Ss1.1-Spl1-SPL010038G03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTCCCGCCTCCTCGACCCCGTCGCGAGCTGTCGGAGCAGCCAGCCCCGGAGCCCTCCC CGAGCGCCGCGCCGCCGCAGCATGGAGCACTCACAGCCCAACAGCATGCCCCAGGATTTG TCAGAGGCCCTGAAGGAGGCCACCAAGGAGGTGCACGTCCAGGCTGAGAATGCCGAGTTC ATGAAGAACTTTCAGAAGGGCGAGGTCACCCGAGAAGGCTTTAAGCTGGTGATGGCGTCC TTGTACCACATCTACGATGCCCTGGAGGAGGAGATCGAGCACAACAAGGAGAACCCGGTC TACACGCCCCTCTACTTCCCGGAAGAGCTGCACCGCCGGGCCGCCCTGGAGCAGGACATG GCCTTCTGGTATGGGCCCCGCTGGCAGGAGGCCATCCCCTACACGCAGGCCACCAAGCGC TACGTGCGGCGACTGCAGCAGGTGGGGCGCTTCGAGCCCGAGCTGCTGGTGGCCCACGCC TACACCCGCTACATGGGTGACCTGTCTGGGGGCCAGGTCCTCAAGAAGATCGCTCAGAAG GCCCTGGACCTGCCCAGCTCCGGGGAGGGCCTGGCCTTCTTCACTTTCCCCAATGTCGCC AACGCCACCAAGTTCAAGCAGCTGTACCGCTCCCGAATGAACACTCTGGAGATGACCCCC GAGGTCAAGCAGAGGGTCCTCGAAGAAGCCAAGACCGCCTTCCTGCTCAACATTCAGCTG TTTGAGGAGGTGCAGGAGCTGCTGACCCAGGACACTAAGGACCAGAGACCCTCGCAGGCA TCCGACGTCCGCAAGAGGGCTGGCAGCCGGGTGCAAGACTCCACTCCCGTGACAACCCCC AGGGGGAAGCCACAGCTCAGCGTCCTCTCCCAGGTGCCGCTCGTCCGATGGGTCCTGACA CTCAGCTTTCTGGTGGCAACGGTCGCCATGGGGCTTTATGCCATGTGAATGCAACCCTGT GAATGCAACCGTGCTGGCTCCTGGGGGCCGTGAACTCTGCCTGGAGAGGGATGGTCTCTT GACTGGCTTCCTTGTTGGGCATGTGGGGGTCGGGGGAGGCTCTGAGGGCCCCTGCCCTCT CCCTGCGTCCCTCCCTCTCGCTGGAAAAAAGGAGTCTGTGGCATCTTTCCCAACCAAGAG CACATGCAGCCAGTGCCCTGAACTTCAGAGAGGGACAAGGGGTCCAGCATGGCCCCCTCG CACCCTCCCCGTCCCGTTCCTGCAGCAGAGCCCAGAGAATGGAGCCAGCCAGAAGCCGCA GCTGTTTCTGAGCCTCCAAACACCGCGGGTCCGCGGTCTCCCTTTTGACGTGCCTTGACT GCCTTCCTGTGGGCCGTGGCAATTTTTATAGAACTGTGCAAAGATGTTGTGTCTCGTGTT TCCGTCTTGTTTTTGTTGGAGCCACTCTTCGTTCCCGGCTCAGCCTGAACTGTGGTATTT TGTTGTGTTCTGTTTTTATAGCAAGGTGGGGTGAAGGGTGGGGAGGGAGCTGTTTTAACA GCACTGTGGCCTTGGTCACTAACTTTTATGTGAAGTAATAAAGTACATGGCCTGATAGTA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTCCCGCCTCCTCGACCCCGTCGCGAGCTGTCGGAGCAGCCAGCCCCGGAGCCCTCCC CGAGCGCCGCGCCGCCGCAGCATGGAGCACTCACAGCCCAACAGCATGCCCCAGGATTTG TCAGAGGCCCTGAAGGAGGCCACCAAGGAGGTGCACGTCCAGGCTGAGAATGCCGAGTTC ATGAAGAACTTTCAGAAGGGCGAGGTCACCCGAGAAGGCTTTAAGCTGGTGATGGCGTCC TTGTACCACATCTACGATGCCCTGGAGGAGGAGATCGAGCACAACAAGGAGAACCCGGTC TACACGCCCCTCTACTTCCCGGAAGAGCTGCACCGCCGGGCCGCCCTGGAGCAGGACATG GCCTTCTGGTATGGGCCCCGCTGGCAGGAGGCCATCCCCTACACGCAGGCCACCAAGCGC TACGTGCGGCGACTGCAGCAGGTGGGGCGCTTCGAGCCCGAGCTGCTGGTGGCCCACGCC TACACCCGCTACATGGGTGACCTGTCTGGGGGCCAGGTCCTCAAGAAGATCGCTCAGAAG GCCCTGGACCTGCCCAGCTCCGGGGAGGGCCTGGCCTTCTTCACTTTCCCCAATGTCGCC AACGCCACCAAGTTCAAGCAGCTGTACCGCTCCCGAATGAACACTCTGGAGATGACCCCC GAGGTCAAGCAGAGGGTCCTCGAAGAAGCCAAGACCGCCTTCCTGCTCAACATTCAGCTG TTTGAGGAGGTGCAGGAGCTGCTGACCCAGGACACTAAGGACCAGAGACCCTCGCAGGCA TCCGACGTCCGCAAGAGGGCTGGCAGCCGGGTGCAAGACTCCACTCCCGTGACAACCCCC AGGGGGAAGCCACAGCTCAGCGTCCTCTCCCAGGTGCCGCTCGTCCGATGGGTCCTGACA CTCAGCTTTCTGGTGGCAACGGTCGCCATGGGGCTTTATGCCATGTGAATGCAACCCTGT GAATGCAACCGTGCTGGCTCCTGGGGGCCGTGAACTCTGCCTGGAGAGGGATGGTCTCTT GACTGGCTTCCTTGTTGGGCATGTGGGGGTCGGGGGAGGCTCTGAGGGCCCCTGCCCTCT CCCTGCGTCCCTCCCTCTCGCTGGAAAAAAGGAGTCTGTGGCATCTTTCCCAACCAAGAG CACATGCAGCCAGTGCCCTGAACTTCAGAGAGGGACAAGGGGTCCAGCATGGCCCCCTCG CACCCTCCCCGTCCCGTTCCTGCAGCAGAGCCCAGAGAATGGAGCCAGCCAGAAGCCGCA GCTGTTTCTGAGCCTCCAAACACCGCGGGTCCGCGGTCTCCCTTTTGACGTGCCTTGACT GCCTTCCTGTGGGCCGTGGCAATTTTTATAGAACTGTGCAAAGATGTTGTGTCTCGTGTT TCCGTCTTGTTTTTGTTGGAGCCACTCTTCGTTCCCGGCTCAGCCTGAACTGTGGTATTT TGTTGTGTTCTGTTTTTATAGCAAGGTGGGGTGAAGGGTGGGGAGGGAGCTGTTTTAACA GCACTGTGGCCTTGGTCACTAACTTTTATGTGAAGTAATAAAGTACATGGCCTGATAGTA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 377-496, - strand, RNAz p=0.877927 | |
| 972-1115, - strand, RNAz p=0.716121 | |
| 1394-1488, + strand, RNAz p=0.85348 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 377-496, - strand, RNAz p=0.877927 | |
| 972-1115, - strand, RNAz p=0.716121 | |
| 1394-1488, + strand, RNAz p=0.85348 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_002133, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 220-720, gnl|bosTau2|chr5 (46444038-46444538) | |
| 220-720, gnl|canFam2|chr10 (31818881-31818364) | |
| 220-720, gnl|danRer3|chr22 (29480441-29479940) | |
| 220-720, gnl|dasNov1|scaffold_11386 (36607-37118) | |
| 220-720, gnl|echTel1|scaffold_242376 (14585-14074) | |
| 220-720, gnl|fr1|chrUn (262316108-262315530) | |
| 220-720, gnl|galGal2|chr1 (48821357-48820844) | |
| 220-720, gnl|hg17|chr22 (34107227-34107741) | |
| 220-720, gnl|Hg17|chr22 (34107226-34107726) | |
| 220-720, gnl|loxAfr1|scaffold_11661 (11029-10529) | |
| 220-720, gnl|mm7|chr8 (73638766-73639278) | |
| 220-720, gnl|Mm7|chr8 (73638764-73639265) | |
| 220-720, gnl|monDom2|scaffold_34 (2904734-2904220) | |
| 220-720, gnl|oryCun1|scaffold_173117 (1550-1037) | |
| 220-720, gnl|panTro1|chr23 (34264393-34264907) | |
| 220-720, gnl|rheMac2|chr10 (79299016-79299530) | |
| 220-720, gnl|rn3|chr19 (13970947-13971459) | |
| 220-720, gnl|tetNig1|chr18 (3767246-3767821) | |
| 220-720, gnl|xenTro1|scaffold_156 (433298-433804) | |
| 242-717, gnl|bosTau2|chr25 (4471598-4472073) | |
| 242-717, gnl|canFam2|chr6 (39925243-39924738) | |
| 242-717, gnl|danRer3|chr22 (29480443-29479944) | |
| 242-717, gnl|dasNov1|scaffold_11386 (36602-37107) | |
| 242-717, gnl|echTel1|scaffold_313279 (40230-39740) | |
| 242-717, gnl|fr1|chrUn (108227846-108228343) | |
| 242-717, gnl|galGal2|chr14 (14271590-14271086) | |
| 242-717, gnl|hg17|chr16 (4497709-4498213) | |
| 242-717, gnl|Hg17|chr16 (4497731-4498206) | |
| 242-717, gnl|loxAfr1|scaffold_11661 (11029-10525) | |
| 242-717, gnl|mm7|chr16 (4437446-4437950) | |
| 242-717, gnl|Mm7|chr16 (4437468-4437943) | |
| 242-717, gnl|monDom2|scaffold_17 (43230458-43229954) | |
| 242-717, gnl|oryCun1|scaffold_60424 (150-654) | |
| 242-717, gnl|panTro1|chr18 (4433734-4434238) | |
| 242-717, gnl|rheMac2|chr20 (4675255-4675759) | |
| 242-717, gnl|rn3|chr10 (10916367-10915863) | |
| 242-717, gnl|tetNig1|chr3 (9864773-9864276) | |
| 242-717, gnl|xenTro1|scaffold_592 (362734-363238) | |
| 816-1561, gnl|bosTau2|chr5 (46446829-46447562) | |
| 816-1561, gnl|Hg17|chr22 (34114013-34114755) | |
| 816-1561, gnl|Mm7|chr8 (73641805-73642511) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 220-720, gnl|bosTau2|chr5 (46444038-46444538) | |
| 220-720, gnl|canFam2|chr10 (31818881-31818364) | |
| 220-720, gnl|danRer3|chr22 (29480441-29479940) | |
| 220-720, gnl|dasNov1|scaffold_11386 (36607-37118) | |
| 220-720, gnl|echTel1|scaffold_242376 (14585-14074) | |
| 220-720, gnl|fr1|chrUn (262316108-262315530) | |
| 220-720, gnl|galGal2|chr1 (48821357-48820844) | |
| 220-720, gnl|hg17|chr22 (34107227-34107741) | |
| 220-720, gnl|Hg17|chr22 (34107226-34107726) | |
| 220-720, gnl|loxAfr1|scaffold_11661 (11029-10529) | |
| 220-720, gnl|mm7|chr8 (73638766-73639278) | |
| 220-720, gnl|Mm7|chr8 (73638764-73639265) | |
| 220-720, gnl|monDom2|scaffold_34 (2904734-2904220) | |
| 220-720, gnl|oryCun1|scaffold_173117 (1550-1037) | |
| 220-720, gnl|panTro1|chr23 (34264393-34264907) | |
| 220-720, gnl|rheMac2|chr10 (79299016-79299530) | |
| 220-720, gnl|rn3|chr19 (13970947-13971459) | |
| 220-720, gnl|tetNig1|chr18 (3767246-3767821) | |
| 220-720, gnl|xenTro1|scaffold_156 (433298-433804) | |
| 242-717, gnl|bosTau2|chr25 (4471598-4472073) | |
| 242-717, gnl|canFam2|chr6 (39925243-39924738) | |
| 242-717, gnl|danRer3|chr22 (29480443-29479944) | |
| 242-717, gnl|dasNov1|scaffold_11386 (36602-37107) | |
| 242-717, gnl|echTel1|scaffold_313279 (40230-39740) | |
| 242-717, gnl|fr1|chrUn (108227846-108228343) | |
| 242-717, gnl|galGal2|chr14 (14271590-14271086) | |
| 242-717, gnl|hg17|chr16 (4497709-4498213) | |
| 242-717, gnl|Hg17|chr16 (4497731-4498206) | |
| 242-717, gnl|loxAfr1|scaffold_11661 (11029-10525) | |
| 242-717, gnl|mm7|chr16 (4437446-4437950) | |
| 242-717, gnl|Mm7|chr16 (4437468-4437943) | |
| 242-717, gnl|monDom2|scaffold_17 (43230458-43229954) | |
| 242-717, gnl|oryCun1|scaffold_60424 (150-654) | |
| 242-717, gnl|panTro1|chr18 (4433734-4434238) | |
| 242-717, gnl|rheMac2|chr20 (4675255-4675759) | |
| 242-717, gnl|rn3|chr10 (10916367-10915863) | |
| 242-717, gnl|tetNig1|chr3 (9864773-9864276) | |
| 242-717, gnl|xenTro1|scaffold_592 (362734-363238) | |
| 816-1561, gnl|bosTau2|chr5 (46446829-46447562) | |
| 816-1561, gnl|Hg17|chr22 (34114013-34114755) | |
| 816-1561, gnl|Mm7|chr8 (73641805-73642511) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| cje (0.660939) | |
| csp (0.644745) | |
| cly (0.603209) | |
| nje (0.33184) | |
| cga (0.279096) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| lun (0.150489) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ova (0.129132) | |
| eru (0.120048) | |
| clu (0.119646) | |
| spc (0.113366) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.660939) | |
| csp (0.644745) | |
| cly (0.603209) | |
| nje (0.33184) | |
| cga (0.279096) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| lun (0.150489) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ova (0.129132) | |
| eru (0.120048) | |
| clu (0.119646) | |
| spc (0.113366) |