Non-Coding RNA Search

Ss1.1-Spl1-SPL010037H08.5

Sequence:


               
               CAGGAGGCACTTGGGATCGTCCGCAGGATTGGGACTGCTACAGAGGCCGCCACGGAGCCC
GCCGGAGCCACCGTTCCCACTGCTGCTGCCGCCGCTGCCCGAATCGGAACCGTCGGGCCG
CAGCCGCCGGCAATGCCGCGAAGGAAGAGGAATGCAGGCAGTAGTTCAGATGGAACCGAA
GATTCCGATTTTTCTACAGATCTCGAGCACACAGACAGTTCAGAGAGTGATGGCACTTCC
CGGCGATCTGCCCGAGTCACCCGCTCCTCAGCCCGGCTAAGCCAGAGTTCCCAAGATTCC
AGCCCTGTTCGAAATTTGCAGTCTTTTGGCACTGAGGAGCCTGCTTATTCTACCAGGAGA
GTGACCCGTAGTCAGCAGCAACCTACCCCAGTGACTCCGAAGAAATACCCGCTTCGGCAG
ACTCGGTCATCTGGCTCAGAAACTGAGCAAGTGGTTGAATTTTCAGATAGAGAAACGAAA
AATACAGCTGATCATGATGAATCTCCACCTCGAACGCCAACTGGAAACGCCCCTTCGTCC
GAGTCTGATATAGACATCTCCAGCCCCAATGTGTCCCATGATGAGAGCATTGCCAAGGAC
ATGTCCCTGAAGGATTCGGGCAGTGATCTCTCTCATCGCCCCAAGCGCCGACGCTTCCAC
GAGAGCTACAATTTCAACATGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAGGCACTTGGGATCGTCCGCAGGATTGGGACTGCTACAGAGGCCGCCACGGAGCCC
GCCGGAGCCACCGTTCCCACTGCTGCTGCCGCCGCTGCCCGAATCGGAACCGTCGGGCCG
CAGCCGCCGGCAATGCCGCGAAGGAAGAGGAATGCAGGCAGTAGTTCAGATGGAACCGAA
GATTCCGATTTTTCTACAGATCTCGAGCACACAGACAGTTCAGAGAGTGATGGCACTTCC
CGGCGATCTGCCCGAGTCACCCGCTCCTCAGCCCGGCTAAGCCAGAGTTCCCAAGATTCC
AGCCCTGTTCGAAATTTGCAGTCTTTTGGCACTGAGGAGCCTGCTTATTCTACCAGGAGA
GTGACCCGTAGTCAGCAGCAACCTACCCCAGTGACTCCGAAGAAATACCCGCTTCGGCAG
ACTCGGTCATCTGGCTCAGAAACTGAGCAAGTGGTTGAATTTTCAGATAGAGAAACGAAA
AATACAGCTGATCATGATGAATCTCCACCTCGAACGCCAACTGGAAACGCCCCTTCGTCC
GAGTCTGATATAGACATCTCCAGCCCCAATGTGTCCCATGATGAGAGCATTGCCAAGGAC
ATGTCCCTGAAGGATTCGGGCAGTGATCTCTCTCATCGCCCCAAGCGCCGACGCTTCCAC
GAGAGCTACAATTTCAACATGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q29355_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q29355_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               550-684, - strand, RNAz p=0.592164

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               550-684, - strand, RNAz p=0.592164

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               146-295, gnl|bosTau2|chr19 (29583766-29583617)
               

               
               146-295, gnl|Hg17|chr17 (45224245-45224394)
               

               
               146-295, gnl|Mm7|chr11 (95415237-95415088)
               


               
               471-684, gnl|bosTau2|chr19 (29578175-29577962)
               

               
               471-684, gnl|Hg17|chr17 (45230678-45230891)
               

               
               471-684, gnl|Mm7|chr11 (95409259-95409046)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-295, gnl|bosTau2|chr19 (29583766-29583617)
               

               
               146-295, gnl|Hg17|chr17 (45224245-45224394)
               

               
               146-295, gnl|Mm7|chr11 (95415237-95415088)
               


               
               471-684, gnl|bosTau2|chr19 (29578175-29577962)
               

               
               471-684, gnl|Hg17|chr17 (45230678-45230891)
               

               
               471-684, gnl|Mm7|chr11 (95409259-95409046)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	146-295, gnl\|bosTau2\|chr19 (29583766-29583617)
	146-295, gnl\|Hg17\|chr17 (45224245-45224394)
	146-295, gnl\|Mm7\|chr11 (95415237-95415088)

	471-684, gnl\|bosTau2\|chr19 (29578175-29577962)
	471-684, gnl\|Hg17\|chr17 (45230678-45230891)
	471-684, gnl\|Mm7\|chr11 (95409259-95409046)