Non-Coding RNA Search

Ss1.1-Spl1-SPL01A030097.5

Sequence:


               
               AACCCAGCTGCAGAAGCGGCCGCCACCTCCCATGCACAAGGTGTCTCTTCGGAAAAGAAA
CCTGAGCCCCAGGGAGGCGGCGCGGAGCGATCGGGGCAGGGCTGGCGGGAACCGCGAGGG
AGTGCGCTGGGCACTGCTCGAGGACCAGCGGGAGCTCGGCTGGGCTGCAGAGGACCCTGG
AGACCTGCCCCTGAGATCCCGGCTCCACGCTCTCCTCGCGTTTTACAGATTCCCCTTCCC
CGTGACTACATCTCCCCAAAACGGAGCCTTTATATGAAGAGAAGGTGAGGGAGCTGGGGC
AACCAGGACTTTCCCGGGCACCCAAGATGCGCTCCATTAGGAAGAGGTGGACGATCTGCA
CGATAAGTCTGCTCCTGATCTTTTATAAGACAAAAGAAATAGCAAGAACTGAGGAGCACC
AGGAGACGCAACTCATCGGAGATGGCGAGCTGTGTTTGAGTCGATCACTTGTCAATAGTT
CAGATAAAATCATTCGAAAGGCTGGCTCTTCAATCTTCCAGCATTCTGTAGAAGGTTGGA
AAATCAATTCCTCTTTGGTCCTGGAGATAAGGAAGAACATTCTTCGTTTCCTTGATGCAG
AACGCGATGTCTCTGTGGTCAAGAGCAGTTTTAAGCCTGGTGATGTCATACACTATGTTC
TGGATAGGCGCCGGACACTAAATATTTCTCAGGATCTGCACAGCCTCCTACCTGAAGTTT
CACCAATGAAAAATCGCAGATTTAAGACCTGCGCAGTTGTTGGGAATTCTGGCATTCTGC
TAGATAGTGAATGTGGAAAAGAGATTGACAGTCACAATTTTGTAATAAGGTGTAATCTAC
CCCCTGTGGTGGAGTTTGCTGCAGATGTGGGAACTAAATCAGATTTTATTACCATGAATC
CATCAGTTGTACAAAGAGCATTTGGAGGCTTTCGGAATGAAAGTGACAGAGAAAAATTTG
TGCACAGACTTTCCATGCTGAATGACAGTGTCCTTTGGATCCCTGCTTTCATGGTCAAAG
GAGGAGAGAAGCACGTGGAGTGGGTTAATGCATTAATCCTTAAGAATAAACTGAAAGTGC
GAACTGCCTATCCATCACTGAGACTTATTCATGCTGTCAGAGGTTACTGGCTGACAAACA
AAGTTCCTATCAAACGACCCAGCACCGGTCTGCTCATGTATACACTTGCCACGAGATTCT
GTGATGAAATTCACCTGTATGGATTCTGGCCGTTCCCTAAGGATTTGAATGGAAAAGCTG
TCAAATATCATTACTATGATGACTTAAAATACAGGTACTTTTCCAATGCAAGTCCTCATA
GAATGCCATTAGAATTCAAAACATTAAATGTGCTGCATAATAGAGGCGCTCTGAAACTGA
CAACAGGAAAGTGCGTAAAGCAATAAAGCACATCCGAAACATACAAACTGGATATGCACT
TCTTTTCTGAAGATGCTTCCTAAGATTTGAAAATAGGATCCAAAACAAGACTGGGTTTCA
GCATCCACCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCCAGCTGCAGAAGCGGCCGCCACCTCCCATGCACAAGGTGTCTCTTCGGAAAAGAAA
CCTGAGCCCCAGGGAGGCGGCGCGGAGCGATCGGGGCAGGGCTGGCGGGAACCGCGAGGG
AGTGCGCTGGGCACTGCTCGAGGACCAGCGGGAGCTCGGCTGGGCTGCAGAGGACCCTGG
AGACCTGCCCCTGAGATCCCGGCTCCACGCTCTCCTCGCGTTTTACAGATTCCCCTTCCC
CGTGACTACATCTCCCCAAAACGGAGCCTTTATATGAAGAGAAGGTGAGGGAGCTGGGGC
AACCAGGACTTTCCCGGGCACCCAAGATGCGCTCCATTAGGAAGAGGTGGACGATCTGCA
CGATAAGTCTGCTCCTGATCTTTTATAAGACAAAAGAAATAGCAAGAACTGAGGAGCACC
AGGAGACGCAACTCATCGGAGATGGCGAGCTGTGTTTGAGTCGATCACTTGTCAATAGTT
CAGATAAAATCATTCGAAAGGCTGGCTCTTCAATCTTCCAGCATTCTGTAGAAGGTTGGA
AAATCAATTCCTCTTTGGTCCTGGAGATAAGGAAGAACATTCTTCGTTTCCTTGATGCAG
AACGCGATGTCTCTGTGGTCAAGAGCAGTTTTAAGCCTGGTGATGTCATACACTATGTTC
TGGATAGGCGCCGGACACTAAATATTTCTCAGGATCTGCACAGCCTCCTACCTGAAGTTT
CACCAATGAAAAATCGCAGATTTAAGACCTGCGCAGTTGTTGGGAATTCTGGCATTCTGC
TAGATAGTGAATGTGGAAAAGAGATTGACAGTCACAATTTTGTAATAAGGTGTAATCTAC
CCCCTGTGGTGGAGTTTGCTGCAGATGTGGGAACTAAATCAGATTTTATTACCATGAATC
CATCAGTTGTACAAAGAGCATTTGGAGGCTTTCGGAATGAAAGTGACAGAGAAAAATTTG
TGCACAGACTTTCCATGCTGAATGACAGTGTCCTTTGGATCCCTGCTTTCATGGTCAAAG
GAGGAGAGAAGCACGTGGAGTGGGTTAATGCATTAATCCTTAAGAATAAACTGAAAGTGC
GAACTGCCTATCCATCACTGAGACTTATTCATGCTGTCAGAGGTTACTGGCTGACAAACA
AAGTTCCTATCAAACGACCCAGCACCGGTCTGCTCATGTATACACTTGCCACGAGATTCT
GTGATGAAATTCACCTGTATGGATTCTGGCCGTTCCCTAAGGATTTGAATGGAAAAGCTG
TCAAATATCATTACTATGATGACTTAAAATACAGGTACTTTTCCAATGCAAGTCCTCATA
GAATGCCATTAGAATTCAAAACATTAAATGTGCTGCATAATAGAGGCGCTCTGAAACTGA
CAACAGGAAAGTGCGTAAAGCAATAAAGCACATCCGAAACATACAAACTGGATATGCACT
TCTTTTCTGAAGATGCTTCCTAAGATTTGAAAATAGGATCCAAAACAAGACTGGGTTTCA
GCATCCACCACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46517913|emb|CAG26899.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46517913|emb|CAG26899.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               273-392, + strand, RNAz p=0.611847
               

               
               715-1322, + strand, RNAz p=0.973455

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               273-392, + strand, RNAz p=0.611847
               

               
               715-1322, + strand, RNAz p=0.973455

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_175052, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_175052, +

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-439, gnl|bosTau2|chr7 (62262503-62262062)
               

               
               1-439, gnl|Hg17|chr5 (100266875-100266446)
               

               
               1-439, gnl|Mm7|chr1 (95517505-95517077)
               


               
               278-408, gnl|bosTau2|chr19 (3247837-3247707)
               

               
               278-408, gnl|Mm7|chr1 (95517224-95517117)
               


               
               570-832, gnl|bosTau2|chr7 (62244196-62243934)
               

               
               570-832, gnl|Hg17|chr5 (100250205-100249943)
               

               
               570-832, gnl|Mm7|chr1 (95503700-95503438)
               


               
               1123-1512, gnl|bosTau2|chr7 (62163151-62162758)
               

               
               1123-1512, gnl|Hg17|chr5 (100175733-100175349)
               

               
               1123-1512, gnl|Mm7|chr1 (95441886-95441495)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-439, gnl|bosTau2|chr7 (62262503-62262062)
               

               
               1-439, gnl|Hg17|chr5 (100266875-100266446)
               

               
               1-439, gnl|Mm7|chr1 (95517505-95517077)
               


               
               278-408, gnl|bosTau2|chr19 (3247837-3247707)
               

               
               278-408, gnl|Mm7|chr1 (95517224-95517117)
               


               
               570-832, gnl|bosTau2|chr7 (62244196-62243934)
               

               
               570-832, gnl|Hg17|chr5 (100250205-100249943)
               

               
               570-832, gnl|Mm7|chr1 (95503700-95503438)
               


               
               1123-1512, gnl|bosTau2|chr7 (62163151-62162758)
               

               
               1123-1512, gnl|Hg17|chr5 (100175733-100175349)
               

               
               1123-1512, gnl|Mm7|chr1 (95441886-95441495)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	273-392, + strand, RNAz p=0.611847
	715-1322, + strand, RNAz p=0.973455

	1-439, gnl\|bosTau2\|chr7 (62262503-62262062)
	1-439, gnl\|Hg17\|chr5 (100266875-100266446)
	1-439, gnl\|Mm7\|chr1 (95517505-95517077)

	278-408, gnl\|bosTau2\|chr19 (3247837-3247707)
	278-408, gnl\|Mm7\|chr1 (95517224-95517117)

	570-832, gnl\|bosTau2\|chr7 (62244196-62243934)
	570-832, gnl\|Hg17\|chr5 (100250205-100249943)
	570-832, gnl\|Mm7\|chr1 (95503700-95503438)

	1123-1512, gnl\|bosTau2\|chr7 (62163151-62162758)
	1123-1512, gnl\|Hg17\|chr5 (100175733-100175349)
	1123-1512, gnl\|Mm7\|chr1 (95441886-95441495)