Non-Coding RNA Search

Ss1.1-Spl1-SPL01A010058.5

Sequence:


               
               CCAGAGTGTTTTGTGGTTGGGAAAGAACCACCAAAGATCTCAAATAAAGTTGACGTCTGG
TCCGTGGGTGTGATCTTCTACCAGTGTCTCTATGGAAGGAAGCCTTTTGGTCATAACCAG
TCCCAGCAAGACATTCTACAAGAAAATACTATTCTCAAAGCTACTGAGGTGCAGTTCCCA
CCAAAGCCAGTAGTAACACCTGAAGCAAAGGCGTTTATTCGACGATGCTTGGCCTACCGA
AAGGAGGACCGCATCGACGTCCAGCAGCTGGCCTGTGACCCCTACTTGCTTCCTCACATC
CGAAAGTCAGTCTCCACAAGTAGCCCTGCTGGAGCTGCTATTGCATCAACCTCTGGGGCG
TCCAATAACAGTTCTTCGAATTGAGACCCACTCCTAGGCCACAAACTGTTCAACACACAC
AGAGTGGACAAATGGCATTCAGCAGCGGGTTTGGAACATAGCGAATCCGAATGGATCTCA
TGAAACCTGTACCAGGTGCTTTTATTTTCTTGCTTTTTTTCCCATCCATAGAGCATGACA
GCATCGATTCTCATTGAGGAGAAACCTCGGGCAGCTCTGGCCAGGCCTCGTAGGAAAAGG
CCCCGCCCCAGGTTCCGGCGTCAAGGGCCACTGCATGTGGCTGCTCTGAGTGAGGAAAAA
ATTAAAAAGAAAAACTGGTTCCATGTACTGTGAACTTGAAAACATGCAGACTCAGGGGGG
TCCCTGATGCAGTGCTTCAGATGAAGAATGTGGACTTGAAAATACAGACTGGGCTAGTCC
AGTGTCTATATTTAAACTTGTTCTTTTCTTTTAATAAAATTTAGGTAACATCTCCTGAAA
AGCTTGTAGCACAAAGGCTCAGCTGGGGATGGTGTTTGACTTCGGAGGAAAAAAGTTGCT
ATTGCCCGTTAAAGGCACTAGAGTTAGTGTTTTATCCCTAAATAATTTCAATTTTTAAAA
ACATGCAACTTCCCTCCCCCCTTTTTTATTTTTGAAAGAACACATTTGGTCAGAAAGCGA
AACCCCTGTTAGCAAGTTCGTGGCCGTGTTCATTCCAGTCAGACGCAGCTTTCGCGCCGT
CCGGTCTCCCGTCTGCAGTTCCTTCCCCATCTCCGTAGGGGAAAACTGAGGGGGGTACTG
AGACGTGGGGGGTTTGCCATTGGACAAAGAATGAGGTTAGAGCTCTGCAGCTTGGAGTCT
TTCTAGGTTTTCAACTATTTCTTCACAATTTGAACACTTGACGGTTGTCCCTTTTAATTT
ATTTGAAGTGCTATTTTTTTAAATAAAGGCTCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAGTGTTTTGTGGTTGGGAAAGAACCACCAAAGATCTCAAATAAAGTTGACGTCTGG
TCCGTGGGTGTGATCTTCTACCAGTGTCTCTATGGAAGGAAGCCTTTTGGTCATAACCAG
TCCCAGCAAGACATTCTACAAGAAAATACTATTCTCAAAGCTACTGAGGTGCAGTTCCCA
CCAAAGCCAGTAGTAACACCTGAAGCAAAGGCGTTTATTCGACGATGCTTGGCCTACCGA
AAGGAGGACCGCATCGACGTCCAGCAGCTGGCCTGTGACCCCTACTTGCTTCCTCACATC
CGAAAGTCAGTCTCCACAAGTAGCCCTGCTGGAGCTGCTATTGCATCAACCTCTGGGGCG
TCCAATAACAGTTCTTCGAATTGAGACCCACTCCTAGGCCACAAACTGTTCAACACACAC
AGAGTGGACAAATGGCATTCAGCAGCGGGTTTGGAACATAGCGAATCCGAATGGATCTCA
TGAAACCTGTACCAGGTGCTTTTATTTTCTTGCTTTTTTTCCCATCCATAGAGCATGACA
GCATCGATTCTCATTGAGGAGAAACCTCGGGCAGCTCTGGCCAGGCCTCGTAGGAAAAGG
CCCCGCCCCAGGTTCCGGCGTCAAGGGCCACTGCATGTGGCTGCTCTGAGTGAGGAAAAA
ATTAAAAAGAAAAACTGGTTCCATGTACTGTGAACTTGAAAACATGCAGACTCAGGGGGG
TCCCTGATGCAGTGCTTCAGATGAAGAATGTGGACTTGAAAATACAGACTGGGCTAGTCC
AGTGTCTATATTTAAACTTGTTCTTTTCTTTTAATAAAATTTAGGTAACATCTCCTGAAA
AGCTTGTAGCACAAAGGCTCAGCTGGGGATGGTGTTTGACTTCGGAGGAAAAAAGTTGCT
ATTGCCCGTTAAAGGCACTAGAGTTAGTGTTTTATCCCTAAATAATTTCAATTTTTAAAA
ACATGCAACTTCCCTCCCCCCTTTTTTATTTTTGAAAGAACACATTTGGTCAGAAAGCGA
AACCCCTGTTAGCAAGTTCGTGGCCGTGTTCATTCCAGTCAGACGCAGCTTTCGCGCCGT
CCGGTCTCCCGTCTGCAGTTCCTTCCCCATCTCCGTAGGGGAAAACTGAGGGGGGTACTG
AGACGTGGGGGGTTTGCCATTGGACAAAGAATGAGGTTAGAGCTCTGCAGCTTGGAGTCT
TTCTAGGTTTTCAACTATTTCTTCACAATTTGAACACTTGACGGTTGTCCCTTTTAATTT
ATTTGAAGTGCTATTTTTTTAAATAAAGGCTCATCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7PRV1_ANOGA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7PRV1_ANOGA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               684-803, - strand, RNAz p=0.979471
               

               
               884-1002, - strand, RNAz p=0.946209
               

               
               1082-1197, + strand, RNAz p=0.962307

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               684-803, - strand, RNAz p=0.979471
               

               
               884-1002, - strand, RNAz p=0.946209
               

               
               1082-1197, + strand, RNAz p=0.962307

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1084-1154, + strand, RNAmicro p=0.999272

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1084-1154, + strand, RNAmicro p=0.999272

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AX775747, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AX775747, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               209-1296, gnl|bosTau2|chr19 (39427729-39428818)
               

               
               209-1296, gnl|Hg17|chr17 (58043483-58044574)
               

               
               209-1296, gnl|Mm7|chr11 (105390124-105391209)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               209-1296, gnl|bosTau2|chr19 (39427729-39428818)
               

               
               209-1296, gnl|Hg17|chr17 (58043483-58044574)
               

               
               209-1296, gnl|Mm7|chr11 (105390124-105391209)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cmu (0.186393)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	684-803, - strand, RNAz p=0.979471
	884-1002, - strand, RNAz p=0.946209
	1082-1197, + strand, RNAz p=0.962307

	209-1296, gnl\|bosTau2\|chr19 (39427729-39428818)
	209-1296, gnl\|Hg17\|chr17 (58043483-58044574)
	209-1296, gnl\|Mm7\|chr11 (105390124-105391209)

	cmu (0.186393)
	fat (0.147427)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	thg (0.126791)
	jca (0.11396)
	nbm (0.0993246)