Ss1.1-Spl1-SPL01A060084.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACCGCGGCGACAACACACCAAACGAGCGATAGGGCCCGAGGGCAGCGATGCTGTGGTT TCAGGGCGCCATTCCGGCCGCCATCGCATCAGCCAAGAGGAGCGGCGCGGTCTTCGTGGT GTTCGTGGCAGGTGATGATGAGCAGTCTACACAGATGGCTGCAAGTTGGGAAGATGACAA GGTGACAGAAGCATCTTCAAACAATTTTGTTGCTATTAAAATCGATACCAAAAGTGAAGC CTGCCTACAATTTTCACAAATCTATCCTGTAGTATGTGTTCCATCCAGTTTCTTTATTGG AGACAGTGGAATTCCCTTGGAGGTAATAGCAGGAAGTGTTTCTGCAGATGAACTTGTTAG CAGAATCCACAAAGTCCAGCAGATGCACACATTAAAAGGTGAAACATCAGTGGCAAATGG TAGCCAGTCAGAAAGTTCAGTCTCTACCCCATCCAACTCATCTGAACATAACAACACTTC TGAAAATTGTCAGTCTGGAAATGTAGAGCTTCGCAAGACACCACCCACTTCTCCTGATAA AAAGTCAGATTCTGCAGCAGGAGGAGAAAGTTCAGGCCATGCTACTGTGTCTCAGGAGCC TAGTGGATGTTCAAATCAGAGACCTACAGAGGACCTCACCGTCAGAGTGGAAAGACTAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACCGCGGCGACAACACACCAAACGAGCGATAGGGCCCGAGGGCAGCGATGCTGTGGTT TCAGGGCGCCATTCCGGCCGCCATCGCATCAGCCAAGAGGAGCGGCGCGGTCTTCGTGGT GTTCGTGGCAGGTGATGATGAGCAGTCTACACAGATGGCTGCAAGTTGGGAAGATGACAA GGTGACAGAAGCATCTTCAAACAATTTTGTTGCTATTAAAATCGATACCAAAAGTGAAGC CTGCCTACAATTTTCACAAATCTATCCTGTAGTATGTGTTCCATCCAGTTTCTTTATTGG AGACAGTGGAATTCCCTTGGAGGTAATAGCAGGAAGTGTTTCTGCAGATGAACTTGTTAG CAGAATCCACAAAGTCCAGCAGATGCACACATTAAAAGGTGAAACATCAGTGGCAAATGG TAGCCAGTCAGAAAGTTCAGTCTCTACCCCATCCAACTCATCTGAACATAACAACACTTC TGAAAATTGTCAGTCTGGAAATGTAGAGCTTCGCAAGACACCACCCACTTCTCCTGATAA AAAGTCAGATTCTGCAGCAGGAGGAGAAAGTTCAGGCCATGCTACTGTGTCTCAGGAGCC TAGTGGATGTTCAAATCAGAGACCTACAGAGGACCTCACCGTCAGAGTGGAAAGACTAAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-135, gnl|bosTau2|chr2 (37978925-37978791) | |
| 1-135, gnl|canFam2|chr19 (41540861-41540773) | |
| 1-135, gnl|dasNov1|scaffold_106634 (2050-1959) | |
| 1-135, gnl|echTel1|scaffold_314319 (73546-73634) | |
| 1-135, gnl|Hg17|chr2 (136333183-136333317) | |
| 1-135, gnl|hg17|chrX (47007951-47008041) | |
| 1-135, gnl|mm7|chr1 (128124661-128124593) | |
| 1-135, gnl|Mm7|chr1 (128124553-128124687) | |
| 1-135, gnl|panTro1|chrX (48591188-48591278) | |
| 1-135, gnl|rheMac2|chrX (45211414-45211504) | |
| 1-135, gnl|rn3|chr13 (40962642-40962574) | |
| 380-561, gnl|bosTau2|chr2 (37968436-37968258) | |
| 380-561, gnl|canFam2|chr19 (41551839-41552105) | |
| 380-561, gnl|canFam2|chr19 (41552059-41551893) | |
| 380-561, gnl|dasNov1|scaffold_106634 (2474-2298) | |
| 380-561, gnl|dasNov1|scaffold_188617 (4280-4547) | |
| 380-561, gnl|hg17|chr2 (136346762-136347029) | |
| 380-561, gnl|Hg17|chr2 (136346816-136346994) | |
| 380-561, gnl|hg17|chrX (47006812-47006994) | |
| 380-561, gnl|loxAfr1|scaffold_81157 (3701-3467) | |
| 380-561, gnl|loxAfr1|scaffold_81157 (3485-3655) | |
| 380-561, gnl|mm7|chr1 (128138936-128139138) | |
| 380-561, gnl|mm7|chr1 (128139126-128138962) | |
| 380-561, gnl|Mm7|chr1 (128138960-128139135) | |
| 380-561, gnl|monDom2|scaffold_2 (21353768-21354033) | |
| 380-561, gnl|oryCun1|scaffold_195653 (9362-9627) | |
| 380-561, gnl|oryCun1|scaffold_67364 (1129-962) | |
| 380-561, gnl|panTro1|chr13 (25335258-25335525) | |
| 380-561, gnl|panTro1|chrX (48590002-48590184) | |
| 380-561, gnl|rheMac2|chr13 (116402973-116402702) | |
| 380-561, gnl|rheMac2|chrX (45210271-45210444) | |
| 380-561, gnl|rn3|chr13 (40976347-40976574) | |
| 380-561, gnl|rn3|chr13 (40976562-40976397) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-135, gnl|bosTau2|chr2 (37978925-37978791) | |
| 1-135, gnl|canFam2|chr19 (41540861-41540773) | |
| 1-135, gnl|dasNov1|scaffold_106634 (2050-1959) | |
| 1-135, gnl|echTel1|scaffold_314319 (73546-73634) | |
| 1-135, gnl|Hg17|chr2 (136333183-136333317) | |
| 1-135, gnl|hg17|chrX (47007951-47008041) | |
| 1-135, gnl|mm7|chr1 (128124661-128124593) | |
| 1-135, gnl|Mm7|chr1 (128124553-128124687) | |
| 1-135, gnl|panTro1|chrX (48591188-48591278) | |
| 1-135, gnl|rheMac2|chrX (45211414-45211504) | |
| 1-135, gnl|rn3|chr13 (40962642-40962574) | |
| 380-561, gnl|bosTau2|chr2 (37968436-37968258) | |
| 380-561, gnl|canFam2|chr19 (41551839-41552105) | |
| 380-561, gnl|canFam2|chr19 (41552059-41551893) | |
| 380-561, gnl|dasNov1|scaffold_106634 (2474-2298) | |
| 380-561, gnl|dasNov1|scaffold_188617 (4280-4547) | |
| 380-561, gnl|hg17|chr2 (136346762-136347029) | |
| 380-561, gnl|Hg17|chr2 (136346816-136346994) | |
| 380-561, gnl|hg17|chrX (47006812-47006994) | |
| 380-561, gnl|loxAfr1|scaffold_81157 (3701-3467) | |
| 380-561, gnl|loxAfr1|scaffold_81157 (3485-3655) | |
| 380-561, gnl|mm7|chr1 (128138936-128139138) | |
| 380-561, gnl|mm7|chr1 (128139126-128138962) | |
| 380-561, gnl|Mm7|chr1 (128138960-128139135) | |
| 380-561, gnl|monDom2|scaffold_2 (21353768-21354033) | |
| 380-561, gnl|oryCun1|scaffold_195653 (9362-9627) | |
| 380-561, gnl|oryCun1|scaffold_67364 (1129-962) | |
| 380-561, gnl|panTro1|chr13 (25335258-25335525) | |
| 380-561, gnl|panTro1|chrX (48590002-48590184) | |
| 380-561, gnl|rheMac2|chr13 (116402973-116402702) | |
| 380-561, gnl|rheMac2|chrX (45210271-45210444) | |
| 380-561, gnl|rn3|chr13 (40976347-40976574) | |
| 380-561, gnl|rn3|chr13 (40976562-40976397) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cki (0.330469) | |
| hea (0.204499) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eru (0.120048) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.330469) | |
| hea (0.204499) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eru (0.120048) |