Ss1.1-Spl1-SPL01A010074.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTCGCCTTGGTATGCTCCAAGATGGCGTCCTCCATAGTGCGGCGCGGGATCCTGCGGGC GCGGAAAGTGTCGCTGCCTCAACTCTCCCTGGCAGGTAGAAGATGCCTGCTTTCTGCAGC GTATGTGGACAGCCATAAATGGGAAGCAAGAGATAAAGAAGATTGTCACCTCGCGGATCT AGCATCTTTAATGGATAAAACATATGAGAGAAAGTTGCCTGTTAGTTCTTTAACAATATC ACGGTTTGTGGACAACATTGCATCTCGAGAAGATATAGACCACGCGGAGTATTATCTTTA CAAATTTCGACACAGCCCCAACTGCTGGTACTTGAGAGATTGGACTATCCACACATGGAT TAGGCAGTGTCTAAAATATGGTGCACAGGACAAAGCCTTATACACCCTTAAAAATAAGGT CCAATATGGCATTTTCCCAGATAACTATACATTTAACTTACTGATGGATTATTTCATAAA GAAAGAAAATTACAAAGATGCTTTATCCGTGGTTTTTGAGATCATGATGCAAGAAGCTTT TGAAGTCCCTTCCACCCAGCTCCTCTCCCTCTATGTTTTGTACCACTGCCTTGCAGAGAA GACAGACTTGAGTTGGGAAGAGGAGAGGAACTTTGGTGCATCCCTGTTACTCCCAGGTCT AAAGCAAAAGAACTCAGTGGGGCTGAGTTCCCAGCTGTATGGCTATGCACTTCTTGGGAA GGTAGAATTGCAGCAAGGGCTGAGGGCTGTGTACTGCAACATGCCGCTGCTCTGGCAACC AGGCTACCTCCACAGAGCCCTTCAAGTGATGGAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTCGCCTTGGTATGCTCCAAGATGGCGTCCTCCATAGTGCGGCGCGGGATCCTGCGGGC GCGGAAAGTGTCGCTGCCTCAACTCTCCCTGGCAGGTAGAAGATGCCTGCTTTCTGCAGC GTATGTGGACAGCCATAAATGGGAAGCAAGAGATAAAGAAGATTGTCACCTCGCGGATCT AGCATCTTTAATGGATAAAACATATGAGAGAAAGTTGCCTGTTAGTTCTTTAACAATATC ACGGTTTGTGGACAACATTGCATCTCGAGAAGATATAGACCACGCGGAGTATTATCTTTA CAAATTTCGACACAGCCCCAACTGCTGGTACTTGAGAGATTGGACTATCCACACATGGAT TAGGCAGTGTCTAAAATATGGTGCACAGGACAAAGCCTTATACACCCTTAAAAATAAGGT CCAATATGGCATTTTCCCAGATAACTATACATTTAACTTACTGATGGATTATTTCATAAA GAAAGAAAATTACAAAGATGCTTTATCCGTGGTTTTTGAGATCATGATGCAAGAAGCTTT TGAAGTCCCTTCCACCCAGCTCCTCTCCCTCTATGTTTTGTACCACTGCCTTGCAGAGAA GACAGACTTGAGTTGGGAAGAGGAGAGGAACTTTGGTGCATCCCTGTTACTCCCAGGTCT AAAGCAAAAGAACTCAGTGGGGCTGAGTTCCCAGCTGTATGGCTATGCACTTCTTGGGAA GGTAGAATTGCAGCAAGGGCTGAGGGCTGTGTACTGCAACATGCCGCTGCTCTGGCAACC AGGCTACCTCCACAGAGCCCTTCAAGTGATGGAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 304-420, - strand, RNAz p=0.547201 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 304-420, - strand, RNAz p=0.547201 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 1-112, gnl|bosTau2|chr20 (6532264-6532155) | |
| 1-112, gnl|canFam2|chr2 (58223868-58224114) | |
| 1-112, gnl|dasNov1|scaffold_2110 (30702-30418) | |
| 1-112, gnl|hg17|chr5 (71651552-71651814) | |
| 1-112, gnl|Hg17|chr5 (71651826-71651725) | |
| 1-112, gnl|loxAfr1|scaffold_141263 (210-484) | |
| 1-112, gnl|mm7|chr13 (96414855-96414592) | |
| 1-112, gnl|Mm7|chr13 (96414578-96414683) | |
| 1-112, gnl|monDom2|scaffold_60 (5313010-5313284) | |
| 1-112, gnl|oryCun1|scaffold_177548 (1232-954) | |
| 1-112, gnl|panTro1|chr4 (43810918-43810656) | |
| 1-112, gnl|rheMac2|chr6 (68468641-68468903) | |
| 1-112, gnl|rn3|chr2 (30258845-30258583) | |
| 304-420, gnl|bosTau2|chr20 (6451732-6451616) | |
| 304-420, gnl|canFam2|chr2 (58153630-58153777) | |
| 304-420, gnl|echTel1|scaffold_315756 (12581-12431) | |
| 304-420, gnl|fr1|chrUn (46287578-46287459) | |
| 304-420, gnl|galGal2|chrZ (11012381-11012512) | |
| 304-420, gnl|hg17|chr5 (71569596-71569745) | |
| 304-420, gnl|Hg17|chr5 (71569711-71569595) | |
| 304-420, gnl|loxAfr1|scaffold_3489 (67383-67233) | |
| 304-420, gnl|mm7|chr13 (96470176-96470032) | |
| 304-420, gnl|Mm7|chr13 (96470059-96470175) | |
| 304-420, gnl|monDom2|scaffold_60 (5204934-5205081) | |
| 304-420, gnl|oryCun1|scaffold_214759 (40405-40554) | |
| 304-420, gnl|panTro1|chr4 (43892679-43892530) | |
| 304-420, gnl|rheMac2|chr6 (68387752-68387901) | |
| 304-420, gnl|rn3|chr2 (30311428-30311285) | |
| 304-420, gnl|tetNig1|chr12 (9185122-9184978) | |
| 496-613, gnl|bosTau2|chr20 (6441932-6441815) | |
| 496-613, gnl|canFam2|chr2 (58147626-58147777) | |
| 496-613, gnl|dasNov1|scaffold_194723 (3678-3844) | |
| 496-613, gnl|echTel1|scaffold_11580 (643-810) | |
| 496-613, gnl|fr1|chrUn (46288211-46288068) | |
| 496-613, gnl|galGal2|chrZ (11010177-11010344) | |
| 496-613, gnl|hg17|chr5 (71563992-71564157) | |
| 496-613, gnl|Hg17|chr5 (71564143-71564026) | |
| 496-613, gnl|loxAfr1|scaffold_3489 (71589-71423) | |
| 496-613, gnl|mm7|chr13 (96474936-96474770) | |
| 496-613, gnl|Mm7|chr13 (96474783-96474900) | |
| 496-613, gnl|monDom2|scaffold_60 (5181098-5181262) | |
| 496-613, gnl|oryCun1|scaffold_214759 (34819-34956) | |
| 496-613, gnl|panTro1|chr4 (43898286-43898120) | |
| 496-613, gnl|rheMac2|chr6 (68382137-68382303) | |
| 496-613, gnl|rn3|chr2 (30315731-30315566) | |
| 496-613, gnl|tetNig1|chr12 (9185747-9185622) | |
| 614-726, gnl|bosTau2|chr20 (6437756-6437644) | |
| 614-726, gnl|Hg17|chr5 (71559951-71559839) | |
| 614-726, gnl|Mm7|chr13 (96479606-96479719) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-112, gnl|bosTau2|chr20 (6532264-6532155) | |
| 1-112, gnl|canFam2|chr2 (58223868-58224114) | |
| 1-112, gnl|dasNov1|scaffold_2110 (30702-30418) | |
| 1-112, gnl|hg17|chr5 (71651552-71651814) | |
| 1-112, gnl|Hg17|chr5 (71651826-71651725) | |
| 1-112, gnl|loxAfr1|scaffold_141263 (210-484) | |
| 1-112, gnl|mm7|chr13 (96414855-96414592) | |
| 1-112, gnl|Mm7|chr13 (96414578-96414683) | |
| 1-112, gnl|monDom2|scaffold_60 (5313010-5313284) | |
| 1-112, gnl|oryCun1|scaffold_177548 (1232-954) | |
| 1-112, gnl|panTro1|chr4 (43810918-43810656) | |
| 1-112, gnl|rheMac2|chr6 (68468641-68468903) | |
| 1-112, gnl|rn3|chr2 (30258845-30258583) | |
| 304-420, gnl|bosTau2|chr20 (6451732-6451616) | |
| 304-420, gnl|canFam2|chr2 (58153630-58153777) | |
| 304-420, gnl|echTel1|scaffold_315756 (12581-12431) | |
| 304-420, gnl|fr1|chrUn (46287578-46287459) | |
| 304-420, gnl|galGal2|chrZ (11012381-11012512) | |
| 304-420, gnl|hg17|chr5 (71569596-71569745) | |
| 304-420, gnl|Hg17|chr5 (71569711-71569595) | |
| 304-420, gnl|loxAfr1|scaffold_3489 (67383-67233) | |
| 304-420, gnl|mm7|chr13 (96470176-96470032) | |
| 304-420, gnl|Mm7|chr13 (96470059-96470175) | |
| 304-420, gnl|monDom2|scaffold_60 (5204934-5205081) | |
| 304-420, gnl|oryCun1|scaffold_214759 (40405-40554) | |
| 304-420, gnl|panTro1|chr4 (43892679-43892530) | |
| 304-420, gnl|rheMac2|chr6 (68387752-68387901) | |
| 304-420, gnl|rn3|chr2 (30311428-30311285) | |
| 304-420, gnl|tetNig1|chr12 (9185122-9184978) | |
| 496-613, gnl|bosTau2|chr20 (6441932-6441815) | |
| 496-613, gnl|canFam2|chr2 (58147626-58147777) | |
| 496-613, gnl|dasNov1|scaffold_194723 (3678-3844) | |
| 496-613, gnl|echTel1|scaffold_11580 (643-810) | |
| 496-613, gnl|fr1|chrUn (46288211-46288068) | |
| 496-613, gnl|galGal2|chrZ (11010177-11010344) | |
| 496-613, gnl|hg17|chr5 (71563992-71564157) | |
| 496-613, gnl|Hg17|chr5 (71564143-71564026) | |
| 496-613, gnl|loxAfr1|scaffold_3489 (71589-71423) | |
| 496-613, gnl|mm7|chr13 (96474936-96474770) | |
| 496-613, gnl|Mm7|chr13 (96474783-96474900) | |
| 496-613, gnl|monDom2|scaffold_60 (5181098-5181262) | |
| 496-613, gnl|oryCun1|scaffold_214759 (34819-34956) | |
| 496-613, gnl|panTro1|chr4 (43898286-43898120) | |
| 496-613, gnl|rheMac2|chr6 (68382137-68382303) | |
| 496-613, gnl|rn3|chr2 (30315731-30315566) | |
| 496-613, gnl|tetNig1|chr12 (9185747-9185622) | |
| 614-726, gnl|bosTau2|chr20 (6437756-6437644) | |
| 614-726, gnl|Hg17|chr5 (71559951-71559839) | |
| 614-726, gnl|Mm7|chr13 (96479606-96479719) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) |