Non-Coding RNA Search

Ss1.1-Spl1-SPL01A060042.5

Sequence:


               
               CAACTCGGGAGACATGGCTGGCGTTAAAGCTCTTGTGGCTTTATCCTTCAGTGGGGCTAT
TGGGCTGACTTTTCTTATGCTGGGATGTGCCTTAGAGGATTATGGTGTGTACTGGCCCTT
GTTTGTCCTGGTATTCCACGCACTCTCTCCCATCCCCCATTTCATTGCCAAAAGAGCAAC
GTATGACTCCGATGCAACAAGTAGTGCCTGTCGGGAACTGGCTTATTTTTTCACTACTGG
AATTGTTGTGTCTGCCTTTGGATTTCCCGTTATTCTTGCTCGTGTGGCTGTGATCAAATG
GGGAGCCTGTGGTCTTGTGCTGGCGGGCAATGCAGTCATTTTCCTTACAATTCAAGGTTT
TTTCCTTGTATTTGGAAGAGGAGATGATTTTAGCTGGGAGCAGTGGTAGCACGTGCTTTA
TTCTGATAAAATGCGTTTAATTTCTTAGAATTTATACTATATGTATATGTGTGCACATGT
GGCCTTTTACTATGAAATTTAATATGCTGGGTTTTTTATACCTTTGTAATCATGTTCACA
TGAAGAAGGACTCCCAGGGGAAAAGGTTACTTTGAGTCCTAGCCAATAGACTTCTCCATT
TACTCAAGTCGAATTATGTTCTTTGTTAAGCGAGTCACATAGCCACAGGTGCTCTCGGAG
AATATGTTAACACAGTTTCAAAGACAGCTGCTCACGTCCTGTGATGCCTGTTTGCCTTTT
GCCCAGGGTTGTGCTTGAGTAGGCACGTAACACTGGGGCCCTCTCAGCTCTGCTCGGGAC
TCCCAAGACATACCTGTGGCCCACAGGGGCAGAGGTGGCTCCCTCTTTGTGTCGTAGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTCGGGAGACATGGCTGGCGTTAAAGCTCTTGTGGCTTTATCCTTCAGTGGGGCTAT
TGGGCTGACTTTTCTTATGCTGGGATGTGCCTTAGAGGATTATGGTGTGTACTGGCCCTT
GTTTGTCCTGGTATTCCACGCACTCTCTCCCATCCCCCATTTCATTGCCAAAAGAGCAAC
GTATGACTCCGATGCAACAAGTAGTGCCTGTCGGGAACTGGCTTATTTTTTCACTACTGG
AATTGTTGTGTCTGCCTTTGGATTTCCCGTTATTCTTGCTCGTGTGGCTGTGATCAAATG
GGGAGCCTGTGGTCTTGTGCTGGCGGGCAATGCAGTCATTTTCCTTACAATTCAAGGTTT
TTTCCTTGTATTTGGAAGAGGAGATGATTTTAGCTGGGAGCAGTGGTAGCACGTGCTTTA
TTCTGATAAAATGCGTTTAATTTCTTAGAATTTATACTATATGTATATGTGTGCACATGT
GGCCTTTTACTATGAAATTTAATATGCTGGGTTTTTTATACCTTTGTAATCATGTTCACA
TGAAGAAGGACTCCCAGGGGAAAAGGTTACTTTGAGTCCTAGCCAATAGACTTCTCCATT
TACTCAAGTCGAATTATGTTCTTTGTTAAGCGAGTCACATAGCCACAGGTGCTCTCGGAG
AATATGTTAACACAGTTTCAAAGACAGCTGCTCACGTCCTGTGATGCCTGTTTGCCTTTT
GCCCAGGGTTGTGCTTGAGTAGGCACGTAACACTGGGGCCCTCTCAGCTCTGCTCGGGAC
TCCCAAGACATACCTGTGGCCCACAGGGGCAGAGGTGGCTCCCTCTTTGTGTCGTAGGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33990030|gb|AAH56250.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33990030|gb|AAH56250.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               265-423, + strand, RNAz p=0.612754

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               265-423, + strand, RNAz p=0.612754

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_017526, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017526, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               265-840, gnl|bosTau2|chr3 (53561021-53561588)
               

               
               265-840, gnl|Hg17|chr1 (65609485-65610029)
               

               
               265-840, gnl|Mm7|chr4 (101034258-101034750)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               265-840, gnl|bosTau2|chr3 (53561021-53561588)
               

               
               265-840, gnl|Hg17|chr1 (65609485-65610029)
               

               
               265-840, gnl|Mm7|chr4 (101034258-101034750)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               cty (0.10408)

	265-840, gnl\|bosTau2\|chr3 (53561021-53561588)
	265-840, gnl\|Hg17\|chr1 (65609485-65610029)
	265-840, gnl\|Mm7\|chr4 (101034258-101034750)