, gnl|tetNig1|chrUn_random (68392772-68392651) | |
| 798-1140, gnl|bosTau2|chr5 (67805720-67805366) | |
| 798-1140, gnl|canFam2|chr27 (48369101-48369747) | |
| 798-1140, gnl|danRer3|chr18 (24794062-24793413) | |
| 798-1140, gnl|dasNov1|scaffold_76170 (4978-5570) | |
| 798-1140, gnl|echTel1|scaffold_223853 (9680-9058) | |
| 798-1140, gnl|fr1|chrUn (175894581-175895260) | |
| 798-1140, gnl|galGal2|chr1 (58488093-58488724) | |
| 798-1140, gnl|hg17|chr22 (16583984-16584615) | |
| 798-1140, gnl|Hg17|chr22 (16583993-16584347) | |
| 798-1140, gnl|loxAfr1|scaffold_4358 (31961-32595) | |
| 798-1140, gnl|mm7|chr6 (120911966-120912516) | |
| 798-1140, gnl|Mm7|chr6 (120911975-120912329) | |
| 798-1140, gnl|monDom2|scaffold_31 (27607807-27608438) | |
| 798-1140, gnl|oryCun1|scaffold_200474 (4638-5266) | |
| 798-1140, gnl|panTro1|chr23 (16455603-16456234) | |
| 798-1140, gnl|rheMac2|chr10 (62424987-62425618) | |
| 798-1140, gnl|rn3|chr4 (157533749-157534290) | |
| 798-1140, gnl|xenTro1|scaffold_286 (67417-66872) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-323, gnl|bosTau2|chr5 (66294900-66294727) | |
| 153-323, gnl|Hg17|chr22 (16512980-16513153) | |
| 153-323, gnl|Mm7|chr6 (120873755-120873918) | |
| 429-615, gnl|bosTau2|chr5 (66275094-66274911) | |
| 429-615, gnl|canFam2|chr27 (48320842-48320963) | |
| 429-615, gnl|danRer3|chr18 (24807109-24806988) | |
| 429-615, gnl|dasNov1|scaffold_151333 (5451-5330) | |
| 429-615, gnl|echTel1|scaffold_308614 (44631-44752) | |
| 429-615, gnl|galGal2|chr1 (58466463-58466580) | |
| 429-615, gnl|hg17|chr22 (16546300-16546421) | |
| 429-615, gnl|Hg17|chr22 (16546304-16546487) | |
| 429-615, gnl|mm7|chr6 (120890863-120890984) | |
| 429-615, gnl|Mm7|chr6 (120890867-120891031) | |
| 429-615, gnl|monDom2|scaffold_31 (27564183-27564304) | |
| 429-615, gnl|oryCun1|scaffold_198953 (35867-35988) | |
| 429-615, gnl|panTro1|chr23 (16418024-16418145) | |
| 429-615, gnl|rheMac2|chr10 (62388334-62388455) | |
| 429-615, gnl|rn3|chr4 (157509543-157509664) | |
| 429-615, gnl|tetNig1|chrUn_random (68392772-68392651) | |
| 798-1140, gnl|bosTau2|chr5 (67805720-67805366) | |
| 798-1140, gnl|canFam2|chr27 (48369101-48369747) | |
| 798-1140, gnl|danRer3|chr18 (24794062-24793413) | |
| 798-1140, gnl|dasNov1|scaffold_76170 (4978-5570) | |
| 798-1140, gnl|echTel1|scaffold_223853 (9680-9058) | |
| 798-1140, gnl|fr1|chrUn (175894581-175895260) | |
| 798-1140, gnl|galGal2|chr1 (58488093-58488724) | |
| 798-1140, gnl|hg17|chr22 (16583984-16584615) | |
| 798-1140, gnl|Hg17|chr22 (16583993-16584347) | |
| 798-1140, gnl|loxAfr1|scaffold_4358 (31961-32595) | |
| 798-1140, gnl|mm7|chr6 (120911966-120912516) | |
| 798-1140, gnl|Mm7|chr6 (120911975-120912329) | |
| 798-1140, gnl|monDom2|scaffold_31 (27607807-27608438) | |
| 798-1140, gnl|oryCun1|scaffold_200474 (4638-5266) | |
| 798-1140, gnl|panTro1|chr23 (16455603-16456234) | |
| 798-1140, gnl|rheMac2|chr10 (62424987-62425618) | |
| 798-1140, gnl|rn3|chr4 (157533749-157534290) | |
| 798-1140, gnl|xenTro1|scaffold_286 (67417-66872) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| cty (0.10408) |