Non-Coding RNA Search

Ss1.1-Spl1-SPL010037F11.5

Sequence:


               
               CGCAGATTGTTTTCCGCAGCGTCATCGACATTATTAACAAGTACGCATTCTTTGCTTCAG
AGTACCCGCTCATCCTGTGTTTGGAAAATCACTGTTCTATTAAACAACAGAAGGTCATGG
TCCAGCACATGAAGAAAATTTTAGGAGACAAGCTCTACACAACATCGCCCAACGTTGAGG
AATCTTATCTGCCATCCCCAGATGTCCTGAAAGGAAAGATACTCATTAAAGCAAAGAAGC
TTTCCTCCAGTTGCTCTGGCGTAGAGGGAGATGTTACCGACGAGGATGAAGGGGCCGAGA
TGTCCCAGAGGCTGGGCAAAGAGAATGCAGAGCAGCCCAACCTCGTCCCCATGAAGCGCT
TCCAGCTCTGCAAAGAGCTGTCTGAGCTGGTGAGCATCTGTAAGTCGGTGCAGTTCAAGG
AGTTCCAGGTGTCCTTTCAGGCTCAGAAGTACTGGGAAGTCTGCTCATTTAATGAAGTGC
TCGCCAGCAAATATGCCAACGAGAACCCGGGGGACTTTGTCAATTACAACAAGCGCTTTC
TGGCCAGAGTTTTCCCCAGCCCGATGAGAATTGACTCCAGCAACATGAACCCTCAAGATT
TTTGGAAATGTGGTTGTCAGATTGTGGCCATGAACTTTCAGACCCCGGGCCTGATGATGG
ATCTGAACATCGGCTGGTTCAAGCAGAACGGGAACTGTGGGTACGTGCTCCGGCCAGCCA
TCATGAGGGAGGAGGTCTCTTTCTTCAGCGCCAACACCAAAGACTCCGTCCCGGGAGTCT
CGCCCCAGCTCCTGCACATCAAGATCATCAGCGGGCAGAACTTCCCCAAACCCAAAGGAT
CAGGGGCCAAAGGCGATGTGGTGGATCCTTACGTCTACGTCGAAATCCACGGGATCCCAG
CCGACTGTGCCGAACAGAGGACGAAAACCGTGCACCAGAATGGAGACGCCCCCATCTTCG
ACGAAAGCTTTGAGTTTCAGATCAACCTGCCTGAACTGGCTATGGTGCGCTTTGTGGTCC
TGGACGACGACTACATCGGGGACGAATTTATTGGCCAGTACACGATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGATTGTTTTCCGCAGCGTCATCGACATTATTAACAAGTACGCATTCTTTGCTTCAG
AGTACCCGCTCATCCTGTGTTTGGAAAATCACTGTTCTATTAAACAACAGAAGGTCATGG
TCCAGCACATGAAGAAAATTTTAGGAGACAAGCTCTACACAACATCGCCCAACGTTGAGG
AATCTTATCTGCCATCCCCAGATGTCCTGAAAGGAAAGATACTCATTAAAGCAAAGAAGC
TTTCCTCCAGTTGCTCTGGCGTAGAGGGAGATGTTACCGACGAGGATGAAGGGGCCGAGA
TGTCCCAGAGGCTGGGCAAAGAGAATGCAGAGCAGCCCAACCTCGTCCCCATGAAGCGCT
TCCAGCTCTGCAAAGAGCTGTCTGAGCTGGTGAGCATCTGTAAGTCGGTGCAGTTCAAGG
AGTTCCAGGTGTCCTTTCAGGCTCAGAAGTACTGGGAAGTCTGCTCATTTAATGAAGTGC
TCGCCAGCAAATATGCCAACGAGAACCCGGGGGACTTTGTCAATTACAACAAGCGCTTTC
TGGCCAGAGTTTTCCCCAGCCCGATGAGAATTGACTCCAGCAACATGAACCCTCAAGATT
TTTGGAAATGTGGTTGTCAGATTGTGGCCATGAACTTTCAGACCCCGGGCCTGATGATGG
ATCTGAACATCGGCTGGTTCAAGCAGAACGGGAACTGTGGGTACGTGCTCCGGCCAGCCA
TCATGAGGGAGGAGGTCTCTTTCTTCAGCGCCAACACCAAAGACTCCGTCCCGGGAGTCT
CGCCCCAGCTCCTGCACATCAAGATCATCAGCGGGCAGAACTTCCCCAAACCCAAAGGAT
CAGGGGCCAAAGGCGATGTGGTGGATCCTTACGTCTACGTCGAAATCCACGGGATCCCAG
CCGACTGTGCCGAACAGAGGACGAAAACCGTGCACCAGAATGGAGACGCCCCCATCTTCG
ACGAAAGCTTTGAGTTTCAGATCAACCTGCCTGAACTGGCTATGGTGCGCTTTGTGGTCC
TGGACGACGACTACATCGGGGACGAATTTATTGGCCAGTACACGATTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|10435513|dbj|BAB14606.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|10435513|dbj|BAB14606.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-1066, gnl|bosTau2|chr1 (27192110-27193173)
               

               
               3-1066, gnl|Hg17|chr3 (17027319-17028382)
               

               
               3-1066, gnl|Mm7|chr17 (48755402-48756465)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1066, gnl|bosTau2|chr1 (27192110-27193173)
               

               
               3-1066, gnl|Hg17|chr3 (17027319-17028382)
               

               
               3-1066, gnl|Mm7|chr17 (48755402-48756465)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               eru (0.120048)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               nbm (0.0993246)

	3-1066, gnl\|bosTau2\|chr1 (27192110-27193173)
	3-1066, gnl\|Hg17\|chr3 (17027319-17028382)
	3-1066, gnl\|Mm7\|chr17 (48755402-48756465)