Ss1.1-Spl1-SPL010039C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTGCCCGAAGCCCGGAGACGGACCGACGGACAGATCGTTTGGCGGACGGGCTTGGGCG CTCTCCTTGTGCTCGGGGCCACCTTCAGCGAAGCTAGGGGTTTGCAGCGCGCGCTTCCCC GCCCGGTCGCAGCCACTCCGGCTCCGGCGGCCTCGGCGCGCGAGGGACTGGAGGTGCGGG AGCCGCTCTCCGCCGGTGGGTCCCTGCGCTGCTCAGCCCGGGCCGCCGCGCCGCGGCAGC GAGCGGCCTCTCTGAGCCCCCCGCTCCCCTCCGGCCCGCTCTGAGCAACGGTGCTCCGGG GCTCCAAACTCGGGCTGCCGGGGCAAGTGTCTTCATGAACCCAGAGGATGTCCGGGAAGC ATTACAAGGGTCCTGAAGTCAGTTGTTGCATCAAATATTTCATATTTGGCTTCAATGTCA TATTTTGGTTTTTGGGAATAGCATTTCTTGGAATCGGACTGTGGGCGTGGAATGAAAAAG GAGTCCTGTCCAACATCTCGTCCATCACTGACCTTGGCGGGTTTGACCCGGTTTGGCTCT TCCTTGTGGTGGGAGGAGTGATGTTCATTCTGGGATTCGCAGGGTGCATCGGAGCTCTGC GGGAGAACACCTTCCTTCTCAAGTTTTTTTCTGTGTTCCTGGGAATTATTTTCTTCCTGG AGCTCACTGCTGGGGTTCTGGCATTTGTTTTCAAAGACTGGATCAAAGACCAGCTGTATT TCTTTATAAACAACAACATCAGAGCATACAGGGATGACATTGATTTGCAAAACCTCATAG ACTTCACCCAGGAATATTGGCAGTGCTGTGGGGCTTTTGGAGCTGATGATTGGAACCTAA ATATTTACTTCAATTGCACAGATTCCAATGCAAGCCGAGAGCGATGCGGCGTGCCCTTCT CCTGCTGTACTAAAGACCCCGCAGAAGATGTCATCAACACTCAGTGTGGCTATGATGCCA GGCAAAAACCAGAAGTTGACCAGCAGATTGTCATCTACACGAAAGGCTGTGTGCCCCAGT TTGAGAAGTGGTTGCAGGACAACTTAACCATCGTGGCTGGTATTTTCATAGGCATTGCCC TGCTACAGATTTTTGGGATATGCCTGGCCCAGAATCTGGTGAGTGATATTGAAGCTGTCA GGGCTAGCTGGTAGAGCGCCTGCAACAGCTGCTTCAAGACACTGGACAGACCCAGCCTTC CTGACCCTCCAGTGTGCCCAACTGATACCCATGCTGCACAGAGCCTAATCACACAGGCAT CCTTCAATCCCACCTGATGGAGCTGCCAAGAACTGGGGCGGGGGGGAGGTTTGGGGGGGC GGGGGAAGCTGGGAAATGCTGCTCACTGACAGAATTAAACAGATCAACAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTGCCCGAAGCCCGGAGACGGACCGACGGACAGATCGTTTGGCGGACGGGCTTGGGCG CTCTCCTTGTGCTCGGGGCCACCTTCAGCGAAGCTAGGGGTTTGCAGCGCGCGCTTCCCC GCCCGGTCGCAGCCACTCCGGCTCCGGCGGCCTCGGCGCGCGAGGGACTGGAGGTGCGGG AGCCGCTCTCCGCCGGTGGGTCCCTGCGCTGCTCAGCCCGGGCCGCCGCGCCGCGGCAGC GAGCGGCCTCTCTGAGCCCCCCGCTCCCCTCCGGCCCGCTCTGAGCAACGGTGCTCCGGG GCTCCAAACTCGGGCTGCCGGGGCAAGTGTCTTCATGAACCCAGAGGATGTCCGGGAAGC ATTACAAGGGTCCTGAAGTCAGTTGTTGCATCAAATATTTCATATTTGGCTTCAATGTCA TATTTTGGTTTTTGGGAATAGCATTTCTTGGAATCGGACTGTGGGCGTGGAATGAAAAAG GAGTCCTGTCCAACATCTCGTCCATCACTGACCTTGGCGGGTTTGACCCGGTTTGGCTCT TCCTTGTGGTGGGAGGAGTGATGTTCATTCTGGGATTCGCAGGGTGCATCGGAGCTCTGC GGGAGAACACCTTCCTTCTCAAGTTTTTTTCTGTGTTCCTGGGAATTATTTTCTTCCTGG AGCTCACTGCTGGGGTTCTGGCATTTGTTTTCAAAGACTGGATCAAAGACCAGCTGTATT TCTTTATAAACAACAACATCAGAGCATACAGGGATGACATTGATTTGCAAAACCTCATAG ACTTCACCCAGGAATATTGGCAGTGCTGTGGGGCTTTTGGAGCTGATGATTGGAACCTAA ATATTTACTTCAATTGCACAGATTCCAATGCAAGCCGAGAGCGATGCGGCGTGCCCTTCT CCTGCTGTACTAAAGACCCCGCAGAAGATGTCATCAACACTCAGTGTGGCTATGATGCCA GGCAAAAACCAGAAGTTGACCAGCAGATTGTCATCTACACGAAAGGCTGTGTGCCCCAGT TTGAGAAGTGGTTGCAGGACAACTTAACCATCGTGGCTGGTATTTTCATAGGCATTGCCC TGCTACAGATTTTTGGGATATGCCTGGCCCAGAATCTGGTGAGTGATATTGAAGCTGTCA GGGCTAGCTGGTAGAGCGCCTGCAACAGCTGCTTCAAGACACTGGACAGACCCAGCCTTC CTGACCCTCCAGTGTGCCCAACTGATACCCATGCTGCACAGAGCCTAATCACACAGGCAT CCTTCAATCCCACCTGATGGAGCTGCCAAGAACTGGGGCGGGGGGGAGGTTTGGGGGGGC GGGGGAAGCTGGGAAATGCTGCTCACTGACAGAATTAAACAGATCAACAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 627-745, + strand, RNAz p=0.613184 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 627-745, + strand, RNAz p=0.613184 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 475-626, gnl|bosTau2|chr6 (10376502-10376351) | |
| 475-626, gnl|canFam2|chr32 (23642020-23642204) | |
| 475-626, gnl|danRer3|chr1 (8611855-8611675) | |
| 475-626, gnl|dasNov1|scaffold_3205 (13415-13600) | |
| 475-626, gnl|echTel1|scaffold_232662 (10712-10528) | |
| 475-626, gnl|fr1|chrUn (231458638-231458462) | |
| 475-626, gnl|galGal2|chr4 (60307605-60307790) | |
| 475-626, gnl|hg17|chr4 (99765059-99765244) | |
| 475-626, gnl|Hg17|chr4 (99765222-99765067) | |
| 475-626, gnl|loxAfr1|scaffold_6636 (4244-4059) | |
| 475-626, gnl|mm7|chr3 (138699436-138699244) | |
| 475-626, gnl|Mm7|chr3 (138699272-138699426) | |
| 475-626, gnl|monDom2|scaffold_37 (14519458-14519270) | |
| 475-626, gnl|oryCun1|scaffold_213701 (265773-265588) | |
| 475-626, gnl|panTro1|chr3 (116101668-116101853) | |
| 475-626, gnl|rheMac2|chr5 (91409596-91409781) | |
| 475-626, gnl|rn3|chr2 (236460160-236459977) | |
| 475-626, gnl|tetNig1|chr18 (2506833-2507013) | |
| 475-626, gnl|xenTro1|scaffold_785 (519276-519464) | |
| 627-797, gnl|bosTau2|chr6 (10371466-10371296) | |
| 627-797, gnl|canFam2|chr32 (23637644-23637852) | |
| 627-797, gnl|danRer3|chr1 (8617112-8616910) | |
| 627-797, gnl|dasNov1|scaffold_3205 (9151-9366) | |
| 627-797, gnl|echTel1|scaffold_308203 (7356-7137) | |
| 627-797, gnl|fr1|chrUn (231458895-231458696) | |
| 627-797, gnl|galGal2|chr4 (60305740-60305949) | |
| 627-797, gnl|hg17|chr4 (99760324-99760536) | |
| 627-797, gnl|Hg17|chr4 (99760504-99760334) | |
| 627-797, gnl|loxAfr1|scaffold_6636 (9150-8938) | |
| 627-797, gnl|mm7|chr3 (138703075-138702861) | |
| 627-797, gnl|Mm7|chr3 (138702893-138703063) | |
| 627-797, gnl|monDom2|scaffold_37 (14525711-14525503) | |
| 627-797, gnl|oryCun1|scaffold_213701 (271510-271298) | |
| 627-797, gnl|panTro1|chr3 (116096922-116097134) | |
| 627-797, gnl|rheMac2|chr5 (91404981-91405189) | |
| 627-797, gnl|rn3|chr2 (236463630-236463416) | |
| 627-797, gnl|tetNig1|chr18 (2506573-2506771) | |
| 627-797, gnl|xenTro1|scaffold_785 (515879-516103) | |
| 1086-1359, gnl|bosTau2|chr6 (10363658-10363396) | |
| 1086-1359, gnl|Hg17|chr4 (99750919-99750666) | |
| 1086-1359, gnl|Mm7|chr3 (138710917-138711189) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 475-626, gnl|bosTau2|chr6 (10376502-10376351) | |
| 475-626, gnl|canFam2|chr32 (23642020-23642204) | |
| 475-626, gnl|danRer3|chr1 (8611855-8611675) | |
| 475-626, gnl|dasNov1|scaffold_3205 (13415-13600) | |
| 475-626, gnl|echTel1|scaffold_232662 (10712-10528) | |
| 475-626, gnl|fr1|chrUn (231458638-231458462) | |
| 475-626, gnl|galGal2|chr4 (60307605-60307790) | |
| 475-626, gnl|hg17|chr4 (99765059-99765244) | |
| 475-626, gnl|Hg17|chr4 (99765222-99765067) | |
| 475-626, gnl|loxAfr1|scaffold_6636 (4244-4059) | |
| 475-626, gnl|mm7|chr3 (138699436-138699244) | |
| 475-626, gnl|Mm7|chr3 (138699272-138699426) | |
| 475-626, gnl|monDom2|scaffold_37 (14519458-14519270) | |
| 475-626, gnl|oryCun1|scaffold_213701 (265773-265588) | |
| 475-626, gnl|panTro1|chr3 (116101668-116101853) | |
| 475-626, gnl|rheMac2|chr5 (91409596-91409781) | |
| 475-626, gnl|rn3|chr2 (236460160-236459977) | |
| 475-626, gnl|tetNig1|chr18 (2506833-2507013) | |
| 475-626, gnl|xenTro1|scaffold_785 (519276-519464) | |
| 627-797, gnl|bosTau2|chr6 (10371466-10371296) | |
| 627-797, gnl|canFam2|chr32 (23637644-23637852) | |
| 627-797, gnl|danRer3|chr1 (8617112-8616910) | |
| 627-797, gnl|dasNov1|scaffold_3205 (9151-9366) | |
| 627-797, gnl|echTel1|scaffold_308203 (7356-7137) | |
| 627-797, gnl|fr1|chrUn (231458895-231458696) | |
| 627-797, gnl|galGal2|chr4 (60305740-60305949) | |
| 627-797, gnl|hg17|chr4 (99760324-99760536) | |
| 627-797, gnl|Hg17|chr4 (99760504-99760334) | |
| 627-797, gnl|loxAfr1|scaffold_6636 (9150-8938) | |
| 627-797, gnl|mm7|chr3 (138703075-138702861) | |
| 627-797, gnl|Mm7|chr3 (138702893-138703063) | |
| 627-797, gnl|monDom2|scaffold_37 (14525711-14525503) | |
| 627-797, gnl|oryCun1|scaffold_213701 (271510-271298) | |
| 627-797, gnl|panTro1|chr3 (116096922-116097134) | |
| 627-797, gnl|rheMac2|chr5 (91404981-91405189) | |
| 627-797, gnl|rn3|chr2 (236463630-236463416) | |
| 627-797, gnl|tetNig1|chr18 (2506573-2506771) | |
| 627-797, gnl|xenTro1|scaffold_785 (515879-516103) | |
| 1086-1359, gnl|bosTau2|chr6 (10363658-10363396) | |
| 1086-1359, gnl|Hg17|chr4 (99750919-99750666) | |
| 1086-1359, gnl|Mm7|chr3 (138710917-138711189) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| hyp (0.285673) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| pty (0.142714) | |
| cst (0.140036) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| hyp (0.285673) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| pty (0.142714) | |
| cst (0.140036) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |