Non-Coding RNA Search

Ss1.1-Spl1-SPL01A010054.5.5

Sequence:


               
               CGGAGACATGCAAGCCACCTGTCTTGGGAGCCAGGCACCCTCAGCCACCCTCTGGGGTCT
AAAAGCCTGAACCGCATCCTTGGAAAAGAACCTACACAATCGCCTTTTGTTTACACTGGT
TATTTATTTATGACTTGAAACGTTTCAGGAACCCAACAGCCATAAACGGAAACGCGCCCT
TCGCGCAGGGCAGGGGCACTGTTCCCCGTCGGAGCCCTGGGCACTTTGAAGCTGCATCTT
GCCGAGGATTTGTAACCTCAAGTCTTCCAGCTGGTGGATCTGGAGCCAGCAAGGACTGTT
CTCCCATGGAGGAGTTTCCCCGGGCTCCCGCTGGACCACACAGGTCTTGGGGCCTGGCAG
CTACCTGGTGCCTCTGCCCAGACAGGGCGCCCACGCGTCTTCGCCCCTCCACCTCTGGGC
CCTCCGTTGACTGAGTTCTCGCCACTCCTGGAGGATGCCCAGGTACCCTCTAGATTCAGG
GATGCTTGCTTTCCACTTGTAAAGGGACTCTTGGGTACGGGAATTCTCTCATCTCTGCTG
TAAAGCGATTTTGTTATAGCGGGTAAGAAAAAAAATTGCCGAACTACTTATTCAACCTCT
ATGGCTAAGGAGAACAGCTCCAGCCCCCGTCAAGTGCAGGGCACCCTGGTCCTTGAGACA
CGTGAAAAAGATCTGAACTTGACTGAGCTCATCCTGGTCGCGGATCAAGATGCAGACAGG
TGCAAGTAATTTGTGCAATTATGAGTAACCTCCTCTGAAGGTGGGTTTAGAGGTGGTGCA
GGACCCACTCTCTCCCACTTACCTTTGAGAACCTGCCCCAAGGACCCAGGTACCAGAAGC
GTGAGGGTTGGGGGGTGAGGTGGCGTCTTCTCCTCTGCCAGTAACTAGCTTGCAGTGGTT
CAGGCTCAGCCTTAGGTGCATCTGAACTTGAGAAATGCAACTTCCCGGGCCTCCCCCAGC
CTTCTGAAGCCAACTCTGGAGATGGGGCCAAGGATCTGGGCTTGCAGAAGCCCCCAGGTG
AGCTTACCACATTAACAGCCGACTCAGGCTCCCCCGAGCTACACTGTTTACCTCTCAAGG
CCTTGCGGGGCTCAGCAGATCCAGAGGTAGCTGCTGTCTTGAGCCCAGGTGCATGGCCTG
CAGAAAAGCCCAGGAGCCAACTGTTTTTGGGTAAGGGGCATGGCCCAGAGCAATCCGTGC
CATCCTGAGCCCCACGGGCCACCCCGGTTCCCAATCAACTGCTCCATTCATCAGGCCCAC
CTCACCTGTTTGGAAATAGGAAAAGCCGAGGGTATGTCTGTTATTTATTTAAATGAGCCT
GTGCTTCTCGGAATGGGCAGCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGACATGCAAGCCACCTGTCTTGGGAGCCAGGCACCCTCAGCCACCCTCTGGGGTCT
AAAAGCCTGAACCGCATCCTTGGAAAAGAACCTACACAATCGCCTTTTGTTTACACTGGT
TATTTATTTATGACTTGAAACGTTTCAGGAACCCAACAGCCATAAACGGAAACGCGCCCT
TCGCGCAGGGCAGGGGCACTGTTCCCCGTCGGAGCCCTGGGCACTTTGAAGCTGCATCTT
GCCGAGGATTTGTAACCTCAAGTCTTCCAGCTGGTGGATCTGGAGCCAGCAAGGACTGTT
CTCCCATGGAGGAGTTTCCCCGGGCTCCCGCTGGACCACACAGGTCTTGGGGCCTGGCAG
CTACCTGGTGCCTCTGCCCAGACAGGGCGCCCACGCGTCTTCGCCCCTCCACCTCTGGGC
CCTCCGTTGACTGAGTTCTCGCCACTCCTGGAGGATGCCCAGGTACCCTCTAGATTCAGG
GATGCTTGCTTTCCACTTGTAAAGGGACTCTTGGGTACGGGAATTCTCTCATCTCTGCTG
TAAAGCGATTTTGTTATAGCGGGTAAGAAAAAAAATTGCCGAACTACTTATTCAACCTCT
ATGGCTAAGGAGAACAGCTCCAGCCCCCGTCAAGTGCAGGGCACCCTGGTCCTTGAGACA
CGTGAAAAAGATCTGAACTTGACTGAGCTCATCCTGGTCGCGGATCAAGATGCAGACAGG
TGCAAGTAATTTGTGCAATTATGAGTAACCTCCTCTGAAGGTGGGTTTAGAGGTGGTGCA
GGACCCACTCTCTCCCACTTACCTTTGAGAACCTGCCCCAAGGACCCAGGTACCAGAAGC
GTGAGGGTTGGGGGGTGAGGTGGCGTCTTCTCCTCTGCCAGTAACTAGCTTGCAGTGGTT
CAGGCTCAGCCTTAGGTGCATCTGAACTTGAGAAATGCAACTTCCCGGGCCTCCCCCAGC
CTTCTGAAGCCAACTCTGGAGATGGGGCCAAGGATCTGGGCTTGCAGAAGCCCCCAGGTG
AGCTTACCACATTAACAGCCGACTCAGGCTCCCCCGAGCTACACTGTTTACCTCTCAAGG
CCTTGCGGGGCTCAGCAGATCCAGAGGTAGCTGCTGTCTTGAGCCCAGGTGCATGGCCTG
CAGAAAAGCCCAGGAGCCAACTGTTTTTGGGTAAGGGGCATGGCCCAGAGCAATCCGTGC
CATCCTGAGCCCCACGGGCCACCCCGGTTCCCAATCAACTGCTCCATTCATCAGGCCCAC
CTCACCTGTTTGGAAATAGGAAAAGCCGAGGGTATGTCTGTTATTTATTTAAATGAGCCT
GTGCTTCTCGGAATGGGCAGCACG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               2-208, gnl|bosTau2|chr16 (30887971-30888173)
               

               
               2-208, gnl|Hg17|chr1 (9721394-9721598)
               

               
               2-208, gnl|Mm7|chr4 (148640131-148639928)
               


               
               504-1343, gnl|bosTau2|chr16 (30888477-30889358)
               

               
               504-1343, gnl|Hg17|chr1 (9721865-9723049)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-208, gnl|bosTau2|chr16 (30887971-30888173)
               

               
               2-208, gnl|Hg17|chr1 (9721394-9721598)
               

               
               2-208, gnl|Mm7|chr4 (148640131-148639928)
               


               
               504-1343, gnl|bosTau2|chr16 (30888477-30889358)
               

               
               504-1343, gnl|Hg17|chr1 (9721865-9723049)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               cbl (0.344392)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               cly (0.120642)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               cly (0.120642)

	2-208, gnl\|bosTau2\|chr16 (30887971-30888173)
	2-208, gnl\|Hg17\|chr1 (9721394-9721598)
	2-208, gnl\|Mm7\|chr4 (148640131-148639928)

	504-1343, gnl\|bosTau2\|chr16 (30888477-30889358)
	504-1343, gnl\|Hg17\|chr1 (9721865-9723049)

	cbl (0.344392)
	duo (0.172801)
	nco (0.161734)
	csp (0.161186)
	cag (0.151194)
	cly (0.120642)