Non-Coding RNA Search

Ss1.1-Spl1-SPL01A030047.5

Sequence:


               
               CTGGAGGTCTCAGAACTGGAAGGCAACCTGCAGACACTGAGGAATTCCAACTCTACTTAA
CAGGAATCATTCCTTGAGCGGACAATACTGAATCCCCTCCCATCGTCCTCCCTCCCCTGT
CCTCAATACTTCACCCCGCCCCCTACCAGCCTGGGGACAGGTGCCCCGACTTCCCCACCC
CTCCACCCCACTTTCCCCAGCTTCAGGGACCAGAGGGCCCGAATCACAAGGCCCCCTTTA
GGTGGCCCGGGCAACACAGGTGGTGGCAGGAAGGATGGCCTCCTCCTTGCCCATGGGGCT
GAGGCATGGGCCATGGGATGCTAAAGGGCTGGCCTGGGTGGTGGATGGACACAAGGACCT
GCAGACCAAACTGCCAGACTTTACAACCTCCAGCCTTTGTCTCTGGACCGGACTGGGGCT
GGGGGCTCTTCCAGCATCTCACCATCTGGAGGCTGCTCCCTGCTCACGGGGCTCCTGGGT
GGCCCCTGGGCCTCTTGACTTGAGCTTCTACCTTCTTGGCCCTTCCCCCCTCCCTCATCA
TTGTGCTGTTCTGTTGCATTCTGACCCTCCTGCTGGGAGGGGCTGCCTCCACACCTCCTC
CCACCCCCATCCCTCTGCCCTCCCAGGAGGGCCAGAGTCCACCCAGAGGCTGGAGGCTGG
GCCTGGCCCTGCACTGATTTCTCACGCATCCTTCGTGGAAAGGGGAGCGTCCTGGACACC
TGGTGTCCAGCTCCCCCTTTTCCTGGGGCAACAGCCCTTAATTGCTCCTTGTGCCTCCCC
TCCCCCAGGTGCCAAATAGCCATAACCTCCTCCTAGAACTGTTCTGCGGCCTCTCCGGGG
TCCAGGTTTCCTGGCCAAGCCTGGCAACACAAGAGAGGAGAGGAGGTCAGCTTAGGGGGA
CCCGGTTTTGGGCAAGGGGAACATTTCTCACCTGGAGAGCCAGGCCCTGTCCTGCCCTAC
CCAGGGCTCCACCTGGAAGCCTTGTACTAACATCGCAGAGATTCAGCCTCACCCCCCACC
CCAGTTTTCCAATGTTCAGACCGGAGGGCAAAATTTTACTCCTCCTCCTCCTCATCTCTT
TGGAGACCAGGGCTGCCCTGCTGGCAGCCTGCTTTCTAAATGAAATCGACGCCGTTTCCC
CACTTGAACCCCAAATTGGGGCTTGGACCAAGGGAGGTGAGACCCGCCCCCCACGTCCCC
TCCCCTTTCAGAATCCATCTCTCATTTTCGCTCTTCCTCGTNGCCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAGGTCTCAGAACTGGAAGGCAACCTGCAGACACTGAGGAATTCCAACTCTACTTAA
CAGGAATCATTCCTTGAGCGGACAATACTGAATCCCCTCCCATCGTCCTCCCTCCCCTGT
CCTCAATACTTCACCCCGCCCCCTACCAGCCTGGGGACAGGTGCCCCGACTTCCCCACCC
CTCCACCCCACTTTCCCCAGCTTCAGGGACCAGAGGGCCCGAATCACAAGGCCCCCTTTA
GGTGGCCCGGGCAACACAGGTGGTGGCAGGAAGGATGGCCTCCTCCTTGCCCATGGGGCT
GAGGCATGGGCCATGGGATGCTAAAGGGCTGGCCTGGGTGGTGGATGGACACAAGGACCT
GCAGACCAAACTGCCAGACTTTACAACCTCCAGCCTTTGTCTCTGGACCGGACTGGGGCT
GGGGGCTCTTCCAGCATCTCACCATCTGGAGGCTGCTCCCTGCTCACGGGGCTCCTGGGT
GGCCCCTGGGCCTCTTGACTTGAGCTTCTACCTTCTTGGCCCTTCCCCCCTCCCTCATCA
TTGTGCTGTTCTGTTGCATTCTGACCCTCCTGCTGGGAGGGGCTGCCTCCACACCTCCTC
CCACCCCCATCCCTCTGCCCTCCCAGGAGGGCCAGAGTCCACCCAGAGGCTGGAGGCTGG
GCCTGGCCCTGCACTGATTTCTCACGCATCCTTCGTGGAAAGGGGAGCGTCCTGGACACC
TGGTGTCCAGCTCCCCCTTTTCCTGGGGCAACAGCCCTTAATTGCTCCTTGTGCCTCCCC
TCCCCCAGGTGCCAAATAGCCATAACCTCCTCCTAGAACTGTTCTGCGGCCTCTCCGGGG
TCCAGGTTTCCTGGCCAAGCCTGGCAACACAAGAGAGGAGAGGAGGTCAGCTTAGGGGGA
CCCGGTTTTGGGCAAGGGGAACATTTCTCACCTGGAGAGCCAGGCCCTGTCCTGCCCTAC
CCAGGGCTCCACCTGGAAGCCTTGTACTAACATCGCAGAGATTCAGCCTCACCCCCCACC
CCAGTTTTCCAATGTTCAGACCGGAGGGCAAAATTTTACTCCTCCTCCTCCTCATCTCTT
TGGAGACCAGGGCTGCCCTGCTGGCAGCCTGCTTTCTAAATGAAATCGACGCCGTTTCCC
CACTTGAACCCCAAATTGGGGCTTGGACCAAGGGAGGTGAGACCCGCCCCCCACGTCCCC
TCCCCTTTCAGAATCCATCTCTCATTTTCGCTCTTCCTCGTNGCCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14250279|gb|AAH08564.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14250279|gb|AAH08564.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               44-759, - strand, RNAz p=0.993704
               

               
               917-1248, - strand, RNAz p=0.994274

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-759, - strand, RNAz p=0.993704
               

               
               917-1248, - strand, RNAz p=0.994274

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-1248, gnl|bosTau2|chr19 (29235832-29237056)
               

               
               5-1248, gnl|Hg17|chr17 (45567750-45566473)
               

               
               5-1248, gnl|Mm7|chr11 (95114342-95115551)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1248, gnl|bosTau2|chr19 (29235832-29237056)
               

               
               5-1248, gnl|Hg17|chr17 (45567750-45566473)
               

               
               5-1248, gnl|Mm7|chr11 (95114342-95115551)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	44-759, - strand, RNAz p=0.993704
	917-1248, - strand, RNAz p=0.994274

	5-1248, gnl\|bosTau2\|chr19 (29235832-29237056)
	5-1248, gnl\|Hg17\|chr17 (45567750-45566473)
	5-1248, gnl\|Mm7\|chr11 (95114342-95115551)