Ss1.1-Spl1-SPL010041E10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGAGCGCTGAGGAGGAGAGGCCGACGGCACAGCTGTTACCCTGACGATGGCGGGGACGG CCCTCAAGAGGCTGATGGCCGAGTACAAACAATTAACACTGAATCCCCCGGAAGGAATTG TGGCAGGCCCCATGAATGAAGAGAATTTCTTTGAATGGGAGGCGTTGATCATGGGCCCCG AAGACACCTGTTTTGAGTTTGGGGTTTTTCCGGCCGTCCTGAGCTTCCCGCTGGATTACC CGTTGAGCCCTCCGAAGATGAGGTTTACCTGTGAGATGTTCCACCCCAACATCTACCCCG ACGGCAGAGTTTGCATTTCCATCCTGCACGCCCCGGGCGACGACCCCATGGGCTACGAGA GCAGCGCCGAGCGGTGGAGCCCCGTGCAGAGCGTGGAGAAGATCCTGCTGTCGGTGGTGA GCATGCTGGCAGAGCCCAACGACGAGAGCGGCGCCAACGTGGACGCCTCCAAGATGTGGC GGGACGACCGCGAGCAGTTCTACAAGATCGCCAAGCAGATCGTGCAGAAGTCGCTGGGGC TCTGAGCCTCGCCCGCGCGCAGGCAGACCCACCGCCAGGCGCTGGCCGGTGTTTCTCCTC GGAACGCTTGGTGACAGTGACCTCTGTGCTGGTACCAAAAAAGGCAAGCTTGCAGAACCA CAGCGTCTAGTCTCTCACCCTTCCCAACCCGCGGTCCTCTCCTCTGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGAGCGCTGAGGAGGAGAGGCCGACGGCACAGCTGTTACCCTGACGATGGCGGGGACGG CCCTCAAGAGGCTGATGGCCGAGTACAAACAATTAACACTGAATCCCCCGGAAGGAATTG TGGCAGGCCCCATGAATGAAGAGAATTTCTTTGAATGGGAGGCGTTGATCATGGGCCCCG AAGACACCTGTTTTGAGTTTGGGGTTTTTCCGGCCGTCCTGAGCTTCCCGCTGGATTACC CGTTGAGCCCTCCGAAGATGAGGTTTACCTGTGAGATGTTCCACCCCAACATCTACCCCG ACGGCAGAGTTTGCATTTCCATCCTGCACGCCCCGGGCGACGACCCCATGGGCTACGAGA GCAGCGCCGAGCGGTGGAGCCCCGTGCAGAGCGTGGAGAAGATCCTGCTGTCGGTGGTGA GCATGCTGGCAGAGCCCAACGACGAGAGCGGCGCCAACGTGGACGCCTCCAAGATGTGGC GGGACGACCGCGAGCAGTTCTACAAGATCGCCAAGCAGATCGTGCAGAAGTCGCTGGGGC TCTGAGCCTCGCCCGCGCGCAGGCAGACCCACCGCCAGGCGCTGGCCGGTGTTTCTCCTC GGAACGCTTGGTGACAGTGACCTCTGTGCTGGTACCAAAAAAGGCAAGCTTGCAGAACCA CAGCGTCTAGTCTCTCACCCTTCCCAACCCGCGGTCCTCTCCTCTGCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 430-548, + strand, RNAz p=0.555465 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 430-548, + strand, RNAz p=0.555465 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK122700, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 170-291, gnl|bosTau2|chr1 (94677563-94677442) | |
| 170-291, gnl|canFam2|chr31 (40775360-40775502) | |
| 170-291, gnl|danRer3|chr10 (21118675-21118528) | |
| 170-291, gnl|dasNov1|scaffold_83462 (2312-2430) | |
| 170-291, gnl|echTel1|scaffold_209645 (3351-3493) | |
| 170-291, gnl|fr1|chrUn (291865323-291865454) | |
| 170-291, gnl|galGal2|chr9 (8445791-8445922) | |
| 170-291, gnl|hg17|chr21 (45021626-45021768) | |
| 170-291, gnl|Hg17|chr21 (45021763-45021642) | |
| 170-291, gnl|loxAfr1|scaffold_153409 (1805-1663) | |
| 170-291, gnl|mm7|chr10 (77296181-77296042) | |
| 170-291, gnl|Mm7|chr10 (77296045-77296166) | |
| 170-291, gnl|monDom2|scaffold_189 (1207742-1207888) | |
| 170-291, gnl|oryCun1|scaffold_181029 (717-576) | |
| 170-291, gnl|panTro1|chr22_random (10699968-10699826) | |
| 170-291, gnl|rheMac2|chr3 (1930365-1930223) | |
| 170-291, gnl|rn3|chr20 (11371836-11371975) | |
| 170-291, gnl|tetNig1|chrUn_random (86510447-86510316) | |
| 170-291, gnl|xenTro1|scaffold_203 (1272878-1273037) | |
| 430-706, gnl|bosTau2|chr1 (94671992-94671695) | |
| 430-706, gnl|Hg17|chr21 (45015835-45015549) | |
| 430-706, gnl|Mm7|chr10 (77299032-77299282) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 170-291, gnl|bosTau2|chr1 (94677563-94677442) | |
| 170-291, gnl|canFam2|chr31 (40775360-40775502) | |
| 170-291, gnl|danRer3|chr10 (21118675-21118528) | |
| 170-291, gnl|dasNov1|scaffold_83462 (2312-2430) | |
| 170-291, gnl|echTel1|scaffold_209645 (3351-3493) | |
| 170-291, gnl|fr1|chrUn (291865323-291865454) | |
| 170-291, gnl|galGal2|chr9 (8445791-8445922) | |
| 170-291, gnl|hg17|chr21 (45021626-45021768) | |
| 170-291, gnl|Hg17|chr21 (45021763-45021642) | |
| 170-291, gnl|loxAfr1|scaffold_153409 (1805-1663) | |
| 170-291, gnl|mm7|chr10 (77296181-77296042) | |
| 170-291, gnl|Mm7|chr10 (77296045-77296166) | |
| 170-291, gnl|monDom2|scaffold_189 (1207742-1207888) | |
| 170-291, gnl|oryCun1|scaffold_181029 (717-576) | |
| 170-291, gnl|panTro1|chr22_random (10699968-10699826) | |
| 170-291, gnl|rheMac2|chr3 (1930365-1930223) | |
| 170-291, gnl|rn3|chr20 (11371836-11371975) | |
| 170-291, gnl|tetNig1|chrUn_random (86510447-86510316) | |
| 170-291, gnl|xenTro1|scaffold_203 (1272878-1273037) | |
| 430-706, gnl|bosTau2|chr1 (94671992-94671695) | |
| 430-706, gnl|Hg17|chr21 (45015835-45015549) | |
| 430-706, gnl|Mm7|chr10 (77299032-77299282) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) |