Non-Coding RNA Search

Ss1.1-Spl1-SPL010041B10.5

Sequence:


               
               CCACATCCCGGGAGGCTGTAGCTCTGCGGGTCCGTGCTGGGCGCGATGGCGGACTGGGCT
CGGGCTCAGAGCCCCGGCGCTGTGGAGGAGATTCTAGACCGGGAGAACAAGCGGATGGCG
GACACCTTGGCCTCCAAGGTCACCAGGCTCAAGTCGCTGGCCTTGGACATTGATAGGGAT
GTGGAGGACCAGAACCGGTACCTGGACGGCATGGACTCGGATTTCACGAGTGTGACGGGC
CTCCTCACGGGGAGTGTGAAGCGCTTTTCCACAATGGCGAGATCTGGGCGAGACAACCGG
AAGCTTCTCTGTGGTGTGGCCATGGGCCTGATCGTGGTCTTCTTCATCCTCTCCTACCTC
CTGTCAAGGGCAAGGACGTGAGCCAGTGGGAACTGGTTTCTGTAGGTACCTGGGACAACC
AGGGTCTTCCTCTGCCTTGTGTCCTGGGCTCCAGAAGATCTACCTACAAAATACCCCTTC
GAAGTGATGAGCATGGCTTAGGAATCTTTTTCCTGTGTGGCTGGGAGCCTCTGACCCAGT
AAGCTCATGTTAGCTGGTCCCATGTGTGCAAGGGGCCCATCCCCATTGGGTAACCAAGGC
CCAGCTTCCTCTGCCATCTTGGGTGCTAGAAGCCCTAGCAGAGCCAGGTTGGAGCAGAGC
AGCTGGGAATCCTGGACGTGACCACCTGTGACCAGCAGCCCTTCCCCCAGCCCTCAGGGT
TCTGATGTATTGAGGCTTCTCTGCTTGGTCTTGGTCTGGATAAGGCCACGTCTGGTATTC
GAGGTGCCCAGAGCCGACACAGGAAGGGGTGCGACTGTGAACCTCGAATCATTGCTGTCA
CTTTCAGCCAAGGGTCCTCAAACCAGAGATGGCCGTTGCTCCTGGCCAGGGCTGCCGGGC
ACTGGTGGACCAGCAAGAGTCAAGGGTCCTGCCGAGAGGTGTCTGCCTGCCGTCCAACCC
CATGGCTGGAGCCCGACCCTCAGGGAAGGGCAGTGGCCATGCGTGGAGAAGTGAACTGCA
GCATTGGCTGAAGACGCGGGCCCAGGTCCTCCTGGTCTCCCTGTGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACATCCCGGGAGGCTGTAGCTCTGCGGGTCCGTGCTGGGCGCGATGGCGGACTGGGCT
CGGGCTCAGAGCCCCGGCGCTGTGGAGGAGATTCTAGACCGGGAGAACAAGCGGATGGCG
GACACCTTGGCCTCCAAGGTCACCAGGCTCAAGTCGCTGGCCTTGGACATTGATAGGGAT
GTGGAGGACCAGAACCGGTACCTGGACGGCATGGACTCGGATTTCACGAGTGTGACGGGC
CTCCTCACGGGGAGTGTGAAGCGCTTTTCCACAATGGCGAGATCTGGGCGAGACAACCGG
AAGCTTCTCTGTGGTGTGGCCATGGGCCTGATCGTGGTCTTCTTCATCCTCTCCTACCTC
CTGTCAAGGGCAAGGACGTGAGCCAGTGGGAACTGGTTTCTGTAGGTACCTGGGACAACC
AGGGTCTTCCTCTGCCTTGTGTCCTGGGCTCCAGAAGATCTACCTACAAAATACCCCTTC
GAAGTGATGAGCATGGCTTAGGAATCTTTTTCCTGTGTGGCTGGGAGCCTCTGACCCAGT
AAGCTCATGTTAGCTGGTCCCATGTGTGCAAGGGGCCCATCCCCATTGGGTAACCAAGGC
CCAGCTTCCTCTGCCATCTTGGGTGCTAGAAGCCCTAGCAGAGCCAGGTTGGAGCAGAGC
AGCTGGGAATCCTGGACGTGACCACCTGTGACCAGCAGCCCTTCCCCCAGCCCTCAGGGT
TCTGATGTATTGAGGCTTCTCTGCTTGGTCTTGGTCTGGATAAGGCCACGTCTGGTATTC
GAGGTGCCCAGAGCCGACACAGGAAGGGGTGCGACTGTGAACCTCGAATCATTGCTGTCA
CTTTCAGCCAAGGGTCCTCAAACCAGAGATGGCCGTTGCTCCTGGCCAGGGCTGCCGGGC
ACTGGTGGACCAGCAAGAGTCAAGGGTCCTGCCGAGAGGTGTCTGCCTGCCGTCCAACCC
CATGGCTGGAGCCCGACCCTCAGGGAAGGGCAGTGGCCATGCGTGGAGAAGTGAACTGCA
GCATTGGCTGAAGACGCGGGCCCAGGTCCTCCTGGTCTCCCTGTGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55635033|ref|XP_508184.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55635033|ref|XP_508184.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               372-491, + strand, RNAz p=0.881663

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               372-491, + strand, RNAz p=0.881663

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of BC008971, +
               

               
               3' of BC032779, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC008971, +
               

               
               3' of BC032779, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               213-1050, gnl|bosTau2|chr29 (45606271-45607110)
               

               
               213-1050, gnl|Hg17|chr11 (195470-194627)
               

               
               213-1050, gnl|Mm7|chr7 (137271887-137271124)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               213-1050, gnl|bosTau2|chr29 (45606271-45607110)
               

               
               213-1050, gnl|Hg17|chr11 (195470-194627)
               

               
               213-1050, gnl|Mm7|chr7 (137271887-137271124)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	213-1050, gnl\|bosTau2\|chr29 (45606271-45607110)
	213-1050, gnl\|Hg17\|chr11 (195470-194627)
	213-1050, gnl\|Mm7\|chr7 (137271887-137271124)

	amn (0.417711)
	ill (0.175593)
	duo (0.172801)
	cag (0.151194)
	ute (0.132784)
	eep (0.122564)
	cty (0.10408)