Non-Coding RNA Search

Ss1.1-Spl1-SPL010041B12.5

Sequence:


               
               ACACGCCATTCTGATAGTTTAAGCGTACTTTTTGCTTTTCCTGGATAGTCAGAAAGATGT
CGGAGACCGCTCCAGTGGCTCCTGCTGCTCCCGCGCCTGCAGAGAAAACACCTGTAAAGA
AAAAGGCGAAGAAGACGGGCGCAGCTGCTGGGAAACGCAAAGCGTCCGGGCCTCCGGTGT
CCGAGCTCATCACCAAGGCTGTCGCCGCCTCCAAGGAGCGCAACGGCGTGTCTCTGGCCG
CGCTCAAGAAGGCGCTGGCTGCCGCCGGCTACGATGTGGAAAAGAACAACAGCCGAATCA
AGCTGGGGCTTAAAAGCTTGGTGAGCAAGGGCACCCTGGTGCAGACTAAAGGCACTGGCG
CTTCGGGCTCCTTCAAACTCAACAAGAAGGCGGCCACCGGGGAAGCCAAGCCCAAAGCTA
AGAAAGCGGGAGCAGCTAAGCCTAAGAAGTCTGCTGGGGCAGCCAAGAAGCCCAAGAAGG
CTACCGGAGCAGCCACCCCAAAGAAGACCGCCAAGAAGACCCCCAAGAAAGCCAAGAAGC
CGGCAGCGGCAGCTGGCACCAAGAAGGTGGCCAAGAGCCCGAAGAAGGCGAAGGCAGCCA
AGCCGAAAAAGGCTGCTAAGAGCCCGGCCAAGGCCAAAGCCCCCAAGCCCAAGGCAGCCA
AGCCTAAAGCCGCAAAACCCAAGGCTACAAAGGCCAAGAAAGCCGTCTCCAAGAAGAAGT
AAAATTGTGGCGGGACCTCCTGCTTTGCAAACCTAAAGGCTCTTTTCAGAGCCACCCACT
GCTTTCAGGTAAAAGGGCTGGACCTAATGTTTTTCGGTGAATTCTTTTTTAAACTTGCCG
CTTTTATGTGATTGGCTGAGACTTAATGCGCCAGGGGGCGCGCGCGGAACTTTTGAGCGC
TAAATGGCTCGGAAAAGAGCCTAAAGATACTCAGCGCCGGGATAGTGTTCTCAACCCTTT
TCTTGCCATCGGCCTTGTGACTCTTGTTCTACTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACGCCATTCTGATAGTTTAAGCGTACTTTTTGCTTTTCCTGGATAGTCAGAAAGATGT
CGGAGACCGCTCCAGTGGCTCCTGCTGCTCCCGCGCCTGCAGAGAAAACACCTGTAAAGA
AAAAGGCGAAGAAGACGGGCGCAGCTGCTGGGAAACGCAAAGCGTCCGGGCCTCCGGTGT
CCGAGCTCATCACCAAGGCTGTCGCCGCCTCCAAGGAGCGCAACGGCGTGTCTCTGGCCG
CGCTCAAGAAGGCGCTGGCTGCCGCCGGCTACGATGTGGAAAAGAACAACAGCCGAATCA
AGCTGGGGCTTAAAAGCTTGGTGAGCAAGGGCACCCTGGTGCAGACTAAAGGCACTGGCG
CTTCGGGCTCCTTCAAACTCAACAAGAAGGCGGCCACCGGGGAAGCCAAGCCCAAAGCTA
AGAAAGCGGGAGCAGCTAAGCCTAAGAAGTCTGCTGGGGCAGCCAAGAAGCCCAAGAAGG
CTACCGGAGCAGCCACCCCAAAGAAGACCGCCAAGAAGACCCCCAAGAAAGCCAAGAAGC
CGGCAGCGGCAGCTGGCACCAAGAAGGTGGCCAAGAGCCCGAAGAAGGCGAAGGCAGCCA
AGCCGAAAAAGGCTGCTAAGAGCCCGGCCAAGGCCAAAGCCCCCAAGCCCAAGGCAGCCA
AGCCTAAAGCCGCAAAACCCAAGGCTACAAAGGCCAAGAAAGCCGTCTCCAAGAAGAAGT
AAAATTGTGGCGGGACCTCCTGCTTTGCAAACCTAAAGGCTCTTTTCAGAGCCACCCACT
GCTTTCAGGTAAAAGGGCTGGACCTAATGTTTTTCGGTGAATTCTTTTTTAAACTTGCCG
CTTTTATGTGATTGGCTGAGACTTAATGCGCCAGGGGGCGCGCGCGGAACTTTTGAGCGC
TAAATGGCTCGGAAAAGAGCCTAAAGATACTCAGCGCCGGGATAGTGTTCTCAACCCTTT
TCTTGCCATCGGCCTTGTGACTCTTGTTCTACTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53DY6_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53DY6_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               239-398, + strand, RNAz p=0.965786
               

               
               689-804, - strand, RNAz p=0.512338

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-398, + strand, RNAz p=0.965786
               

               
               689-804, - strand, RNAz p=0.512338

ncRNA annotation: 1 entry(ies)

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ncRNA annotation: 1 entry(ies)

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               753-778, , RaveNnA Score=34.28

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               753-778, , RaveNnA Score=34.28

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr12 (1645017-1644212)
               

               
               1-804, gnl|Hg17|chr6 (26343196-26342395)
               

               
               1-804, gnl|Mm7|chr13 (22921027-22921825)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr12 (1645017-1644212)
               

               
               1-804, gnl|Hg17|chr6 (26343196-26342395)
               

               
               1-804, gnl|Mm7|chr13 (22921027-22921825)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mcp (0.170648)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	239-398, + strand, RNAz p=0.965786
	689-804, - strand, RNAz p=0.512338

	1-804, gnl\|bosTau2\|chr12 (1645017-1644212)
	1-804, gnl\|Hg17\|chr6 (26343196-26342395)
	1-804, gnl\|Mm7\|chr13 (22921027-22921825)