Non-Coding RNA Search

Ss1.1-Spl1-SPL01A040091.5

Sequence:


               
               TCTCTGGCTCTCAAGAGGTTCCGCGACTCTGCTGATCGCTCGCAGACCCTCGAGTTGAGC
TCCGCCGAGCTGCACGCCGACTGCCTGCCCACTCGCCAGCGGCGCCGGACTGCTCCAGGG
TCTTGGATATGGACCTTCTTCAGTTCCTGGCCTTCCTGTCTGTCCTGCTACTGTCCGGAA
CAGCAGTCACAGGCACCCTGAGCACCTCTCTGGACCCGAGCCTGGAGATCTACAAGAAGA
TGTTTGAGGTGAAGCGGCGGGAGCAGCTGTTGGCACTAAAAAACCTAGCACAGCTGAATG
ATGTCCACCAGCAGTACAAGATCCTTGATGTCATGCTCAAGGGGCTGTTTAAGGTGCTGG
AGGACTCCCGGACAGTGCTCATTGCTGCAAATGTGCTCCCAGAAGGGCCCTTCCCCCAGG
ACGAGAAACTGAAGGATGCTTTCTCCCAAGTGGTGGAGAACACGGCCTTCTTCGGCGACG
TGGTGCTGCGCTTCCCAAGGATTGTGCACCATTACTTTGACCACAACTCCAACTGGAATC
TCCTCATCCGCTGGGGCATCAGCTTCTGCAACCAGTCAGGCGTCTTTGACCAGGGGCCCC
ACTCGCCCATCCTCAGCCTGATGGCCCAGGAGCTGGGGATCAGCGAGAAAGACTCTGACT
TCCAGAACCCATTTAAAGTAGACCGCACAGAGTTCATCTCCAGCACTGACCCTTTCCAGA
AGGCCCTGAGGGAAGAGGAAAAACGCCGGAAGAAAGAGGAAAAGCGGAAAGAGATCCGAA
AAGGCCCTCGGATCTCCAGATCCCAGTCCGAGTTATAGCCCCTGAGCAGGCCAGGGTTCA
AGGGGCCAGGAGGCGGCCAGTCAGGAGGAAGAGGAGGATGCAGCAGCGTCAGCTAGTGGT
GAGAGCTGGCCCATGTGAGGGGAGGCTGAGTCTGCTCAGCCCCCTGGAGCCAGCTCTGAG
CCCCAGCTAAGGGACTGGGCCGCAGAGGGCTGGATTTCCTCCCTGCGACTTCCGCAGAGT
GGTGCCAATGGAGCCTTCAGAGGGTGCTAGGCTGCACACCAACTGTGGAGATGCTGCAAA
AAGCAGGAGGGAACCTGGGCTGGATTCTCCCAGTGGGTTAGGACCCCTGACTAGTTGGCT
GCTGTCCGTTGTGGGAGGCTGCTGTCATGCCTGCTGCTGGCCCCTCTGTGTTACTGAGTT
GCCTGGCACAGGTCTCAGCCCCCTGCAGAAACACAATAAAAGCCCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTGGCTCTCAAGAGGTTCCGCGACTCTGCTGATCGCTCGCAGACCCTCGAGTTGAGC
TCCGCCGAGCTGCACGCCGACTGCCTGCCCACTCGCCAGCGGCGCCGGACTGCTCCAGGG
TCTTGGATATGGACCTTCTTCAGTTCCTGGCCTTCCTGTCTGTCCTGCTACTGTCCGGAA
CAGCAGTCACAGGCACCCTGAGCACCTCTCTGGACCCGAGCCTGGAGATCTACAAGAAGA
TGTTTGAGGTGAAGCGGCGGGAGCAGCTGTTGGCACTAAAAAACCTAGCACAGCTGAATG
ATGTCCACCAGCAGTACAAGATCCTTGATGTCATGCTCAAGGGGCTGTTTAAGGTGCTGG
AGGACTCCCGGACAGTGCTCATTGCTGCAAATGTGCTCCCAGAAGGGCCCTTCCCCCAGG
ACGAGAAACTGAAGGATGCTTTCTCCCAAGTGGTGGAGAACACGGCCTTCTTCGGCGACG
TGGTGCTGCGCTTCCCAAGGATTGTGCACCATTACTTTGACCACAACTCCAACTGGAATC
TCCTCATCCGCTGGGGCATCAGCTTCTGCAACCAGTCAGGCGTCTTTGACCAGGGGCCCC
ACTCGCCCATCCTCAGCCTGATGGCCCAGGAGCTGGGGATCAGCGAGAAAGACTCTGACT
TCCAGAACCCATTTAAAGTAGACCGCACAGAGTTCATCTCCAGCACTGACCCTTTCCAGA
AGGCCCTGAGGGAAGAGGAAAAACGCCGGAAGAAAGAGGAAAAGCGGAAAGAGATCCGAA
AAGGCCCTCGGATCTCCAGATCCCAGTCCGAGTTATAGCCCCTGAGCAGGCCAGGGTTCA
AGGGGCCAGGAGGCGGCCAGTCAGGAGGAAGAGGAGGATGCAGCAGCGTCAGCTAGTGGT
GAGAGCTGGCCCATGTGAGGGGAGGCTGAGTCTGCTCAGCCCCCTGGAGCCAGCTCTGAG
CCCCAGCTAAGGGACTGGGCCGCAGAGGGCTGGATTTCCTCCCTGCGACTTCCGCAGAGT
GGTGCCAATGGAGCCTTCAGAGGGTGCTAGGCTGCACACCAACTGTGGAGATGCTGCAAA
AAGCAGGAGGGAACCTGGGCTGGATTCTCCCAGTGGGTTAGGACCCCTGACTAGTTGGCT
GCTGTCCGTTGTGGGAGGCTGCTGTCATGCCTGCTGCTGGCCCCTCTGTGTTACTGAGTT
GCCTGGCACAGGTCTCAGCCCCCTGCAGAAACACAATAAAAGCCCACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H6E4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H6E4_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               770-1092, + strand, RNAz p=0.923764

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               770-1092, + strand, RNAz p=0.923764

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_024821, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_024821, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               691-1092, gnl|bosTau2|chr5 (70366539-70366945)
               

               
               691-1092, gnl|Hg17|chr22 (40546200-40546600)
               

               
               691-1092, gnl|Mm7|chr15 (82225259-82225635)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               691-1092, gnl|bosTau2|chr5 (70366539-70366945)
               

               
               691-1092, gnl|Hg17|chr22 (40546200-40546600)
               

               
               691-1092, gnl|Mm7|chr15 (82225259-82225635)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               ese (0.126502)

	691-1092, gnl\|bosTau2\|chr5 (70366539-70366945)
	691-1092, gnl\|Hg17\|chr22 (40546200-40546600)
	691-1092, gnl\|Mm7\|chr15 (82225259-82225635)