Non-Coding RNA Search

Ss1.1-Spl1-SPL010039E07.5

Sequence:


               
               ATTTTTCCCGGTGTGCCTCGCGGTGGCGCGGGGTGGAACGGGTGTTGTAGTCCGACCGCT
CCGCTGGTCCAGCTGCATCGACTGGCAGGATGTCGGAGGTTCGGCTGCCACCGCTACGCG
CCCTGGACGACTTCGTTCTGGGGTCGGCACGTCTGGCGGCCCCGGATCCTTGCGACCCGC
AGCGATGGTGCCACCGCGTCATCAACAACCTCCTCTACTACCAAACCAACTACCTTGTCT
GCTTCGGCCTCGGTCTCGCTCTGGCTGGGTACGTGCGGCCTCTGCACACCCTCTTGAGCG
CGCTCGTGGTGGCCGTGGCCCTCGGCATGCTGGTGTGGGCGGCTGAGACTCGCGCAGCCG
TGCGCCGCTGCCGTCGCAGCCACCCAGCCGCCTGCCTGATCGCAGTGCTTGCCGTCAGCC
TCCTGGTTCTCTGGGCCGCGGGCGGCGCTTGCACCTTCCTGCTCAGCATCGCCGGGCCCG
TGCTTCTGATCCTGGTGCACGCGTCACTGCGTCTACGCAACCTCAAGAACAAGATTGAGA
ACAAGATTGAGAGCATTGGTCTCAAGCGGACGCCAATGGGGCTGCTACTGGAGGCGCTGG
GACAAGAACAGGAGGCTGGATCCTAGGGGCCTGGGATCTGCACCCAAAATGTGGATAATG
CCACCGCACCCCGGCCTGTACCCAAGACCCAGAGCCCTTTCCCAGCCCATAAGATAGGAG
TCCCTCTCCAGCTAAAAAACCAGGACAACTGCAACCCTTCCGCCTGCATCCCAAACTGGG
ATATTCCCTCGTACCCAACCCCCCCCATTTTAGGAAACCAGAGTCTTCCTAGCCTCGAAC
TTGGGACCCAGAGACACCCATACCTAGCCCCAAACTGGGGCTTGGAGACCAGGGCATCCG
TGGCCAACCTCAAACCCTGGGCCCAGAGACACTGCCCTAACCCCAGTCTGAGACCTCACC
TGTCTCCCATGCCCAGCCCCAAAGCTGGGGACTGGGACCAAGGCCTTCTCAAATCTTGAA
CCCAGGATCCAACTGTTCCCAGCCTCCATCTGGGTGGAGGATTCAGGTATCCTGACCCCA
TGAACCCTTGATCCCAGGTGACCCCAACATTCACCAGTCCCACTTGCCTCCCTCCAGCTC
TGCTTAGGGATCCTGCCATTCACCACTGCCCCCCCTCCAACTCCCCTTGGTGAGGACCAA
GGGGTGGGGTGGGAGTAGCCCTGACCAGGAATGGGGCATCTATATCAGTGTTGCTGCAAC
AATAAAGGCTGTTGCATTGCTCAAGCCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTCCCGGTGTGCCTCGCGGTGGCGCGGGGTGGAACGGGTGTTGTAGTCCGACCGCT
CCGCTGGTCCAGCTGCATCGACTGGCAGGATGTCGGAGGTTCGGCTGCCACCGCTACGCG
CCCTGGACGACTTCGTTCTGGGGTCGGCACGTCTGGCGGCCCCGGATCCTTGCGACCCGC
AGCGATGGTGCCACCGCGTCATCAACAACCTCCTCTACTACCAAACCAACTACCTTGTCT
GCTTCGGCCTCGGTCTCGCTCTGGCTGGGTACGTGCGGCCTCTGCACACCCTCTTGAGCG
CGCTCGTGGTGGCCGTGGCCCTCGGCATGCTGGTGTGGGCGGCTGAGACTCGCGCAGCCG
TGCGCCGCTGCCGTCGCAGCCACCCAGCCGCCTGCCTGATCGCAGTGCTTGCCGTCAGCC
TCCTGGTTCTCTGGGCCGCGGGCGGCGCTTGCACCTTCCTGCTCAGCATCGCCGGGCCCG
TGCTTCTGATCCTGGTGCACGCGTCACTGCGTCTACGCAACCTCAAGAACAAGATTGAGA
ACAAGATTGAGAGCATTGGTCTCAAGCGGACGCCAATGGGGCTGCTACTGGAGGCGCTGG
GACAAGAACAGGAGGCTGGATCCTAGGGGCCTGGGATCTGCACCCAAAATGTGGATAATG
CCACCGCACCCCGGCCTGTACCCAAGACCCAGAGCCCTTTCCCAGCCCATAAGATAGGAG
TCCCTCTCCAGCTAAAAAACCAGGACAACTGCAACCCTTCCGCCTGCATCCCAAACTGGG
ATATTCCCTCGTACCCAACCCCCCCCATTTTAGGAAACCAGAGTCTTCCTAGCCTCGAAC
TTGGGACCCAGAGACACCCATACCTAGCCCCAAACTGGGGCTTGGAGACCAGGGCATCCG
TGGCCAACCTCAAACCCTGGGCCCAGAGACACTGCCCTAACCCCAGTCTGAGACCTCACC
TGTCTCCCATGCCCAGCCCCAAAGCTGGGGACTGGGACCAAGGCCTTCTCAAATCTTGAA
CCCAGGATCCAACTGTTCCCAGCCTCCATCTGGGTGGAGGATTCAGGTATCCTGACCCCA
TGAACCCTTGATCCCAGGTGACCCCAACATTCACCAGTCCCACTTGCCTCCCTCCAGCTC
TGCTTAGGGATCCTGCCATTCACCACTGCCCCCCCTCCAACTCCCCTTGGTGAGGACCAA
GGGGTGGGGTGGGAGTAGCCCTGACCAGGAATGGGGCATCTATATCAGTGTTGCTGCAAC
AATAAAGGCTGTTGCATTGCTCAAGCCAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               PRAF2_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               PRAF2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               756-1032, - strand, RNAz p=0.998844

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               756-1032, - strand, RNAz p=0.998844

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               4-270, gnl|bosTau2|chrX (25911009-25910743)
               

               
               4-270, gnl|Hg17|chrX (48687984-48687715)
               

               
               4-270, gnl|Mm7|chrX (6161649-6161914)
               


               
               487-1032, gnl|bosTau2|chrX (25909117-25908593)
               

               
               487-1032, gnl|Hg17|chrX (48685916-48685382)
               

               
               487-1032, gnl|Mm7|chrX (6163418-6163940)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-270, gnl|bosTau2|chrX (25911009-25910743)
               

               
               4-270, gnl|Hg17|chrX (48687984-48687715)
               

               
               4-270, gnl|Mm7|chrX (6161649-6161914)
               


               
               487-1032, gnl|bosTau2|chrX (25909117-25908593)
               

               
               487-1032, gnl|Hg17|chrX (48685916-48685382)
               

               
               487-1032, gnl|Mm7|chrX (6163418-6163940)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               pla (0.267344)
               

               
               ecc (0.23007)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               ecc (0.23007)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	4-270, gnl\|bosTau2\|chrX (25911009-25910743)
	4-270, gnl\|Hg17\|chrX (48687984-48687715)
	4-270, gnl\|Mm7\|chrX (6161649-6161914)

	487-1032, gnl\|bosTau2\|chrX (25909117-25908593)
	487-1032, gnl\|Hg17\|chrX (48685916-48685382)
	487-1032, gnl\|Mm7\|chrX (6163418-6163940)

	pla (0.267344)
	ecc (0.23007)
	ton (0.1755)
	duo (0.172801)
	hyp (0.142837)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)