Non-Coding RNA Search

Ss1.1-Spl1-SPL010039E11.5

Sequence:


               
               GAGGCCGCCCCGGTCGCGCCGCGGCGGGAGCGGCCGGCGGAGGCTGTACGGCGAGGGGGA
GGGCCGGGGGAGGGGACGTCACCCCCGCCCGCCTCCTGCTGCCCCCCGCCTGCAGGCTCC
CAGCTTCAATCGGCGCCCAGCATCCCGCTGCCCCAGACCTTCCCGCGGGCGCGCACCGGG
CTCAACTCAGGCTCAGGACTGCAGGTGGACGTCTCCACTGTCCAGGAATCATTGAGTGTG
TGGACCAGACAGCCTCCCTGGAAGGCCGGCTACCCCGGAGTCCCGCCTCGGCATGGGCCT
CGCCATCGGGGCAGCTCCTGGGTCTGTGCTTGTCTGAGGGTGCTGCCCGTCATGGGGGCA
GCCATCTCCCAGGGGGCCCTCATCGCCATCATCTGCAACGGCCTCGTAGGCTTCTTGCTG
CTGCTGCTCTGGGTCATTCTCTGCTGGGCCTGCCACTCCCGCTCTGCCAACATCGACTCC
CTCTCGGAATCCAGTCCCAACTCCAGCCCTGGCCCCTGTCCTGAGAAGGCACCCCCGCCC
CAGAAGCCCAGCCATGAAGGCAGCTACCTGCTGCAGCCCTGAAGGCCCTGCCCCCCCGGC
CTAGCCTGGAGTCTGGGACATAAGTCCACCCCAGCCTGGAACCTGGAATCAGGATCCCAG
GATCCAGCCAGCCTGGGGTCCAGGACTCAGAATCCAGCCTGTCTGGAGCTGGACCTAGCA
GCCCAGAGTCTAGTTGGCCTGGCTCCAGGAGAGACTCTGCTGGCCCCAGGGAGACAGGCC
CAGGGTGGGAGTTCTGGAGTTGGTGCTAGGGCCAAGGCCATCCGGACTCGGCTCCAGCTG
GAGGGCCGGGGGCTGGGTTCCACCCTCCCCCAAGGCCAGGCACCTCTTGGCCCTCGAGGC
TGGGGAAGCAAACTGGAATCCACGGCAATAATGAGAGGGTGTCCAGGCTGGGCCCCTCCT
CTGGTCCTCCTACTGTTTGCTGGGTAATAAATGGAACTATGGCTCTAAAAAAAAAAAAAA
TCCTCTTCCTGGGAGCCTGGCTATAGCAAAATAAAAGGTGTATGTGGGCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCCGCCCCGGTCGCGCCGCGGCGGGAGCGGCCGGCGGAGGCTGTACGGCGAGGGGGA
GGGCCGGGGGAGGGGACGTCACCCCCGCCCGCCTCCTGCTGCCCCCCGCCTGCAGGCTCC
CAGCTTCAATCGGCGCCCAGCATCCCGCTGCCCCAGACCTTCCCGCGGGCGCGCACCGGG
CTCAACTCAGGCTCAGGACTGCAGGTGGACGTCTCCACTGTCCAGGAATCATTGAGTGTG
TGGACCAGACAGCCTCCCTGGAAGGCCGGCTACCCCGGAGTCCCGCCTCGGCATGGGCCT
CGCCATCGGGGCAGCTCCTGGGTCTGTGCTTGTCTGAGGGTGCTGCCCGTCATGGGGGCA
GCCATCTCCCAGGGGGCCCTCATCGCCATCATCTGCAACGGCCTCGTAGGCTTCTTGCTG
CTGCTGCTCTGGGTCATTCTCTGCTGGGCCTGCCACTCCCGCTCTGCCAACATCGACTCC
CTCTCGGAATCCAGTCCCAACTCCAGCCCTGGCCCCTGTCCTGAGAAGGCACCCCCGCCC
CAGAAGCCCAGCCATGAAGGCAGCTACCTGCTGCAGCCCTGAAGGCCCTGCCCCCCCGGC
CTAGCCTGGAGTCTGGGACATAAGTCCACCCCAGCCTGGAACCTGGAATCAGGATCCCAG
GATCCAGCCAGCCTGGGGTCCAGGACTCAGAATCCAGCCTGTCTGGAGCTGGACCTAGCA
GCCCAGAGTCTAGTTGGCCTGGCTCCAGGAGAGACTCTGCTGGCCCCAGGGAGACAGGCC
CAGGGTGGGAGTTCTGGAGTTGGTGCTAGGGCCAAGGCCATCCGGACTCGGCTCCAGCTG
GAGGGCCGGGGGCTGGGTTCCACCCTCCCCCAAGGCCAGGCACCTCTTGGCCCTCGAGGC
TGGGGAAGCAAACTGGAATCCACGGCAATAATGAGAGGGTGTCCAGGCTGGGCCCCTCCT
CTGGTCCTCCTACTGTTTGCTGGGTAATAAATGGAACTATGGCTCTAAAAAAAAAAAAAA
TCCTCTTCCTGGGAGCCTGGCTATAGCAAAATAAAAGGTGTATGTGGGCAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8K1D8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K1D8_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               521-913, - strand, RNAz p=0.998503
               

               
               570-967, + strand, RNAz p=0.989915

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               521-913, - strand, RNAz p=0.998503
               

               
               570-967, + strand, RNAz p=0.989915

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-191, gnl|bosTau2|chr8 (41307079-41306887)
               

               
               1-191, gnl|Hg17|chr9 (34512973-34512774)
               

               
               1-191, gnl|Mm7|chr4 (41778568-41778376)
               


               
               259-1067, gnl|bosTau2|chr8 (41305919-41305124)
               

               
               259-1067, gnl|canFam2|chr11 (54236614-54235804)
               

               
               259-1067, gnl|echTel1|scaffold_310419 (93085-93789)
               

               
               259-1067, gnl|hg17|chr15 (41217144-41217964)
               

               
               259-1067, gnl|Hg17|chr9 (34511804-34510980)
               

               
               259-1067, gnl|mm7|chr4 (41777479-41776640)
               

               
               259-1067, gnl|Mm7|chr4 (41777398-41776612)
               

               
               259-1067, gnl|oryCun1|scaffold_208840 (109103-108340)
               

               
               259-1067, gnl|panTro1|chr16 (41202976-41203796)
               

               
               259-1067, gnl|rheMac2|chr7 (21585876-21586684)
               

               
               259-1067, gnl|rn3|chr5 (59061180-59060328)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-191, gnl|bosTau2|chr8 (41307079-41306887)
               

               
               1-191, gnl|Hg17|chr9 (34512973-34512774)
               

               
               1-191, gnl|Mm7|chr4 (41778568-41778376)
               


               
               259-1067, gnl|bosTau2|chr8 (41305919-41305124)
               

               
               259-1067, gnl|canFam2|chr11 (54236614-54235804)
               

               
               259-1067, gnl|echTel1|scaffold_310419 (93085-93789)
               

               
               259-1067, gnl|hg17|chr15 (41217144-41217964)
               

               
               259-1067, gnl|Hg17|chr9 (34511804-34510980)
               

               
               259-1067, gnl|mm7|chr4 (41777479-41776640)
               

               
               259-1067, gnl|Mm7|chr4 (41777398-41776612)
               

               
               259-1067, gnl|oryCun1|scaffold_208840 (109103-108340)
               

               
               259-1067, gnl|panTro1|chr16 (41202976-41203796)
               

               
               259-1067, gnl|rheMac2|chr7 (21585876-21586684)
               

               
               259-1067, gnl|rn3|chr5 (59061180-59060328)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               ese (0.759013)
               

               
               fce (0.543183)
               

               
               nms (0.427716)
               

               
               ebs (0.354904)
               

               
               hyp (0.285673)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.759013)
               

               
               fce (0.543183)
               

               
               nms (0.427716)
               

               
               ebs (0.354904)
               

               
               hyp (0.285673)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	521-913, - strand, RNAz p=0.998503
	570-967, + strand, RNAz p=0.989915

	1-191, gnl\|bosTau2\|chr8 (41307079-41306887)
	1-191, gnl\|Hg17\|chr9 (34512973-34512774)
	1-191, gnl\|Mm7\|chr4 (41778568-41778376)

	259-1067, gnl\|bosTau2\|chr8 (41305919-41305124)
	259-1067, gnl\|canFam2\|chr11 (54236614-54235804)
	259-1067, gnl\|echTel1\|scaffold_310419 (93085-93789)
	259-1067, gnl\|hg17\|chr15 (41217144-41217964)
	259-1067, gnl\|Hg17\|chr9 (34511804-34510980)
	259-1067, gnl\|mm7\|chr4 (41777479-41776640)
	259-1067, gnl\|Mm7\|chr4 (41777398-41776612)
	259-1067, gnl\|oryCun1\|scaffold_208840 (109103-108340)
	259-1067, gnl\|panTro1\|chr16 (41202976-41203796)
	259-1067, gnl\|rheMac2\|chr7 (21585876-21586684)
	259-1067, gnl\|rn3\|chr5 (59061180-59060328)

	ese (0.759013)
	fce (0.543183)
	nms (0.427716)
	ebs (0.354904)
	hyp (0.285673)
	ton (0.1755)
	nco (0.161734)
	lnt (0.142308)
	pla (0.133672)
	ecc (0.115035)
	eje (0.0988338)