Non-Coding RNA Search

Ss1.1-Spl1-SPL010037D03.5

Sequence:


               
               AGCAGTTCCGGTTCGGATTCGAGCGGCTGCCGGCGCGGCTGAGAGGTGGGCCGGAGCGAT
GCCAGCGCGCAGCCGCTACCGCCCCCGCCTCCATTCCGGCTCCCCTCCCCGAGCCCCGCC
CCCGCCTCTCGAGGCGTTTTACTCCGGCGAGGCCCGGAGGGCGCCGGACTCCGACAACGG
CTGGTACGCCGACTCGGAGGTGGGTCCGGGGAACCTGACTCGGGCCGCGGAGGCAGTGGA
AGAGGAAATGGCTGGTCCTAATCAACTCTGCATTCGCCGCTGGACTACCAAGCATGTTGC
TGTTTGGCTGAAGGATGAAGGTTTTTTTGAATATGTGGACATTTTATGCAACAAACACCG
ACTTGACGGAATCACATTGCTAACATTGACTGAATATGATCTCCGGTCTCCTCCTCTGGA
AATCAAAGTCTTGGGGGACATTAAAAGGTTAATGCTCTCAGTTCGAAAACTGCAGAAAAT
ACATATTGATGTCTTAGAAGAGATGGGATACAATAGTGACAGCCCCATGAGTTCCATGAC
TCCTTTCATCAGTGTTCTTCAGAATGCAGAGTGGCTCTGTAATGGGGAGCCTTCACATGA
CTGTGATGGACCCATCACTGATTTGAATTCTGATCAATACCAGTATGTGAATGGCAAAAA
CAAACATTCTATTCGAAGATTGGACCCAGAGTATTGGAAAACCATATTGAGTTGTATATA
TGTTTTTATAGTATTTGGATTTACATCTTTCATAATGGTGATAGTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGTTCCGGTTCGGATTCGAGCGGCTGCCGGCGCGGCTGAGAGGTGGGCCGGAGCGAT
GCCAGCGCGCAGCCGCTACCGCCCCCGCCTCCATTCCGGCTCCCCTCCCCGAGCCCCGCC
CCCGCCTCTCGAGGCGTTTTACTCCGGCGAGGCCCGGAGGGCGCCGGACTCCGACAACGG
CTGGTACGCCGACTCGGAGGTGGGTCCGGGGAACCTGACTCGGGCCGCGGAGGCAGTGGA
AGAGGAAATGGCTGGTCCTAATCAACTCTGCATTCGCCGCTGGACTACCAAGCATGTTGC
TGTTTGGCTGAAGGATGAAGGTTTTTTTGAATATGTGGACATTTTATGCAACAAACACCG
ACTTGACGGAATCACATTGCTAACATTGACTGAATATGATCTCCGGTCTCCTCCTCTGGA
AATCAAAGTCTTGGGGGACATTAAAAGGTTAATGCTCTCAGTTCGAAAACTGCAGAAAAT
ACATATTGATGTCTTAGAAGAGATGGGATACAATAGTGACAGCCCCATGAGTTCCATGAC
TCCTTTCATCAGTGTTCTTCAGAATGCAGAGTGGCTCTGTAATGGGGAGCCTTCACATGA
CTGTGATGGACCCATCACTGATTTGAATTCTGATCAATACCAGTATGTGAATGGCAAAAA
CAAACATTCTATTCGAAGATTGGACCCAGAGTATTGGAAAACCATATTGAGTTGTATATA
TGTTTTTATAGTATTTGGATTTACATCTTTCATAATGGTGATAGTCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61812921|ref|XP_601358.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61812921|ref|XP_601358.1|

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-233, gnl|bosTau2|chr28 (24025265-24025022)
               

               
               1-233, gnl|canFam2|chr4 (28585439-28586012)
               

               
               1-233, gnl|dasNov1|scaffold_62465 (3720-3168)
               

               
               1-233, gnl|echTel1|scaffold_308997 (12729-13319)
               

               
               1-233, gnl|hg17|chr10 (76541045-76541648)
               

               
               1-233, gnl|Hg17|chr10 (76541255-76541487)
               

               
               1-233, gnl|loxAfr1|scaffold_2307 (76296-76853)
               

               
               1-233, gnl|mm7|chr14 (19409074-19409585)
               

               
               1-233, gnl|Mm7|chr14 (19409223-19409454)
               

               
               1-233, gnl|monDom2|scaffold_14 (3203160-3203744)
               

               
               1-233, gnl|oryCun1|scaffold_200003 (22990-22386)
               

               
               1-233, gnl|panTro1|chr8 (77798854-77799456)
               

               
               1-233, gnl|rheMac2|chr9 (61893013-61892410)
               

               
               1-233, gnl|rn3|chr15 (2612995-2612490)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-233, gnl|bosTau2|chr28 (24025265-24025022)
               

               
               1-233, gnl|canFam2|chr4 (28585439-28586012)
               

               
               1-233, gnl|dasNov1|scaffold_62465 (3720-3168)
               

               
               1-233, gnl|echTel1|scaffold_308997 (12729-13319)
               

               
               1-233, gnl|hg17|chr10 (76541045-76541648)
               

               
               1-233, gnl|Hg17|chr10 (76541255-76541487)
               

               
               1-233, gnl|loxAfr1|scaffold_2307 (76296-76853)
               

               
               1-233, gnl|mm7|chr14 (19409074-19409585)
               

               
               1-233, gnl|Mm7|chr14 (19409223-19409454)
               

               
               1-233, gnl|monDom2|scaffold_14 (3203160-3203744)
               

               
               1-233, gnl|oryCun1|scaffold_200003 (22990-22386)
               

               
               1-233, gnl|panTro1|chr8 (77798854-77799456)
               

               
               1-233, gnl|rheMac2|chr9 (61893013-61892410)
               

               
               1-233, gnl|rn3|chr15 (2612995-2612490)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-233, gnl\|bosTau2\|chr28 (24025265-24025022)
	1-233, gnl\|canFam2\|chr4 (28585439-28586012)
	1-233, gnl\|dasNov1\|scaffold_62465 (3720-3168)
	1-233, gnl\|echTel1\|scaffold_308997 (12729-13319)
	1-233, gnl\|hg17\|chr10 (76541045-76541648)
	1-233, gnl\|Hg17\|chr10 (76541255-76541487)
	1-233, gnl\|loxAfr1\|scaffold_2307 (76296-76853)
	1-233, gnl\|mm7\|chr14 (19409074-19409585)
	1-233, gnl\|Mm7\|chr14 (19409223-19409454)
	1-233, gnl\|monDom2\|scaffold_14 (3203160-3203744)
	1-233, gnl\|oryCun1\|scaffold_200003 (22990-22386)
	1-233, gnl\|panTro1\|chr8 (77798854-77799456)
	1-233, gnl\|rheMac2\|chr9 (61893013-61892410)
	1-233, gnl\|rn3\|chr15 (2612995-2612490)