Non-Coding RNA Search

Ss1.1-Spl1-SPL01A050096.5

Sequence:


               
               GAAGAGAATGGGCAGGCGGCGGGTCCGGGTCTGCAGGCTGGAGCTGTGGGCTGCTGGACA
TGGTTGGTTGGGTTGAGCCGGGCCGGGCTGTGGCGCGGAGCTGGAGGGGGTAGCAGTGAG
CTGCAGCGGAGGCTGCAGGATTCGATTTGACTGATTGGGGAGGCAGGAGCCATGCGGGGC
CAGCGGAGCCTGCTGCTGGGCCCTGCCCGCCTCTGCCTGCGCCTGCTTCTGCTCCTGGGC
TACCGGCGCCGCTGCCCACCTCTGCTCCGGGGCCTGGTCCAGCGCTGGCGCTATGGCAAG
GTCTGCCTGCGCTCCTTGCTCTACAACTCCTTCGGGGGCAGTGACACCGCTGTGGATGCT
GCCTTTGAGCCTATCTACTGGCTGGTGGACAACGTGATCCGCTGGTGTGGGGTGGTGTTC
GTGGTGCTGGTGATCGTGCTGACCAGCTCCATCGTGGCCATCGCCTACCTGTGTGTCCTG
CCCCTCATCCTCCAAACTTACTCCGTGCCACGACTCTGCTGGCATTTCTTCTATAGTCAC
TGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCTATCACCACCCCACCCGGATAC
CCACCCCAGGGCAGGAACGATATCACAACAGTCTCCATCTGCAAGAAGTGCATTAACCCC
AAGCCAGCCCGAACGCACCACTGCAGCATCTGCAATAGGTGTGTGCTGAAGATGGACCAT
CACTGCCCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTC
TGCTTTTTCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAGAATGGGCAGGCGGCGGGTCCGGGTCTGCAGGCTGGAGCTGTGGGCTGCTGGACA
TGGTTGGTTGGGTTGAGCCGGGCCGGGCTGTGGCGCGGAGCTGGAGGGGGTAGCAGTGAG
CTGCAGCGGAGGCTGCAGGATTCGATTTGACTGATTGGGGAGGCAGGAGCCATGCGGGGC
CAGCGGAGCCTGCTGCTGGGCCCTGCCCGCCTCTGCCTGCGCCTGCTTCTGCTCCTGGGC
TACCGGCGCCGCTGCCCACCTCTGCTCCGGGGCCTGGTCCAGCGCTGGCGCTATGGCAAG
GTCTGCCTGCGCTCCTTGCTCTACAACTCCTTCGGGGGCAGTGACACCGCTGTGGATGCT
GCCTTTGAGCCTATCTACTGGCTGGTGGACAACGTGATCCGCTGGTGTGGGGTGGTGTTC
GTGGTGCTGGTGATCGTGCTGACCAGCTCCATCGTGGCCATCGCCTACCTGTGTGTCCTG
CCCCTCATCCTCCAAACTTACTCCGTGCCACGACTCTGCTGGCATTTCTTCTATAGTCAC
TGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCTATCACCACCCCACCCGGATAC
CCACCCCAGGGCAGGAACGATATCACAACAGTCTCCATCTGCAAGAAGTGCATTAACCCC
AAGCCAGCCCGAACGCACCACTGCAGCATCTGCAATAGGTGTGTGCTGAAGATGGACCAT
CACTGCCCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTC
TGCTTTTTCATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5JTH2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5JTH2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-157, - strand, RNAz p=0.510547

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-157, - strand, RNAz p=0.510547

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-157, gnl|bosTau2|chr26 (10629517-10629368)
               

               
               5-157, gnl|Hg17|chr10 (99195929-99196081)
               

               
               5-157, gnl|Mm7|chr19 (41827333-41827485)
               


               
               165-703, gnl|bosTau2|chr26 (11169850-11169302)
               

               
               165-703, gnl|Hg17|chr10 (99201416-99203369)
               

               
               165-703, gnl|Mm7|chr19 (41831440-41833531)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-157, gnl|bosTau2|chr26 (10629517-10629368)
               

               
               5-157, gnl|Hg17|chr10 (99195929-99196081)
               

               
               5-157, gnl|Mm7|chr19 (41827333-41827485)
               


               
               165-703, gnl|bosTau2|chr26 (11169850-11169302)
               

               
               165-703, gnl|Hg17|chr10 (99201416-99203369)
               

               
               165-703, gnl|Mm7|chr19 (41831440-41833531)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fli (0.202881)
               

               
               nje (0.16592)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               nje (0.16592)

	5-157, gnl\|bosTau2\|chr26 (10629517-10629368)
	5-157, gnl\|Hg17\|chr10 (99195929-99196081)
	5-157, gnl\|Mm7\|chr19 (41827333-41827485)

	165-703, gnl\|bosTau2\|chr26 (11169850-11169302)
	165-703, gnl\|Hg17\|chr10 (99201416-99203369)
	165-703, gnl\|Mm7\|chr19 (41831440-41833531)